Wall clock time and date at job start Tue Mar 31 2020 17:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35677 * 116.99940 * 2 1 4 4 C 1.38924 * 119.68289 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10770 * 180.02562 * 4 3 2 6 6 C 1.38825 * 118.48457 * 359.97438 * 5 4 3 7 7 C 1.50708 * 120.35097 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47072 * 89.99954 * 7 6 5 9 9 C 1.50697 * 109.47072 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00139 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00064 * 179.97438 * 9 8 7 12 12 C 1.48216 * 119.97022 * 180.02562 * 11 9 8 13 13 C 1.47140 * 110.34294 * 102.51487 * 12 11 9 14 14 C 1.53804 * 111.83676 * 58.29687 * 13 12 11 15 15 N 1.43463 * 107.95924 * 281.66466 * 14 13 12 16 16 C 1.36933 * 118.94007 * 273.61253 * 15 14 13 17 17 H 1.08002 * 120.00147 * 27.13481 * 16 15 14 18 18 C 1.38809 * 119.99948 * 207.13877 * 16 15 14 19 19 N 1.31626 * 120.00402 * 26.50340 * 18 16 15 20 20 Si 1.86806 * 120.00082 * 206.50314 * 18 16 15 21 21 H 1.48504 * 109.47075 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.46691 * 60.00007 * 20 18 16 23 23 H 1.48493 * 109.46986 * 299.99848 * 20 18 16 24 24 C 1.48862 * 122.11771 * 93.89532 * 15 14 13 25 25 C 1.43623 * 119.96948 * 0.02970 * 11 9 8 26 26 C 1.38044 * 119.29277 * 0.25308 * 6 5 4 27 27 N 1.31960 * 120.83088 * 359.45493 * 26 6 5 28 28 H 1.09005 * 109.47233 * 60.00346 * 1 2 3 29 29 H 1.08998 * 109.46971 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47051 * 299.99884 * 1 2 3 31 31 H 1.07997 * 120.44486 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.75482 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47247 * 329.99892 * 7 6 5 34 34 H 1.09006 * 109.46847 * 210.00023 * 7 6 5 35 35 H 1.09004 * 109.46974 * 60.00138 * 8 7 6 36 36 H 1.08998 * 109.47482 * 300.00056 * 8 7 6 37 37 H 1.09001 * 109.32644 * 342.24552 * 12 11 9 38 38 H 1.09003 * 109.17959 * 222.69361 * 12 11 9 39 39 H 1.08991 * 109.00643 * 297.69367 * 13 12 11 40 40 H 1.08995 * 108.94557 * 178.85937 * 13 12 11 41 41 H 1.08997 * 109.75985 * 162.04886 * 14 13 12 42 42 H 1.09000 * 109.80621 * 41.30949 * 14 13 12 43 43 H 0.97004 * 119.99471 * 5.78207 * 19 18 16 44 44 H 1.08990 * 109.47787 * 80.34441 * 24 15 14 45 45 H 1.09006 * 109.47588 * 200.37966 * 24 15 14 46 46 H 1.08999 * 108.87197 * 31.42003 * 25 11 9 47 47 H 1.08996 * 108.87418 * 149.95927 * 25 11 9 48 48 H 1.08000 * 119.58456 * 179.72451 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0484 2.5132 0.0011 6 6 3.2504 3.6491 0.0005 7 6 3.8767 5.0199 0.0016 8 6 4.0903 5.4841 -1.4404 9 6 4.7161 6.8551 -1.4393 10 8 4.9669 7.4063 -0.3886 11 7 4.9979 7.4682 -2.6060 12 6 5.6138 8.8163 -2.6041 13 6 7.0519 8.7220 -2.9007 14 6 7.3131 8.0499 -4.2592 15 7 7.1617 6.6335 -4.0883 16 6 8.2376 5.8981 -3.6677 17 1 9.0071 6.3614 -3.0680 18 6 8.3391 4.5573 -4.0121 19 7 7.7575 4.1128 -5.1060 20 14 9.3012 3.3835 -2.9230 21 1 9.2576 2.0186 -3.5065 22 1 8.6984 3.3607 -1.5660 23 1 10.7119 3.8379 -2.8305 24 6 5.8745 5.9367 -4.3595 25 6 4.7009 6.8146 -3.8500 26 6 1.8770 3.5097 0.0047 27 7 1.3186 2.3141 -0.0015 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0228 0.3695 0.0005 32 1 5.1254 2.5948 0.0019 33 1 4.8366 4.9803 0.5165 34 1 3.2176 5.7201 0.5150 35 1 3.1304 5.5237 -1.9553 36 1 4.7494 4.7840 -1.9538 37 1 5.4768 9.2741 -1.6245 38 1 5.1290 9.4326 -3.3612 39 1 7.5385 8.1406 -2.1176 40 1 7.4771 9.7255 -2.9136 41 1 8.3260 8.2747 -4.5929 42 1 6.5941 8.4114 -4.9944 43 1 7.3296 4.7351 -5.7148 44 1 5.7700 5.7706 -5.4315 45 1 5.8637 4.9783 -3.8402 46 1 3.8217 6.1846 -3.7161 47 1 4.4804 7.5719 -4.6023 48 1 1.2516 4.3902 0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981599917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:47 Heat of formation + Delta-G solvation = -14.022156 kcal Electronic energy + Delta-G solvation = -29518.050210 eV Core-core repulsion = 25574.133003 eV Total energy + Delta-G solvation = -3943.917207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.72660 -39.84323 -38.15944 -37.16349 -34.49558 -34.15509 -32.89460 -32.18019 -30.84269 -29.64502 -27.72076 -27.32792 -25.58452 -24.48893 -23.72865 -23.48158 -22.16626 -21.06507 -19.80113 -18.48230 -18.45003 -17.48608 -17.19219 -16.70907 -16.11203 -15.97207 -15.34967 -15.10131 -14.59373 -14.49455 -14.28640 -14.15046 -13.76565 -13.69797 -13.50542 -13.12856 -13.04266 -12.89651 -12.64354 -12.35400 -12.22066 -12.06552 -11.89498 -11.62398 -11.28546 -11.16345 -11.11594 -10.96944 -10.73229 -10.34264 -10.31689 -10.29247 -10.03511 -9.89291 -9.68069 -9.41718 -9.36252 -8.41511 -8.35315 -8.15806 -6.91929 -6.09676 -3.27034 1.08711 1.22480 2.99663 3.03550 3.44687 3.46883 3.49133 3.67452 3.72557 4.23518 4.56459 4.67035 4.89635 4.93699 4.99733 5.07992 5.10264 5.14493 5.23109 5.23803 5.31595 5.38090 5.45380 5.50522 5.51540 5.61435 5.66387 5.73310 5.83710 5.91235 5.94048 5.96412 6.01559 6.15290 6.21298 6.33140 6.38881 6.41282 6.42792 6.64669 6.73570 6.89274 6.93634 7.13423 7.15927 7.76328 7.87526 8.03150 8.53715 8.60377 9.12105 9.81093 10.20598 11.16380 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.003722 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.896969 B = 7520.325868 C = 9019.156382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.309 3.691 4 C -0.184 4.184 5 C -0.034 4.034 6 C -0.164 4.164 7 C -0.053 4.053 8 C -0.136 4.136 9 C 0.522 3.478 10 O -0.557 6.557 11 N -0.586 5.586 12 C 0.129 3.871 13 C -0.168 4.168 14 C 0.164 3.836 15 N -0.594 5.594 16 C -0.352 4.352 17 H 0.053 0.947 18 C -0.018 4.018 19 N -0.914 5.914 20 Si 1.054 2.946 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.138 3.862 25 C 0.088 3.912 26 C 0.139 3.861 27 N -0.540 5.540 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.030 0.970 43 H 0.268 0.732 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 -0.543 6.890 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.131 3.869 4 C -0.204 4.204 5 C -0.059 4.059 6 C -0.166 4.166 7 C -0.092 4.092 8 C -0.175 4.175 9 C 0.311 3.689 10 O -0.436 6.436 11 N -0.317 5.317 12 C 0.008 3.992 13 C -0.209 4.209 14 C 0.036 3.964 15 N -0.316 5.316 16 C -0.481 4.481 17 H 0.071 0.929 18 C -0.221 4.221 19 N -0.554 5.554 20 Si 0.884 3.116 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.012 3.988 25 C -0.038 4.038 26 C -0.016 4.016 27 N -0.263 5.263 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.583 -2.202 7.615 15.726 hybrid contribution 0.402 1.737 -0.417 1.831 sum -13.181 -0.465 7.198 15.025 Atomic orbital electron populations 1.22816 0.77500 1.02700 1.02359 1.86232 1.22714 1.24741 1.88075 1.19830 0.89444 0.84619 0.93039 1.21093 0.91925 0.99677 1.07748 1.21472 1.01049 0.90691 0.92694 1.20790 0.94665 0.96608 1.04584 1.20176 1.01895 0.91185 0.95906 1.21707 1.02203 0.95089 0.98533 1.20477 0.78016 0.87115 0.83300 1.90624 1.55003 1.66852 1.31118 1.47366 1.60640 1.17928 1.05741 1.20552 0.94069 0.82764 1.01817 1.21825 0.95908 1.00262 1.02898 1.20285 0.98559 0.85110 0.92467 1.43675 1.06922 1.02169 1.78854 1.19906 1.02526 0.95569 1.30101 0.92910 1.25701 1.01155 0.97149 0.98070 1.70832 1.37384 1.38831 1.08340 0.83685 0.75745 0.76600 0.75607 1.21068 1.22063 1.21976 1.22161 0.83937 0.95102 0.97647 1.22003 0.98860 0.97203 0.85752 1.22267 0.92225 0.93469 0.93648 1.67281 1.40898 0.98786 1.19376 0.92361 0.88840 0.92467 0.84062 0.83722 0.89898 0.90223 0.89375 0.88124 0.90387 0.92266 0.91224 0.92680 0.93526 0.95122 0.92117 0.94763 0.91280 0.91283 0.91849 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.86 10.48 -18.73 -0.20 -4.06 16 3 C 0.31 4.14 7.49 -17.12 -0.13 4.01 16 4 C -0.18 -2.33 10.04 -39.27 -0.39 -2.72 16 5 C -0.03 -0.43 9.85 -39.31 -0.39 -0.82 16 6 C -0.16 -2.05 5.15 -104.47 -0.54 -2.59 16 7 C -0.05 -0.70 4.66 -27.88 -0.13 -0.83 16 8 C -0.14 -1.97 4.24 -27.89 -0.12 -2.08 16 9 C 0.52 9.22 7.67 -10.99 -0.08 9.13 16 10 O -0.56 -11.26 15.42 5.56 0.09 -11.17 16 11 N -0.59 -10.02 2.46 -176.46 -0.43 -10.46 16 12 C 0.13 2.11 5.70 -5.91 -0.03 2.07 16 13 C -0.17 -3.01 5.64 -29.13 -0.16 -3.17 16 14 C 0.16 3.26 5.63 -5.23 -0.03 3.23 16 15 N -0.59 -13.78 2.38 -171.81 -0.41 -14.19 16 16 C -0.35 -9.41 9.12 -15.06 -0.14 -9.54 16 17 H 0.05 1.47 7.96 -52.49 -0.42 1.06 16 18 C -0.02 -0.50 4.60 -17.43 -0.08 -0.58 16 19 N -0.91 -25.99 12.63 55.49 0.70 -25.29 16 20 Si 1.05 24.69 29.99 -169.99 -5.10 19.59 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.14 2.88 5.09 -1.59 -0.01 2.87 16 25 C 0.09 1.42 5.06 -4.42 -0.02 1.40 16 26 C 0.14 1.67 10.85 -17.57 -0.19 1.48 16 27 N -0.54 -7.12 9.22 -13.33 -0.12 -7.25 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 34 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 35 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 36 H 0.10 1.63 7.35 -51.93 -0.38 1.25 16 37 H 0.08 1.30 7.12 -51.93 -0.37 0.93 16 38 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 42 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 43 H 0.27 7.61 6.37 -40.82 -0.26 7.35 16 44 H 0.03 0.75 7.11 -51.93 -0.37 0.38 16 45 H 0.07 1.61 6.23 -51.93 -0.32 1.29 16 46 H 0.07 0.95 6.38 -51.93 -0.33 0.62 16 47 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 48 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -32.11 382.98 -8.56 -40.67 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.46 Total: 3.09 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.40 Total: 3.29 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.27 Total: -57.18 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.11 Total: -15.23 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.10 Total: 19.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.11 -8.56 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981599917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.647 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds