Wall clock time and date at job start Tue Mar 31 2020 17:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35908 * 117.00146 * 2 1 4 4 C 1.38745 * 120.47582 * 0.02562 * 3 2 1 5 5 N 1.31815 * 120.68120 * 179.97438 * 4 3 2 6 6 C 1.31872 * 121.77994 * 359.70247 * 5 4 3 7 7 C 1.38204 * 120.88844 * 0.59002 * 6 5 4 8 8 C 1.50708 * 120.39014 * 179.69910 * 7 6 5 9 9 C 1.52994 * 109.47072 * 269.72267 * 8 7 6 10 10 C 1.50697 * 109.47072 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00139 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00064 * 179.97438 * 10 9 8 13 13 C 1.48216 * 119.97022 * 180.02562 * 12 10 9 14 14 C 1.47140 * 110.34294 * 102.51487 * 13 12 10 15 15 C 1.53804 * 111.83676 * 58.29687 * 14 13 12 16 16 N 1.43463 * 107.95924 * 281.66466 * 15 14 13 17 17 C 1.36933 * 118.94007 * 273.61253 * 16 15 14 18 18 H 1.08002 * 120.00147 * 27.13481 * 17 16 15 19 19 C 1.38809 * 119.99948 * 207.13877 * 17 16 15 20 20 N 1.31626 * 120.00402 * 26.50340 * 19 17 16 21 21 Si 1.86806 * 120.00082 * 206.50314 * 19 17 16 22 22 H 1.48495 * 109.47040 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.46691 * 60.00007 * 21 19 17 24 24 H 1.48493 * 109.46986 * 299.99848 * 21 19 17 25 25 C 1.48862 * 122.11771 * 93.89532 * 16 15 14 26 26 C 1.43623 * 119.96948 * 0.02970 * 12 10 9 27 27 C 1.38581 * 119.22482 * 359.42417 * 7 6 5 28 28 H 1.08994 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46995 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.46911 * 59.99794 * 1 2 3 31 31 H 1.08003 * 119.65877 * 359.95901 * 4 3 2 32 32 H 1.08003 * 119.55349 * 180.30893 * 6 5 4 33 33 H 1.08996 * 109.47247 * 149.72205 * 8 7 6 34 34 H 1.09006 * 109.46847 * 29.72336 * 8 7 6 35 35 H 1.09004 * 109.46974 * 60.00138 * 9 8 7 36 36 H 1.08998 * 109.47482 * 300.00056 * 9 8 7 37 37 H 1.09001 * 109.32644 * 342.24552 * 13 12 10 38 38 H 1.09003 * 109.17959 * 222.69361 * 13 12 10 39 39 H 1.08991 * 109.00643 * 297.69367 * 14 13 12 40 40 H 1.08995 * 108.94557 * 178.85937 * 14 13 12 41 41 H 1.08997 * 109.75985 * 162.04886 * 15 14 13 42 42 H 1.09000 * 109.80621 * 41.30949 * 15 14 13 43 43 H 0.97004 * 119.99471 * 5.78207 * 20 19 17 44 44 H 1.08990 * 109.47787 * 80.34441 * 25 16 15 45 45 H 1.09006 * 109.47588 * 200.37966 * 25 16 15 46 46 H 1.08999 * 108.87197 * 31.42003 * 26 12 10 47 47 H 1.08996 * 108.87418 * 149.95927 * 26 12 10 48 48 H 1.07998 * 120.81467 * 180.25146 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.3002 2.3808 0.0005 5 7 1.8944 3.5574 0.0010 6 6 3.2081 3.6720 0.0069 7 6 4.0180 2.5521 0.0005 8 6 5.5182 2.6961 0.0005 9 6 6.0257 2.7455 -1.4420 10 6 7.5257 2.8902 -1.4420 11 8 8.1294 2.9476 -0.3918 12 7 8.1965 2.9547 -2.6092 13 6 9.6719 3.0964 -2.6085 14 6 10.3100 1.8047 -2.9073 15 6 9.8576 1.2439 -4.2662 16 7 8.5559 0.6656 -4.0949 17 6 8.4583 -0.6344 -3.6758 18 1 9.2452 -1.0694 -3.0775 19 6 7.3481 -1.3931 -4.0202 20 7 6.6712 -1.1106 -5.1132 21 14 6.8147 -2.8151 -2.9326 22 1 5.6108 -3.4598 -3.5158 23 1 6.4944 -2.3064 -1.5746 24 1 7.9143 -3.8088 -2.8424 25 6 7.3080 1.4314 -4.3639 26 6 7.4810 2.8862 -3.8527 27 6 3.4345 1.2951 0.0000 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2215 2.3268 0.0003 32 1 3.6572 4.6542 0.0122 33 1 5.9650 1.8448 0.5139 34 1 5.7948 3.6166 0.5148 35 1 5.5789 3.5970 -1.9554 36 1 5.7491 1.8252 -1.9563 37 1 10.0005 3.4430 -1.6287 38 1 9.9620 3.8257 -3.3649 39 1 10.0509 1.0914 -2.1250 40 1 11.3915 1.9390 -2.9211 41 1 10.5591 0.4801 -4.6016 42 1 9.8099 2.0483 -5.0003 43 1 6.9951 -0.4279 -5.7214 44 1 7.1110 1.4402 -5.4358 45 1 6.4734 0.9604 -3.8444 46 1 6.4955 3.3318 -3.7173 47 1 8.0254 3.4573 -4.6047 48 1 4.0429 0.4028 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981590687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:13 Heat of formation + Delta-G solvation = -33.899226 kcal Electronic energy + Delta-G solvation = -29698.481699 eV Core-core repulsion = 25753.702557 eV Total energy + Delta-G solvation = -3944.779142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76115 -41.21783 -39.26582 -38.75137 -36.18173 -35.63370 -34.44173 -32.75856 -32.38605 -30.79758 -29.25638 -28.41403 -27.17401 -25.86592 -25.53113 -24.57389 -23.38260 -22.15703 -21.51399 -19.85809 -19.34125 -18.90703 -18.14730 -18.00187 -17.64441 -17.44555 -16.84527 -16.65269 -16.12249 -16.03766 -15.51901 -15.42020 -15.12582 -14.79444 -14.58878 -14.42256 -14.29049 -14.20169 -14.10073 -13.84417 -13.57392 -13.16452 -13.07700 -12.93551 -12.77086 -12.69295 -12.54794 -12.42470 -12.20887 -12.05954 -11.98579 -11.83940 -11.79572 -11.30966 -10.87473 -10.50320 -10.46190 -10.38989 -9.60096 -9.45911 -8.87929 -8.20624 -5.37187 0.02220 0.22351 1.51403 1.56499 1.62829 1.75559 2.13358 2.22793 2.60837 2.71905 3.17272 3.39478 3.55089 3.59760 3.64947 3.86876 3.91107 3.97538 4.05033 4.10249 4.12171 4.19464 4.27209 4.35303 4.37307 4.41880 4.43173 4.50430 4.58375 4.65692 4.72652 4.73158 4.82766 4.87199 4.91886 4.98370 5.01720 5.09052 5.17206 5.19860 5.28049 5.42409 5.49245 5.72190 5.87402 6.21741 6.41857 6.51533 6.88451 7.14383 7.21487 7.82753 8.20237 9.01114 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.004276 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.876705 B = 6546.268357 C = 8424.629794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.075 3.925 4 C 0.011 3.989 5 N -0.463 5.463 6 C 0.064 3.936 7 C -0.086 4.086 8 C -0.050 4.050 9 C -0.128 4.128 10 C 0.515 3.485 11 O -0.586 6.586 12 N -0.588 5.588 13 C 0.127 3.873 14 C -0.153 4.153 15 C 0.160 3.840 16 N -0.608 5.608 17 C -0.353 4.353 18 H 0.033 0.967 19 C -0.059 4.059 20 N -0.936 5.936 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.142 3.858 26 C 0.098 3.902 27 C -0.127 4.127 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.024 0.976 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.059 0.941 43 H 0.259 0.741 44 H 0.024 0.976 45 H 0.035 0.965 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 11.423 6.858 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.027 3.973 4 C -0.147 4.147 5 N -0.171 5.171 6 C -0.094 4.094 7 C -0.088 4.088 8 C -0.089 4.089 9 C -0.167 4.167 10 C 0.305 3.695 11 O -0.467 6.467 12 N -0.319 5.319 13 C 0.005 3.995 14 C -0.194 4.194 15 C 0.033 3.967 16 N -0.332 5.332 17 C -0.483 4.483 18 H 0.051 0.949 19 C -0.257 4.257 20 N -0.578 5.578 21 Si 0.917 3.083 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.016 3.984 26 C -0.027 4.027 27 C -0.153 4.153 28 H 0.137 0.863 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.200 0.800 32 H 0.200 0.800 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.054 0.946 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.916 10.845 7.576 16.533 hybrid contribution 1.726 -0.449 -0.409 1.830 sum -8.190 10.395 7.167 15.050 Atomic orbital electron populations 1.23453 0.75738 1.06030 1.02798 1.86103 1.24114 1.26034 1.88343 1.20154 0.92920 0.86500 0.97704 1.23244 1.01612 0.86548 1.03283 1.67593 1.12452 1.26795 1.10287 1.22907 0.88347 0.99296 0.98844 1.20709 0.97033 0.92805 0.98254 1.20173 0.88745 1.04466 0.95506 1.21646 0.90993 1.05001 0.99065 1.20950 0.90860 0.74601 0.83102 1.90607 1.71269 1.52656 1.32195 1.47515 1.07811 1.70694 1.05838 1.20670 0.78559 0.97276 1.02955 1.21635 1.00451 0.97477 0.99798 1.20433 0.86201 0.95892 0.94208 1.43885 1.00881 1.09419 1.79007 1.19987 1.09033 0.90196 1.29093 0.94919 1.26606 0.97475 1.03100 0.98530 1.70919 1.44277 1.33328 1.09230 0.83174 0.76224 0.74350 0.74594 1.21345 1.21550 1.20654 1.22077 0.88500 0.91050 0.96755 1.21914 0.98379 0.96539 0.85912 1.21063 0.92562 0.99000 1.02709 0.86292 0.90766 0.91266 0.79975 0.80040 0.91828 0.88274 0.85971 0.90242 0.90678 0.88397 0.95756 0.89765 0.95180 0.92233 0.93102 0.95780 0.94616 0.88335 0.88900 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.82 113.37 1.11 1.31 16 2 O -0.33 -8.31 10.51 -92.51 -0.97 -9.29 16 3 C 0.07 1.96 6.71 22.60 0.15 2.11 16 4 C 0.01 0.25 10.22 84.82 0.87 1.11 16 5 N -0.46 -11.37 10.36 -195.45 -2.02 -13.39 16 6 C 0.06 1.46 10.85 84.68 0.92 2.38 16 7 C -0.09 -2.21 5.15 -19.79 -0.10 -2.31 16 8 C -0.05 -1.35 4.66 29.85 0.14 -1.21 16 9 C -0.13 -3.66 4.24 29.85 0.13 -3.54 16 10 C 0.52 17.88 7.67 87.66 0.67 18.56 16 11 O -0.59 -23.68 15.42 -3.02 -0.05 -23.73 16 12 N -0.59 -19.14 2.46 -830.59 -2.04 -21.19 16 13 C 0.13 3.82 5.70 84.23 0.48 4.30 16 14 C -0.15 -5.32 5.64 29.04 0.16 -5.16 16 15 C 0.16 6.24 5.63 87.21 0.49 6.73 16 16 N -0.61 -28.71 2.38 -697.47 -1.66 -30.37 16 17 C -0.35 -19.59 9.12 84.03 0.77 -18.82 16 18 H 0.03 1.92 7.96 -2.91 -0.02 1.89 16 19 C -0.06 -3.32 4.60 84.86 0.39 -2.93 16 20 N -0.94 -55.02 12.63 21.65 0.27 -54.74 16 21 Si 1.09 52.21 29.99 68.60 2.06 54.26 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C 0.14 5.96 5.09 86.67 0.44 6.40 16 26 C 0.10 2.94 5.06 87.66 0.44 3.38 16 27 C -0.13 -3.64 9.81 22.56 0.22 -3.42 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 0.77 7.68 -2.39 -0.02 0.76 16 30 H 0.07 0.82 7.68 -2.39 -0.02 0.80 16 31 H 0.18 2.92 6.32 -2.91 -0.02 2.90 16 32 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 34 H 0.10 2.36 8.05 -2.38 -0.02 2.34 16 35 H 0.12 2.68 7.37 -2.38 -0.02 2.66 16 36 H 0.08 2.69 7.35 -2.39 -0.02 2.67 16 37 H 0.07 2.36 7.12 -2.39 -0.02 2.34 16 38 H 0.10 2.26 8.05 -2.39 -0.02 2.24 16 39 H 0.02 1.05 7.91 -2.39 -0.02 1.03 16 40 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.03 1.26 8.02 -2.39 -0.02 1.24 16 42 H 0.06 1.99 7.59 -2.39 -0.02 1.98 16 43 H 0.26 15.21 6.37 -92.70 -0.59 14.62 16 44 H 0.02 1.06 7.11 -2.39 -0.02 1.05 16 45 H 0.04 1.72 6.23 -2.38 -0.01 1.71 16 46 H 0.10 2.42 6.38 -2.39 -0.02 2.41 16 47 H 0.09 2.32 7.72 -2.39 -0.02 2.30 16 48 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -73.91 380.37 4.00 -69.91 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.13 Total: 19.64 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 7.28 Total: 8.89 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -5.46 Total: -119.69 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.02 Total: -33.01 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.06 Total: 54.26 kcal Total: -73.91 4.00 -69.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981590687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.008 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds