Wall clock time and date at job start Tue Mar 31 2020 17:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35912 * 116.99998 * 2 1 4 4 C 1.39136 * 120.47341 * 0.20608 * 3 2 1 5 5 C 1.38536 * 118.37183 * 180.26832 * 4 3 2 6 6 C 1.38253 * 119.22495 * 359.74580 * 5 4 3 7 7 N 1.31854 * 120.88487 * 0.02883 * 6 5 4 8 8 C 1.31839 * 121.77797 * 359.97274 * 7 6 5 9 9 C 1.50699 * 119.65678 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47430 * 89.99858 * 9 8 7 11 11 O 1.21280 * 119.99919 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99941 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99958 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46542 * 325.00126 * 13 12 10 15 15 C 1.53001 * 109.46939 * 84.99978 * 13 12 10 16 16 C 1.53001 * 109.47030 * 60.00043 * 15 13 12 17 17 C 1.53005 * 109.47152 * 60.00101 * 16 15 13 18 18 C 1.53001 * 109.47070 * 299.99874 * 17 16 15 19 19 H 1.09007 * 109.47075 * 300.00544 * 18 17 16 20 20 N 1.46499 * 109.47277 * 180.02562 * 18 17 16 21 21 C 1.36935 * 119.99938 * 85.00061 * 20 18 17 22 22 H 1.07999 * 120.00083 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99632 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99535 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 0.27829 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 C 1.52997 * 109.47158 * 204.99808 * 13 12 10 30 30 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47498 * 300.00347 * 1 2 3 32 32 H 1.09004 * 109.46812 * 60.00016 * 1 2 3 33 33 H 1.07999 * 120.81897 * 0.02562 * 4 3 2 34 34 H 1.08007 * 120.39349 * 179.77518 * 5 4 3 35 35 H 1.07999 * 119.56248 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.46967 * 329.99798 * 9 8 7 37 37 H 1.09002 * 109.47052 * 210.00363 * 9 8 7 38 38 H 0.97004 * 120.00369 * 0.02562 * 12 10 9 39 39 H 1.08995 * 109.46954 * 179.97438 * 15 13 12 40 40 H 1.09005 * 109.47015 * 300.00287 * 15 13 12 41 41 H 1.08998 * 109.46936 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.47570 * 299.99971 * 16 15 13 43 43 H 1.08992 * 109.47053 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.46989 * 59.99514 * 17 16 15 45 45 H 0.97004 * 119.99469 * 265.00130 * 20 18 17 46 46 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 47 47 H 1.09000 * 109.46830 * 179.97438 * 29 13 12 48 48 H 1.09007 * 109.46838 * 60.00055 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3841 0.0043 5 6 1.9716 3.5946 -0.0016 6 6 3.3541 3.5976 -0.0061 7 7 4.0334 2.4675 -0.0055 8 6 3.4305 1.2950 0.0000 9 6 4.2542 0.0330 -0.0001 10 6 4.5346 -0.3840 1.4207 11 8 4.1073 0.2781 2.3426 12 7 5.2594 -1.4933 1.6667 13 6 5.5325 -1.8985 3.0479 14 1 5.6618 -1.0113 3.6678 15 6 4.3592 -2.7248 3.5785 16 6 4.1776 -3.9700 2.7081 17 6 5.4545 -4.8120 2.7497 18 6 6.6278 -3.9856 2.2192 19 1 6.4246 -3.6841 1.1916 20 7 7.8503 -4.7919 2.2584 21 6 8.1471 -5.6363 1.2221 22 1 7.4801 -5.7076 0.3757 23 6 9.3057 -6.3999 1.2591 24 7 9.5907 -7.2120 0.2632 25 14 10.4561 -6.2813 2.7261 26 1 11.4662 -5.2212 2.4785 27 1 9.6738 -5.9452 3.9427 28 1 11.1429 -7.5831 2.9232 29 6 6.8093 -2.7404 3.0895 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.2184 2.3519 0.0081 34 1 1.4234 4.5251 -0.0021 35 1 3.8849 4.5381 -0.0111 36 1 5.1960 0.2139 -0.5183 37 1 3.7054 -0.7590 -0.5097 38 1 5.6009 -2.0231 0.9294 39 1 4.5625 -3.0266 4.6059 40 1 3.4495 -2.1250 3.5488 41 1 3.3421 -4.5590 3.0863 42 1 3.9745 -3.6687 1.6805 43 1 5.3250 -5.6992 2.1301 44 1 5.6577 -5.1133 3.7773 45 1 8.4495 -4.7275 3.0186 46 1 10.4002 -7.7459 0.2893 47 1 7.0127 -3.0414 4.1172 48 1 7.6452 -2.1516 2.7115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981294363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:34 Heat of formation + Delta-G solvation = -34.243005 kcal Electronic energy + Delta-G solvation = -28961.610179 eV Core-core repulsion = 25016.816130 eV Total energy + Delta-G solvation = -3944.794049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08006 -39.89817 -38.40658 -37.89041 -34.56918 -33.39441 -32.95337 -31.68190 -31.33735 -29.92181 -28.51993 -28.00431 -27.63190 -23.55653 -23.14422 -23.05665 -22.08076 -20.98906 -20.72399 -18.91697 -18.39756 -17.61604 -17.40927 -17.18963 -16.50831 -16.06297 -15.40836 -15.36599 -14.94271 -14.63183 -14.52747 -14.19347 -14.01991 -13.86053 -13.67726 -13.49404 -13.19158 -12.82120 -12.68642 -12.55011 -12.32125 -11.97737 -11.89072 -11.77641 -11.73932 -11.66378 -11.24796 -10.95779 -10.89666 -10.41585 -10.23186 -10.08173 -10.06455 -9.80767 -9.68365 -9.67601 -9.57246 -8.93123 -8.82133 -8.57757 -7.27606 -5.77903 -3.13379 0.84910 1.03097 2.78884 2.87797 3.20928 3.37584 3.40602 3.45593 3.66389 4.07447 4.33161 4.42807 4.58685 4.67257 4.77669 4.82819 4.83676 4.95581 5.04123 5.07309 5.13230 5.13618 5.20589 5.29669 5.46655 5.51183 5.58596 5.64328 5.64926 5.73100 5.80911 5.82429 5.91748 6.00237 6.06040 6.16060 6.19171 6.27111 6.42957 6.45561 6.66171 6.69507 6.87518 6.89640 7.01380 7.66609 7.77846 7.97953 8.37070 8.41248 9.19734 9.92581 10.12272 11.40375 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002541 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.976287 B =11016.377740 C =11311.202704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.063 3.937 7 N -0.438 5.438 8 C 0.131 3.869 9 C -0.090 4.090 10 C 0.526 3.474 11 O -0.543 6.543 12 N -0.718 5.718 13 C 0.154 3.846 14 H 0.083 0.917 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.185 3.815 19 H 0.051 0.949 20 N -0.749 5.749 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.277 1.277 28 H -0.292 1.292 29 C -0.137 4.137 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.404 0.596 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.074 0.926 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.641 19.406 -0.065 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.045 3.955 4 C -0.193 4.193 5 C -0.156 4.156 6 C -0.094 4.094 7 N -0.147 5.147 8 C -0.010 4.010 9 C -0.131 4.131 10 C 0.311 3.689 11 O -0.420 6.420 12 N -0.371 5.371 13 C 0.049 3.951 14 H 0.101 0.899 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.075 3.925 19 H 0.069 0.931 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.203 1.203 28 H -0.218 1.218 29 C -0.176 4.176 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.940 19.562 0.372 27.231 hybrid contribution -0.202 -0.175 0.704 0.753 sum -19.142 19.387 1.076 27.266 Atomic orbital electron populations 1.23115 0.78163 1.04444 1.01219 1.86121 1.21504 1.25836 1.88189 1.19839 0.93074 0.85223 0.97400 1.21646 1.00676 0.92149 1.04787 1.21961 0.95769 0.98172 0.99656 1.22597 0.91424 0.96309 0.99105 1.67460 1.40016 0.97507 1.09732 1.19935 0.87707 0.93385 0.99928 1.20479 1.01893 0.94566 0.96132 1.20208 0.77826 0.80268 0.90568 1.90677 1.51358 1.53724 1.46227 1.46146 1.54670 1.26914 1.09383 1.20884 0.94572 0.97145 0.82506 0.89899 1.21896 0.98296 0.96817 0.99561 1.21491 0.98185 0.95895 0.99690 1.22246 0.94648 0.99317 1.01487 1.20126 0.86825 0.88921 0.96578 0.93066 1.42797 1.23224 1.50108 1.22963 1.19056 1.05222 1.15140 0.97786 0.89209 1.24674 0.98152 0.98881 0.97471 1.69704 1.27027 1.29680 1.31776 0.86555 0.81516 0.77090 0.83378 1.21121 1.20321 1.21842 1.22166 0.96262 0.97370 1.01810 0.87786 0.92578 0.92630 0.84379 0.84583 0.82467 0.86817 0.86816 0.75960 0.91382 0.92052 0.92821 0.92311 0.91620 0.92756 0.80658 0.93087 0.90758 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.83 101.05 0.99 1.16 16 2 O -0.30 -3.22 9.54 -19.46 -0.19 -3.40 16 3 C 0.09 1.06 6.67 -39.07 -0.26 0.79 16 4 C -0.17 -1.50 9.14 -39.14 -0.36 -1.86 16 5 C -0.14 -1.13 10.11 -39.47 -0.40 -1.53 16 6 C 0.06 0.63 11.18 -17.54 -0.20 0.43 16 7 N -0.44 -5.69 10.27 -9.35 -0.10 -5.78 16 8 C 0.13 1.67 5.29 -82.42 -0.44 1.24 16 9 C -0.09 -1.05 5.78 -29.03 -0.17 -1.22 16 10 C 0.53 7.41 7.79 -10.99 -0.09 7.32 16 11 O -0.54 -9.50 15.70 5.56 0.09 -9.42 16 12 N -0.72 -9.38 4.23 -53.81 -0.23 -9.61 16 13 C 0.15 2.11 2.78 -67.93 -0.19 1.93 16 14 H 0.08 1.21 7.58 -51.93 -0.39 0.82 16 15 C -0.13 -1.69 5.60 -26.73 -0.15 -1.84 16 16 C -0.11 -1.56 5.77 -26.73 -0.15 -1.72 16 17 C -0.14 -2.27 5.50 -26.73 -0.15 -2.42 16 18 C 0.19 3.29 2.60 -67.93 -0.18 3.11 16 19 H 0.05 0.92 6.44 -51.92 -0.33 0.58 16 20 N -0.75 -16.95 4.93 -53.42 -0.26 -17.21 16 21 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 22 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 25 Si 0.88 21.88 27.74 -169.99 -4.71 17.17 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 C -0.14 -2.05 5.08 -26.73 -0.14 -2.19 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.32 7.69 -51.93 -0.40 -0.08 16 32 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 33 H 0.14 0.85 6.45 -52.49 -0.34 0.51 16 34 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 1.13 7.51 -51.93 -0.39 0.74 16 38 H 0.40 4.90 6.87 -40.82 -0.28 4.62 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.79 7.60 -51.93 -0.39 0.40 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -35.06 385.40 -8.34 -43.40 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.40 Total: 10.74 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.11 Total: -3.52 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.19 Total: -60.77 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.10 Total: -12.82 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.06 -8.34 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981294363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.153 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds