Wall clock time and date at job start Tue Mar 31 2020 17:28:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35674 * 117.00399 * 2 1
4 4 C 1.38917 * 119.68651 * 180.02562 * 3 2 1
5 5 C 1.38374 * 119.11390 * 179.97438 * 4 3 2
6 6 C 1.50703 * 120.75934 * 180.02562 * 5 4 3
7 7 C 1.50701 * 109.47064 * 89.99838 * 6 5 4
8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5
9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5
10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6
11 11 H 1.08996 * 109.47535 * 325.00618 * 10 9 7
12 12 C 1.53003 * 109.47218 * 85.00262 * 10 9 7
13 13 C 1.52992 * 109.47371 * 179.97438 * 12 10 9
14 14 C 1.52997 * 109.47602 * 300.00379 * 13 12 10
15 15 C 1.53003 * 109.47067 * 59.99435 * 14 13 12
16 16 H 1.09006 * 109.47034 * 180.02562 * 15 14 13
17 17 N 1.46507 * 109.46795 * 60.00552 * 15 14 13
18 18 C 1.36939 * 119.99972 * 85.00008 * 17 15 14
19 19 H 1.07997 * 119.99922 * 0.02562 * 18 17 15
20 20 C 1.38807 * 119.99533 * 179.97438 * 18 17 15
21 21 N 1.31612 * 120.00587 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 119.99579 * 179.97438 * 20 18 17
23 23 H 1.48499 * 109.47176 * 90.00302 * 22 20 18
24 24 H 1.48505 * 109.47068 * 209.99679 * 22 20 18
25 25 H 1.48496 * 109.47618 * 330.00161 * 22 20 18
26 26 C 1.52997 * 109.47181 * 300.00423 * 15 14 13
27 27 C 1.38825 * 118.48510 * 0.27283 * 5 4 3
28 28 C 1.38048 * 119.28956 * 359.45756 * 27 5 4
29 29 N 1.31970 * 120.83103 * 0.55668 * 28 27 5
30 30 H 1.08999 * 109.47471 * 180.02562 * 1 2 3
31 31 H 1.09007 * 109.47193 * 300.00404 * 1 2 3
32 32 H 1.08997 * 109.47315 * 60.00010 * 1 2 3
33 33 H 1.08003 * 120.44240 * 359.95464 * 4 3 2
34 34 H 1.09002 * 109.47152 * 329.99931 * 6 5 4
35 35 H 1.09001 * 109.46980 * 210.00031 * 6 5 4
36 36 H 0.96995 * 120.00011 * 0.02562 * 9 7 6
37 37 H 1.08998 * 109.47302 * 299.99899 * 12 10 9
38 38 H 1.09006 * 109.46570 * 59.99667 * 12 10 9
39 39 H 1.08997 * 109.47506 * 180.02562 * 13 12 10
40 40 H 1.09006 * 109.47100 * 60.00538 * 13 12 10
41 41 H 1.09006 * 109.47022 * 300.00206 * 14 13 12
42 42 H 1.09001 * 109.47821 * 179.97438 * 14 13 12
43 43 H 0.96999 * 119.99524 * 264.99371 * 17 15 14
44 44 H 0.97002 * 120.00690 * 180.02562 * 21 20 18
45 45 H 1.08996 * 109.47340 * 299.99501 * 26 15 14
46 46 H 1.09007 * 109.46591 * 179.97438 * 26 15 14
47 47 H 1.08002 * 120.36051 * 179.70314 * 27 5 4
48 48 H 1.07998 * 119.58659 * 180.27355 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0450 1.2088 0.0000
4 6 3.4326 1.2738 -0.0005
5 6 4.0486 2.5129 -0.0011
6 6 5.5513 2.6267 -0.0022
7 6 6.0511 2.6645 -1.4235
8 8 5.2644 2.6054 -2.3446
9 7 7.3722 2.7650 -1.6708
10 6 7.8579 2.8023 -3.0523
11 1 7.2315 2.1638 -3.6752
12 6 7.8000 4.2392 -3.5747
13 6 8.3078 4.2783 -5.0174
14 6 9.7526 3.7769 -5.0633
15 6 9.8106 2.3400 -4.5409
16 1 10.8400 1.9829 -4.5732
17 7 8.9689 1.4816 -5.3784
18 6 9.4738 0.9434 -6.5319
19 1 10.4924 1.1513 -6.8241
20 6 8.6764 0.1297 -7.3250
21 7 7.4355 -0.1249 -6.9682
22 14 9.3649 -0.6039 -8.8990
23 1 9.9829 -1.9211 -8.6022
24 1 8.2673 -0.7827 -9.8832
25 1 10.3916 0.3088 -9.4629
26 6 9.3027 2.3009 -3.0982
27 6 3.2507 3.6490 0.0048
28 6 1.8772 3.5096 -0.0005
29 7 1.3187 2.3140 0.0000
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 4.0228 0.3693 -0.0002
34 1 5.9812 1.7667 0.5113
35 1 5.8468 3.5416 0.5113
36 1 8.0012 2.8126 -0.9340
37 1 6.7708 4.5966 -3.5417
38 1 8.4265 4.8777 -2.9518
39 1 8.2670 5.3020 -5.3894
40 1 7.6816 3.6397 -5.6405
41 1 10.3788 4.4155 -4.4402
42 1 10.1143 3.8043 -6.0912
43 1 8.0541 1.2945 -5.1156
44 1 6.8784 -0.6938 -7.5222
45 1 9.9289 2.9394 -2.4752
46 1 9.3436 1.2771 -2.7263
47 1 3.6995 4.6313 0.0093
48 1 1.2519 4.3902 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981335447.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:28:38
Heat of formation + Delta-G solvation = -64.359187 kcal
Electronic energy + Delta-G solvation = -28574.452738 eV
Core-core repulsion = 24628.352753 eV
Total energy + Delta-G solvation = -3946.099985 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.74259 -40.95915 -39.49222 -38.76466 -35.99310 -34.81661 -34.63886 -32.69571
-31.73271 -31.01755 -29.91657 -28.98468 -27.92996 -25.68667 -24.48003 -23.81249
-23.28001 -22.59154 -21.41769 -20.06375 -19.23506 -18.90426 -18.14098 -18.01560
-17.21480 -16.97251 -16.87349 -16.54334 -16.21976 -15.78111 -15.49062 -15.32015
-15.19725 -15.17754 -15.01837 -14.64206 -14.23871 -13.86228 -13.73010 -13.44185
-13.38222 -13.19455 -12.89010 -12.83733 -12.81363 -12.58508 -12.48637 -12.18084
-12.15612 -12.13508 -11.79773 -11.54933 -11.44869 -11.18439 -10.98563 -10.81506
-10.68262 -10.47295 -9.95665 -9.48884 -8.95164 -7.90746 -5.18339 0.16756
0.24524 1.45120 1.47011 1.55244 1.71401 2.09942 2.27673 2.57429
2.82996 3.34708 3.42650 3.57734 3.79081 3.91357 3.97289 4.03972
4.13210 4.15868 4.19337 4.23783 4.39449 4.39613 4.41713 4.48334
4.55094 4.58812 4.62619 4.72303 4.72937 4.78275 4.80718 4.84716
4.92310 5.04156 5.12947 5.25530 5.31608 5.33167 5.45979 5.48079
5.50730 5.55704 5.68311 5.69474 6.23917 6.30971 6.67575 6.84812
7.36460 7.40037 8.17201 8.36839 9.32707
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.012282 B = 0.002753 C = 0.002382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2279.136255 B =10167.548619 C =11750.837247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.328 6.328
3 C 0.295 3.705
4 C -0.197 4.197
5 C 0.005 3.995
6 C -0.093 4.093
7 C 0.507 3.493
8 O -0.586 6.586
9 N -0.707 5.707
10 C 0.152 3.848
11 H 0.037 0.963
12 C -0.107 4.107
13 C -0.108 4.108
14 C -0.126 4.126
15 C 0.165 3.835
16 H 0.053 0.947
17 N -0.735 5.735
18 C -0.230 4.230
19 H 0.079 0.921
20 C -0.083 4.083
21 N -0.974 5.974
22 Si 0.969 3.031
23 H -0.288 1.288
24 H -0.302 1.302
25 H -0.267 1.267
26 C -0.114 4.114
27 C -0.196 4.196
28 C 0.127 3.873
29 N -0.559 5.559
30 H 0.120 0.880
31 H 0.062 0.938
32 H 0.050 0.950
33 H 0.139 0.861
34 H 0.135 0.865
35 H 0.153 0.847
36 H 0.420 0.580
37 H 0.041 0.959
38 H 0.095 0.905
39 H 0.066 0.934
40 H 0.024 0.976
41 H 0.088 0.912
42 H 0.037 0.963
43 H 0.370 0.630
44 H 0.246 0.754
45 H 0.112 0.888
46 H 0.059 0.941
47 H 0.165 0.835
48 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.593 11.023 22.784 25.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.235 6.235
3 C 0.117 3.883
4 C -0.217 4.217
5 C -0.003 4.003
6 C -0.132 4.132
7 C 0.294 3.706
8 O -0.466 6.466
9 N -0.360 5.360
10 C 0.047 3.953
11 H 0.056 0.944
12 C -0.146 4.146
13 C -0.146 4.146
14 C -0.166 4.166
15 C 0.056 3.944
16 H 0.071 0.929
17 N -0.376 5.376
18 C -0.362 4.362
19 H 0.096 0.904
20 C -0.274 4.274
21 N -0.625 5.625
22 Si 0.798 3.202
23 H -0.215 1.215
24 H -0.229 1.229
25 H -0.192 1.192
26 C -0.153 4.153
27 C -0.215 4.215
28 C -0.028 4.028
29 N -0.284 5.284
30 H 0.138 0.862
31 H 0.081 0.919
32 H 0.068 0.932
33 H 0.157 0.843
34 H 0.153 0.847
35 H 0.171 0.829
36 H 0.257 0.743
37 H 0.060 0.940
38 H 0.113 0.887
39 H 0.085 0.915
40 H 0.042 0.958
41 H 0.106 0.894
42 H 0.056 0.944
43 H 0.202 0.798
44 H 0.055 0.945
45 H 0.130 0.870
46 H 0.078 0.922
47 H 0.183 0.817
48 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -4.805 10.577 22.014 24.891
hybrid contribution 0.264 -0.872 -1.267 1.561
sum -4.541 9.705 20.747 23.351
Atomic orbital electron populations
1.23018 0.75945 1.04480 1.02151 1.86209 1.24400 1.24884 1.88047
1.20021 0.89855 0.85075 0.93300 1.21111 0.92147 0.99980 1.08489
1.19799 0.96122 0.92030 0.92369 1.20789 0.90180 1.09171 0.93028
1.21103 0.82443 0.75172 0.91865 1.90797 1.56544 1.50830 1.48399
1.45881 1.07158 1.74265 1.08671 1.20691 0.95378 0.96721 0.82502
0.94432 1.21725 1.00495 0.95998 0.96352 1.21297 0.97088 0.99942
0.96289 1.22054 0.96022 0.97830 1.00654 1.20533 0.94178 0.90162
0.89496 0.92861 1.42763 1.13206 1.56974 1.24624 1.19660 0.96632
1.21019 0.98896 0.90362 1.25541 0.96493 1.02640 1.02750 1.69857
1.08436 1.43481 1.40743 0.85197 0.76803 0.78504 0.79648 1.21503
1.22918 1.19221 1.21948 0.94359 1.01764 0.97192 1.22196 0.94678
1.00217 1.04448 1.22933 0.93717 0.93804 0.92298 1.67299 1.41532
0.99443 1.20112 0.86215 0.91882 0.93168 0.84272 0.84692 0.82902
0.74250 0.93976 0.88688 0.91507 0.95756 0.89396 0.94388 0.79753
0.94499 0.87008 0.92244 0.81740 0.79423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.77 10.38 113.37 1.18 1.95 16
2 O -0.33 -9.04 10.48 -89.91 -0.94 -9.99 16
3 C 0.30 8.42 7.49 84.79 0.63 9.05 16
4 C -0.20 -5.18 9.75 22.46 0.22 -4.96 16
5 C 0.00 0.11 4.41 -19.69 -0.09 0.02 16
6 C -0.09 -1.39 5.88 29.10 0.17 -1.21 16
7 C 0.51 13.12 7.79 87.66 0.68 13.81 16
8 O -0.59 -23.08 15.70 -3.03 -0.05 -23.12 16
9 N -0.71 -15.49 5.08 -442.54 -2.25 -17.73 16
10 C 0.15 4.67 2.28 44.99 0.10 4.78 16
11 H 0.04 1.66 5.94 -2.39 -0.01 1.64 16
12 C -0.11 -3.07 5.49 30.59 0.17 -2.90 16
13 C -0.11 -3.67 5.76 30.59 0.18 -3.49 16
14 C -0.13 -4.08 5.61 30.59 0.17 -3.91 16
15 C 0.16 6.04 3.10 44.99 0.14 6.18 16
16 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16
17 N -0.73 -36.94 4.28 -322.92 -1.38 -38.33 16
18 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16
19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16
20 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16
21 N -0.97 -62.86 13.06 21.65 0.28 -62.58 16
22 Si 0.97 47.70 29.55 68.60 2.03 49.72 16
23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16
24 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16
25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
26 C -0.11 -3.18 5.07 30.59 0.16 -3.03 16
27 C -0.20 -3.75 9.81 22.37 0.22 -3.53 16
28 C 0.13 2.64 11.18 84.63 0.95 3.59 16
29 N -0.56 -14.77 9.22 -308.96 -2.85 -17.61 16
30 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16
31 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16
32 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16
33 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16
34 H 0.14 1.35 8.10 -2.39 -0.02 1.33 16
35 H 0.15 0.96 8.10 -2.39 -0.02 0.94 16
36 H 0.42 5.11 8.60 -92.71 -0.80 4.31 16
37 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16
38 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16
39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
40 H 0.02 1.07 7.60 -2.38 -0.02 1.05 16
41 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16
42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
43 H 0.37 20.81 6.06 -92.71 -0.56 20.25 16
44 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16
45 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16
46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16
47 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16
48 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16
Total: -1.00 -84.97 392.25 0.64 -84.33
By element:
Atomic # 1 Polarization: 35.81 SS G_CDS: -0.39 Total: 35.42 kcal
Atomic # 6 Polarization: -6.29 SS G_CDS: 6.18 Total: -0.11 kcal
Atomic # 7 Polarization: -130.06 SS G_CDS: -6.19 Total: -136.26 kcal
Atomic # 8 Polarization: -32.12 SS G_CDS: -0.99 Total: -33.11 kcal
Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal
Total: -84.97 0.64 -84.33 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981335447.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.973 kcal
(2) G-P(sol) polarization free energy of solvation -84.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds