Wall clock time and date at job start Tue Mar 31 2020 17:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35674 * 117.00399 * 2 1 4 4 C 1.38917 * 119.68651 * 180.02562 * 3 2 1 5 5 C 1.38374 * 119.11390 * 179.97438 * 4 3 2 6 6 C 1.50703 * 120.75934 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99838 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47535 * 325.00618 * 10 9 7 12 12 C 1.53003 * 109.47218 * 85.00262 * 10 9 7 13 13 C 1.52992 * 109.47371 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47602 * 300.00379 * 13 12 10 15 15 C 1.53003 * 109.47067 * 59.99435 * 14 13 12 16 16 H 1.09006 * 109.47034 * 180.02562 * 15 14 13 17 17 N 1.46507 * 109.46795 * 60.00552 * 15 14 13 18 18 C 1.36939 * 119.99972 * 85.00008 * 17 15 14 19 19 H 1.07997 * 119.99922 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99533 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00587 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99579 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47176 * 90.00302 * 22 20 18 24 24 H 1.48505 * 109.47068 * 209.99679 * 22 20 18 25 25 H 1.48496 * 109.47618 * 330.00161 * 22 20 18 26 26 C 1.52997 * 109.47181 * 300.00423 * 15 14 13 27 27 C 1.38825 * 118.48510 * 0.27283 * 5 4 3 28 28 C 1.38048 * 119.28956 * 359.45756 * 27 5 4 29 29 N 1.31970 * 120.83103 * 0.55668 * 28 27 5 30 30 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47193 * 300.00404 * 1 2 3 32 32 H 1.08997 * 109.47315 * 60.00010 * 1 2 3 33 33 H 1.08003 * 120.44240 * 359.95464 * 4 3 2 34 34 H 1.09002 * 109.47152 * 329.99931 * 6 5 4 35 35 H 1.09001 * 109.46980 * 210.00031 * 6 5 4 36 36 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.47302 * 299.99899 * 12 10 9 38 38 H 1.09006 * 109.46570 * 59.99667 * 12 10 9 39 39 H 1.08997 * 109.47506 * 180.02562 * 13 12 10 40 40 H 1.09006 * 109.47100 * 60.00538 * 13 12 10 41 41 H 1.09006 * 109.47022 * 300.00206 * 14 13 12 42 42 H 1.09001 * 109.47821 * 179.97438 * 14 13 12 43 43 H 0.96999 * 119.99524 * 264.99371 * 17 15 14 44 44 H 0.97002 * 120.00690 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47340 * 299.99501 * 26 15 14 46 46 H 1.09007 * 109.46591 * 179.97438 * 26 15 14 47 47 H 1.08002 * 120.36051 * 179.70314 * 27 5 4 48 48 H 1.07998 * 119.58659 * 180.27355 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5129 -0.0011 6 6 5.5513 2.6267 -0.0022 7 6 6.0511 2.6645 -1.4235 8 8 5.2644 2.6054 -2.3446 9 7 7.3722 2.7650 -1.6708 10 6 7.8579 2.8023 -3.0523 11 1 7.2315 2.1638 -3.6752 12 6 7.8000 4.2392 -3.5747 13 6 8.3078 4.2783 -5.0174 14 6 9.7526 3.7769 -5.0633 15 6 9.8106 2.3400 -4.5409 16 1 10.8400 1.9829 -4.5732 17 7 8.9689 1.4816 -5.3784 18 6 9.4738 0.9434 -6.5319 19 1 10.4924 1.1513 -6.8241 20 6 8.6764 0.1297 -7.3250 21 7 7.4355 -0.1249 -6.9682 22 14 9.3649 -0.6039 -8.8990 23 1 9.9829 -1.9211 -8.6022 24 1 8.2673 -0.7827 -9.8832 25 1 10.3916 0.3088 -9.4629 26 6 9.3027 2.3009 -3.0982 27 6 3.2507 3.6490 0.0048 28 6 1.8772 3.5096 -0.0005 29 7 1.3187 2.3140 0.0000 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0228 0.3693 -0.0002 34 1 5.9812 1.7667 0.5113 35 1 5.8468 3.5416 0.5113 36 1 8.0012 2.8126 -0.9340 37 1 6.7708 4.5966 -3.5417 38 1 8.4265 4.8777 -2.9518 39 1 8.2670 5.3020 -5.3894 40 1 7.6816 3.6397 -5.6405 41 1 10.3788 4.4155 -4.4402 42 1 10.1143 3.8043 -6.0912 43 1 8.0541 1.2945 -5.1156 44 1 6.8784 -0.6938 -7.5222 45 1 9.9289 2.9394 -2.4752 46 1 9.3436 1.2771 -2.7263 47 1 3.6995 4.6313 0.0093 48 1 1.2519 4.3902 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981335447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:38 Heat of formation + Delta-G solvation = -64.359187 kcal Electronic energy + Delta-G solvation = -28574.452738 eV Core-core repulsion = 24628.352753 eV Total energy + Delta-G solvation = -3946.099985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74259 -40.95915 -39.49222 -38.76466 -35.99310 -34.81661 -34.63886 -32.69571 -31.73271 -31.01755 -29.91657 -28.98468 -27.92996 -25.68667 -24.48003 -23.81249 -23.28001 -22.59154 -21.41769 -20.06375 -19.23506 -18.90426 -18.14098 -18.01560 -17.21480 -16.97251 -16.87349 -16.54334 -16.21976 -15.78111 -15.49062 -15.32015 -15.19725 -15.17754 -15.01837 -14.64206 -14.23871 -13.86228 -13.73010 -13.44185 -13.38222 -13.19455 -12.89010 -12.83733 -12.81363 -12.58508 -12.48637 -12.18084 -12.15612 -12.13508 -11.79773 -11.54933 -11.44869 -11.18439 -10.98563 -10.81506 -10.68262 -10.47295 -9.95665 -9.48884 -8.95164 -7.90746 -5.18339 0.16756 0.24524 1.45120 1.47011 1.55244 1.71401 2.09942 2.27673 2.57429 2.82996 3.34708 3.42650 3.57734 3.79081 3.91357 3.97289 4.03972 4.13210 4.15868 4.19337 4.23783 4.39449 4.39613 4.41713 4.48334 4.55094 4.58812 4.62619 4.72303 4.72937 4.78275 4.80718 4.84716 4.92310 5.04156 5.12947 5.25530 5.31608 5.33167 5.45979 5.48079 5.50730 5.55704 5.68311 5.69474 6.23917 6.30971 6.67575 6.84812 7.36460 7.40037 8.17201 8.36839 9.32707 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002753 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.136255 B =10167.548619 C =11750.837247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.328 6.328 3 C 0.295 3.705 4 C -0.197 4.197 5 C 0.005 3.995 6 C -0.093 4.093 7 C 0.507 3.493 8 O -0.586 6.586 9 N -0.707 5.707 10 C 0.152 3.848 11 H 0.037 0.963 12 C -0.107 4.107 13 C -0.108 4.108 14 C -0.126 4.126 15 C 0.165 3.835 16 H 0.053 0.947 17 N -0.735 5.735 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.083 4.083 21 N -0.974 5.974 22 Si 0.969 3.031 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.267 1.267 26 C -0.114 4.114 27 C -0.196 4.196 28 C 0.127 3.873 29 N -0.559 5.559 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.420 0.580 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.370 0.630 44 H 0.246 0.754 45 H 0.112 0.888 46 H 0.059 0.941 47 H 0.165 0.835 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 11.023 22.784 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.235 6.235 3 C 0.117 3.883 4 C -0.217 4.217 5 C -0.003 4.003 6 C -0.132 4.132 7 C 0.294 3.706 8 O -0.466 6.466 9 N -0.360 5.360 10 C 0.047 3.953 11 H 0.056 0.944 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.166 4.166 15 C 0.056 3.944 16 H 0.071 0.929 17 N -0.376 5.376 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.274 4.274 21 N -0.625 5.625 22 Si 0.798 3.202 23 H -0.215 1.215 24 H -0.229 1.229 25 H -0.192 1.192 26 C -0.153 4.153 27 C -0.215 4.215 28 C -0.028 4.028 29 N -0.284 5.284 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.202 0.798 44 H 0.055 0.945 45 H 0.130 0.870 46 H 0.078 0.922 47 H 0.183 0.817 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.805 10.577 22.014 24.891 hybrid contribution 0.264 -0.872 -1.267 1.561 sum -4.541 9.705 20.747 23.351 Atomic orbital electron populations 1.23018 0.75945 1.04480 1.02151 1.86209 1.24400 1.24884 1.88047 1.20021 0.89855 0.85075 0.93300 1.21111 0.92147 0.99980 1.08489 1.19799 0.96122 0.92030 0.92369 1.20789 0.90180 1.09171 0.93028 1.21103 0.82443 0.75172 0.91865 1.90797 1.56544 1.50830 1.48399 1.45881 1.07158 1.74265 1.08671 1.20691 0.95378 0.96721 0.82502 0.94432 1.21725 1.00495 0.95998 0.96352 1.21297 0.97088 0.99942 0.96289 1.22054 0.96022 0.97830 1.00654 1.20533 0.94178 0.90162 0.89496 0.92861 1.42763 1.13206 1.56974 1.24624 1.19660 0.96632 1.21019 0.98896 0.90362 1.25541 0.96493 1.02640 1.02750 1.69857 1.08436 1.43481 1.40743 0.85197 0.76803 0.78504 0.79648 1.21503 1.22918 1.19221 1.21948 0.94359 1.01764 0.97192 1.22196 0.94678 1.00217 1.04448 1.22933 0.93717 0.93804 0.92298 1.67299 1.41532 0.99443 1.20112 0.86215 0.91882 0.93168 0.84272 0.84692 0.82902 0.74250 0.93976 0.88688 0.91507 0.95756 0.89396 0.94388 0.79753 0.94499 0.87008 0.92244 0.81740 0.79423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.38 113.37 1.18 1.95 16 2 O -0.33 -9.04 10.48 -89.91 -0.94 -9.99 16 3 C 0.30 8.42 7.49 84.79 0.63 9.05 16 4 C -0.20 -5.18 9.75 22.46 0.22 -4.96 16 5 C 0.00 0.11 4.41 -19.69 -0.09 0.02 16 6 C -0.09 -1.39 5.88 29.10 0.17 -1.21 16 7 C 0.51 13.12 7.79 87.66 0.68 13.81 16 8 O -0.59 -23.08 15.70 -3.03 -0.05 -23.12 16 9 N -0.71 -15.49 5.08 -442.54 -2.25 -17.73 16 10 C 0.15 4.67 2.28 44.99 0.10 4.78 16 11 H 0.04 1.66 5.94 -2.39 -0.01 1.64 16 12 C -0.11 -3.07 5.49 30.59 0.17 -2.90 16 13 C -0.11 -3.67 5.76 30.59 0.18 -3.49 16 14 C -0.13 -4.08 5.61 30.59 0.17 -3.91 16 15 C 0.16 6.04 3.10 44.99 0.14 6.18 16 16 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 17 N -0.73 -36.94 4.28 -322.92 -1.38 -38.33 16 18 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 21 N -0.97 -62.86 13.06 21.65 0.28 -62.58 16 22 Si 0.97 47.70 29.55 68.60 2.03 49.72 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.11 -3.18 5.07 30.59 0.16 -3.03 16 27 C -0.20 -3.75 9.81 22.37 0.22 -3.53 16 28 C 0.13 2.64 11.18 84.63 0.95 3.59 16 29 N -0.56 -14.77 9.22 -308.96 -2.85 -17.61 16 30 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 32 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.14 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.15 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.42 5.11 8.60 -92.71 -0.80 4.31 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.02 1.07 7.60 -2.38 -0.02 1.05 16 41 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.37 20.81 6.06 -92.71 -0.56 20.25 16 44 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 48 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -84.97 392.25 0.64 -84.33 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.39 Total: 35.42 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.18 Total: -0.11 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -6.19 Total: -136.26 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.99 Total: -33.11 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -84.97 0.64 -84.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981335447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.973 kcal (2) G-P(sol) polarization free energy of solvation -84.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds