Wall clock time and date at job start Tue Mar 31 2020 17:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99716 * 2 1 4 4 H 1.08002 * 119.99467 * 202.98808 * 3 2 1 5 5 C 1.38813 * 120.00091 * 23.00066 * 3 2 1 6 6 N 1.31610 * 120.00057 * 11.63052 * 5 3 2 7 7 Si 1.86799 * 119.99601 * 191.63484 * 5 3 2 8 8 H 1.48494 * 109.47429 * 59.99530 * 7 5 3 9 9 H 1.48503 * 109.46810 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47192 * 299.99411 * 7 5 3 11 11 C 1.46506 * 119.99780 * 180.02562 * 2 1 3 12 12 C 1.53040 * 109.45829 * 299.99892 * 11 2 1 13 13 C 1.53193 * 109.30875 * 181.38961 * 12 11 2 14 14 N 1.46926 * 108.77450 * 305.36094 * 13 12 11 15 15 C 1.34779 * 120.63265 * 233.58994 * 14 13 12 16 16 O 1.21277 * 119.99600 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00024 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47080 * 179.97438 * 17 15 14 19 19 N 1.46498 * 109.47184 * 179.97438 * 18 17 15 20 20 C 1.35759 * 119.62615 * 89.99768 * 19 18 17 21 21 C 1.35352 * 120.70442 * 179.97438 * 20 19 18 22 22 C 1.40194 * 119.94738 * 0.02562 * 21 20 19 23 23 C 1.36401 * 119.26616 * 359.97438 * 22 21 20 24 24 C 1.34660 * 119.62421 * 269.98132 * 19 18 17 25 25 O 1.22055 * 119.98910 * 0.02562 * 24 19 18 26 26 C 1.46931 * 118.73735 * 53.86342 * 14 13 12 27 27 C 1.53039 * 109.46002 * 60.06657 * 11 2 1 28 28 H 1.09005 * 109.47335 * 273.84247 * 1 2 3 29 29 H 1.09000 * 109.47559 * 33.84640 * 1 2 3 30 30 H 1.09004 * 109.47358 * 153.84241 * 1 2 3 31 31 H 0.97000 * 120.00000 * 180.02562 * 6 5 3 32 32 H 1.08995 * 109.44634 * 180.02562 * 11 2 1 33 33 H 1.08998 * 109.49872 * 61.43490 * 12 11 2 34 34 H 1.09000 * 109.52359 * 301.35082 * 12 11 2 35 35 H 1.08996 * 109.58424 * 185.57921 * 13 12 11 36 36 H 1.08998 * 109.70275 * 65.22139 * 13 12 11 37 37 H 1.09008 * 109.47533 * 59.99458 * 17 15 14 38 38 H 1.08997 * 109.47140 * 299.99618 * 17 15 14 39 39 H 1.09000 * 109.46902 * 60.00209 * 18 17 15 40 40 H 1.08997 * 109.47145 * 300.00010 * 18 17 15 41 41 H 1.07999 * 119.64830 * 0.26236 * 20 19 18 42 42 H 1.08003 * 120.02613 * 179.97438 * 21 20 19 43 43 H 1.08001 * 120.36663 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.34406 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.58391 * 65.92560 * 26 14 13 46 46 H 1.08996 * 109.58604 * 186.35123 * 26 14 13 47 47 H 1.08994 * 109.50305 * 298.56636 * 27 11 2 48 48 H 1.09003 * 109.49870 * 58.66485 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1653 1.2230 -0.3653 5 6 1.5383 2.3403 0.4697 6 7 0.3979 2.2622 1.1220 7 14 2.3343 4.0044 0.1758 8 1 2.4683 4.2381 -1.2845 9 1 1.4885 5.0698 0.7716 10 1 3.6785 4.0285 0.8063 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0716 1.2488 13 6 2.6212 -3.3818 1.2624 14 7 2.3849 -4.0910 -0.0025 15 6 1.9587 -5.3696 -0.0037 16 8 1.7671 -5.9458 1.0461 17 6 1.7213 -6.0836 -1.3094 18 6 1.2461 -7.5110 -1.0311 19 7 1.0148 -8.2049 -2.3004 20 6 2.0285 -8.8956 -2.8821 21 6 1.8388 -9.5450 -4.0544 22 6 0.5849 -9.5078 -4.6803 23 6 -0.4324 -8.8133 -4.0943 24 6 -0.2011 -8.1507 -2.8768 25 8 -1.1025 -7.5255 -2.3417 26 6 2.6278 -3.3818 -1.2662 27 6 1.8288 -2.0698 -1.2514 28 1 -0.3634 0.0689 1.0254 29 1 -0.3634 0.8535 -0.5724 30 1 -0.3634 -0.9224 -0.4530 31 1 -0.0295 3.0689 1.4499 32 1 3.2690 -1.0692 0.0000 33 1 0.7603 -2.2928 1.2363 34 1 2.0685 -1.4911 2.1393 35 1 2.2898 -4.0011 2.0959 36 1 3.6845 -3.1663 1.3673 37 1 2.6493 -6.1148 -1.8804 38 1 0.9607 -5.5520 -1.8811 39 1 0.3182 -7.4801 -0.4600 40 1 2.0070 -8.0424 -0.4595 41 1 2.9953 -8.9310 -2.4021 42 1 2.6531 -10.0908 -4.5078 43 1 0.4262 -10.0232 -5.6160 44 1 -1.4056 -8.7734 -4.5611 45 1 3.6914 -3.1641 -1.3643 46 1 2.3008 -4.0010 -2.1014 47 1 0.7616 -2.2910 -1.2404 48 1 2.0710 -1.4878 -2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985460703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:41 Heat of formation + Delta-G solvation = -30.362174 kcal Electronic energy + Delta-G solvation = -28798.243071 eV Core-core repulsion = 24853.617307 eV Total energy + Delta-G solvation = -3944.625764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.35954 -41.21949 -39.05018 -37.95586 -36.74792 -36.02939 -34.01665 -32.79540 -31.62309 -31.32162 -30.67271 -28.06376 -26.99838 -25.86879 -24.63982 -24.13254 -23.77909 -22.94306 -21.17107 -19.80435 -18.86076 -18.76657 -18.26317 -17.79694 -17.30259 -17.02783 -16.93216 -16.70571 -16.34571 -15.75203 -15.46767 -15.21453 -15.11634 -15.00000 -14.91923 -14.58084 -14.33571 -14.10248 -13.67980 -13.58294 -13.23927 -13.20650 -13.09867 -12.82101 -12.79912 -12.65120 -12.61711 -12.37912 -12.30449 -12.22669 -12.09547 -11.84500 -11.64143 -11.28139 -11.14499 -10.99225 -10.85562 -10.61243 -9.70198 -8.93713 -8.78003 -7.81617 -5.30649 -0.03308 0.96727 1.46580 1.49011 1.49367 1.55568 1.56895 2.06444 2.51032 2.72575 3.31921 3.42462 3.60696 3.65836 3.69088 3.85962 3.92681 4.02221 4.09159 4.16474 4.20679 4.26636 4.32952 4.37625 4.39808 4.51069 4.54019 4.67197 4.73437 4.76973 4.78751 4.81927 4.89302 4.97168 5.07546 5.12432 5.21809 5.24697 5.34558 5.45402 5.47630 5.57251 5.65243 5.68454 5.71851 6.14333 6.33094 6.37321 7.01767 7.07045 7.14952 7.87790 8.33644 9.21942 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.002293 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.349054 B =12210.676831 C =12576.325904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.612 5.612 3 C -0.259 4.259 4 H 0.077 0.923 5 C -0.059 4.059 6 N -0.944 5.944 7 Si 0.971 3.029 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.273 1.273 11 C 0.174 3.826 12 C -0.134 4.134 13 C 0.125 3.875 14 N -0.606 5.606 15 C 0.519 3.481 16 O -0.584 6.584 17 C -0.142 4.142 18 C 0.110 3.890 19 N -0.492 5.492 20 C 0.131 3.869 21 C -0.228 4.228 22 C 0.008 3.992 23 C -0.285 4.285 24 C 0.490 3.510 25 O -0.616 6.616 26 C 0.116 3.884 27 C -0.140 4.140 28 H -0.005 1.005 29 H 0.015 0.985 30 H 0.020 0.980 31 H 0.246 0.754 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.205 0.795 42 H 0.184 0.816 43 H 0.166 0.834 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.044 0.956 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.781 -26.776 -13.646 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.334 5.334 3 C -0.390 4.390 4 H 0.095 0.905 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.199 1.199 11 C 0.067 3.933 12 C -0.175 4.175 13 C 0.001 3.999 14 N -0.338 5.338 15 C 0.308 3.692 16 O -0.465 6.465 17 C -0.182 4.182 18 C -0.012 4.012 19 N -0.201 5.201 20 C 0.005 3.995 21 C -0.250 4.250 22 C -0.014 4.014 23 C -0.307 4.307 24 C 0.295 3.705 25 O -0.504 6.504 26 C -0.006 4.006 27 C -0.180 4.180 28 H 0.013 0.987 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.159 0.841 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.221 0.779 42 H 0.202 0.798 43 H 0.183 0.817 44 H 0.157 0.843 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.063 0.937 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.034 -26.513 -12.667 31.050 hybrid contribution -0.779 1.681 0.500 1.919 sum 9.255 -24.832 -12.167 29.160 Atomic orbital electron populations 1.20377 0.83625 0.95275 0.96860 1.44201 1.01626 1.01602 1.85970 1.19586 0.98578 0.86551 1.34241 0.90483 1.25864 0.98583 1.02148 0.98755 1.70250 1.20144 1.27540 1.41122 0.85279 0.77641 0.79302 0.77840 1.20299 1.22625 1.19851 1.20537 0.95700 0.84558 0.92467 1.22305 0.99061 0.95926 1.00158 1.21499 1.00306 0.91753 0.86301 1.48244 1.65398 1.11824 1.08331 1.20759 0.75525 0.81624 0.91302 1.90683 1.53638 1.66965 1.35176 1.21914 1.05491 0.95381 0.95451 1.21618 1.03847 0.92163 0.83590 1.45574 1.11197 1.42002 1.21325 1.22827 0.93138 0.89336 0.94158 1.21213 0.99650 1.07136 0.96990 1.21890 0.91390 0.89772 0.98313 1.22094 1.03262 1.07824 0.97501 1.17723 0.81742 0.83306 0.87696 1.90960 1.43900 1.48279 1.67274 1.22042 1.01342 0.92351 0.84883 1.22401 0.99748 0.96387 0.99456 0.98664 0.96599 0.96155 0.94496 0.91260 0.94675 0.92846 0.90563 0.89316 0.84149 0.89123 0.91288 0.85599 0.77860 0.79829 0.81668 0.84308 0.88315 0.87370 0.93748 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.53 8.03 127.77 1.03 10.56 16 2 N -0.61 -30.43 2.81 -702.61 -1.97 -32.40 16 3 C -0.26 -14.03 9.59 84.03 0.81 -13.22 16 4 H 0.08 3.93 7.82 -2.91 -0.02 3.91 16 5 C -0.06 -3.32 5.12 84.86 0.43 -2.89 16 6 N -0.94 -57.19 10.64 21.65 0.23 -56.96 16 7 Si 0.97 45.08 29.57 68.60 2.03 47.11 16 8 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 9 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.17 6.64 2.55 45.02 0.11 6.75 16 12 C -0.13 -4.96 5.34 30.67 0.16 -4.79 16 13 C 0.12 3.60 6.43 86.36 0.56 4.16 16 14 N -0.61 -15.26 2.97 -818.07 -2.43 -17.69 16 15 C 0.52 13.21 7.70 87.66 0.67 13.89 16 16 O -0.58 -19.12 15.39 -3.02 -0.05 -19.17 16 17 C -0.14 -2.50 4.37 29.85 0.13 -2.37 16 18 C 0.11 2.03 4.62 86.38 0.40 2.43 16 19 N -0.49 -8.03 2.58 -650.99 -1.68 -9.71 16 20 C 0.13 0.83 10.28 83.42 0.86 1.69 16 21 C -0.23 -0.98 10.01 22.08 0.22 -0.76 16 22 C 0.01 0.07 10.10 22.32 0.23 0.29 16 23 C -0.29 -5.10 9.99 22.40 0.22 -4.88 16 24 C 0.49 12.09 7.41 84.82 0.63 12.71 16 25 O -0.62 -22.18 16.64 -5.49 -0.09 -22.27 16 26 C 0.12 2.38 6.37 86.51 0.55 2.93 16 27 C -0.14 -4.24 5.34 30.82 0.16 -4.08 16 28 H 0.00 -0.29 7.42 -2.38 -0.02 -0.30 16 29 H 0.02 0.87 7.22 -2.39 -0.02 0.85 16 30 H 0.02 0.93 6.46 -2.38 -0.02 0.91 16 31 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.07 2.55 7.86 -2.39 -0.02 2.53 16 33 H 0.03 1.44 7.72 -2.39 -0.02 1.42 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.14 1.24 7.93 -2.38 -0.02 1.22 16 38 H 0.09 1.92 7.70 -2.39 -0.02 1.90 16 39 H 0.07 1.88 7.34 -2.39 -0.02 1.86 16 40 H 0.13 1.64 7.97 -2.39 -0.02 1.62 16 41 H 0.20 -0.47 8.04 -2.91 -0.02 -0.49 16 42 H 0.18 -0.55 8.06 -2.91 -0.02 -0.57 16 43 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 44 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.11 1.62 5.93 -2.39 -0.01 1.60 16 47 H 0.04 1.51 6.72 -2.39 -0.02 1.50 16 48 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -84.24 383.36 4.16 -80.08 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.95 Total: 8.59 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 7.18 Total: 22.42 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -5.85 Total: -116.76 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.14 Total: -41.44 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -84.24 4.16 -80.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985460703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.719 kcal (2) G-P(sol) polarization free energy of solvation -84.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds