Wall clock time and date at job start Tue Mar 31 2020 17:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36937 * 120.00030 * 2 1 4 4 H 1.08008 * 119.99881 * 202.98675 * 3 2 1 5 5 C 1.38807 * 120.00306 * 22.98989 * 3 2 1 6 6 N 1.31622 * 119.99704 * 11.64002 * 5 3 2 7 7 Si 1.86792 * 120.00418 * 191.65056 * 5 3 2 8 8 H 1.48503 * 109.47122 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47616 * 119.99366 * 7 5 3 10 10 H 1.48498 * 109.47397 * 239.99880 * 7 5 3 11 11 C 1.46502 * 120.00175 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.46022 * 300.00464 * 11 2 1 13 13 C 1.53188 * 109.31417 * 181.38534 * 12 11 2 14 14 N 1.46928 * 108.77560 * 305.36438 * 13 12 11 15 15 C 1.34780 * 120.62941 * 233.59135 * 14 13 12 16 16 O 1.21278 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99838 * 180.27355 * 15 14 13 18 18 C 1.50705 * 109.47046 * 179.71779 * 17 15 14 19 19 C 1.35445 * 126.77250 * 89.99932 * 18 17 15 20 20 C 1.41386 * 103.98568 * 179.97438 * 19 18 17 21 21 C 1.50702 * 126.80145 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.50218 * 343.62531 * 21 20 19 23 23 C 1.52992 * 117.50019 * 274.99832 * 21 20 19 24 24 N 1.30177 * 106.39135 * 0.02562 * 20 19 18 25 25 O 1.20921 * 111.60392 * 359.72326 * 24 20 19 26 26 C 1.46923 * 118.73956 * 53.85640 * 14 13 12 27 27 C 1.53046 * 109.46052 * 60.06821 * 11 2 1 28 28 H 1.08995 * 109.47188 * 273.84632 * 1 2 3 29 29 H 1.09003 * 109.47440 * 33.84751 * 1 2 3 30 30 H 1.09004 * 109.47431 * 153.84285 * 1 2 3 31 31 H 0.97005 * 119.99946 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.45186 * 180.02562 * 11 2 1 33 33 H 1.08997 * 109.50132 * 61.43094 * 12 11 2 34 34 H 1.09005 * 109.52058 * 301.35163 * 12 11 2 35 35 H 1.08999 * 109.59067 * 185.57392 * 13 12 11 36 36 H 1.08999 * 109.70522 * 65.21821 * 13 12 11 37 37 H 1.09001 * 109.46999 * 299.71981 * 17 15 14 38 38 H 1.08996 * 109.47201 * 59.72133 * 17 15 14 39 39 H 1.08007 * 128.01136 * 359.97438 * 19 18 17 40 40 H 1.08997 * 115.54355 * 129.33518 * 21 20 19 41 41 H 1.08997 * 117.49715 * 359.97438 * 22 21 20 42 42 H 1.08998 * 117.49486 * 145.02227 * 22 21 20 43 43 H 1.09000 * 117.50315 * 214.97978 * 23 21 20 44 44 H 1.09004 * 117.50406 * 359.97438 * 23 21 20 45 45 H 1.09004 * 109.58368 * 65.93100 * 26 14 13 46 46 H 1.09004 * 109.58795 * 186.35438 * 26 14 13 47 47 H 1.09000 * 109.49549 * 298.57467 * 27 11 2 48 48 H 1.09005 * 109.49493 * 58.63322 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1654 1.2230 -0.3653 5 6 1.5383 2.3403 0.4695 6 7 0.3978 2.2623 1.1218 7 14 2.3341 4.0045 0.1753 8 1 3.6017 3.8211 -0.5763 9 1 1.4116 4.8623 -0.6111 10 1 2.6220 4.6530 1.4797 11 6 2.1975 -1.2687 0.0006 12 6 1.8275 -2.0705 1.2505 13 6 2.6211 -3.3807 1.2653 14 7 2.3849 -4.0910 0.0010 15 6 1.9587 -5.3696 0.0010 16 8 1.7669 -5.9449 1.0512 17 6 1.7269 -6.0865 -1.3041 18 6 1.2635 -7.4939 -1.0288 19 6 -0.0165 -7.9123 -0.8837 20 6 0.1030 -9.3007 -0.6446 21 6 -1.0214 -10.2764 -0.4101 22 6 -2.3919 -9.7011 -0.0472 23 6 -1.5537 -10.4109 1.0180 24 7 1.3766 -9.5692 -0.6673 25 8 2.0364 -8.5794 -0.8843 26 6 2.6279 -3.3829 -1.2632 27 6 1.8289 -2.0709 -1.2496 28 1 -0.3633 0.0689 1.0253 29 1 -0.3634 0.8535 -0.5724 30 1 -0.3634 -0.9224 -0.4530 31 1 -0.0292 3.0690 1.4503 32 1 3.2690 -1.0692 0.0009 33 1 0.7603 -2.2918 1.2383 34 1 2.0683 -1.4892 2.1407 35 1 2.2898 -3.9993 2.0994 36 1 3.6844 -3.1652 1.3702 37 1 0.9651 -5.5589 -1.8782 38 1 2.6560 -6.1147 -1.8732 39 1 -0.9194 -7.3222 -0.9379 40 1 -0.9995 -11.1755 -1.0258 41 1 -2.4802 -8.6170 0.0223 42 1 -3.2721 -10.2218 -0.4244 43 1 -1.8825 -11.3984 1.3417 44 1 -1.0904 -9.7940 1.7880 45 1 3.6914 -3.1652 -1.3615 46 1 2.3009 -4.0028 -2.0980 47 1 0.7616 -2.2920 -1.2384 48 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985467893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:32 Heat of formation + Delta-G solvation = 78.551898 kcal Electronic energy + Delta-G solvation = -28646.216767 eV Core-core repulsion = 24706.313872 eV Total energy + Delta-G solvation = -3939.902895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.05897 -40.15712 -37.84283 -37.63636 -35.13210 -33.93628 -33.13310 -32.22434 -30.94818 -29.87057 -28.44652 -26.04247 -24.92142 -24.81899 -23.22596 -22.88288 -22.36822 -22.09300 -20.49086 -19.61986 -18.62357 -17.90119 -17.34120 -16.94260 -16.76122 -16.18163 -15.63360 -15.56286 -15.07592 -14.82580 -14.26815 -13.99817 -13.86729 -13.72822 -13.54469 -13.30813 -13.07986 -12.55337 -12.41122 -12.25277 -12.21899 -11.89087 -11.76704 -11.72055 -11.51167 -11.31407 -11.00228 -10.90353 -10.83114 -10.71819 -10.43393 -10.26775 -10.18758 -10.02957 -9.91596 -9.88958 -9.65760 -9.41423 -8.62764 -8.53334 -6.78847 -5.75664 -3.22331 1.27583 2.01215 2.52539 2.77573 3.13613 3.34553 3.35473 3.41918 3.43600 3.83624 4.20538 4.38304 4.44918 4.48366 4.59716 4.73668 4.80232 4.91287 4.95042 5.05063 5.16937 5.26471 5.28518 5.32446 5.35702 5.45231 5.45780 5.50695 5.56002 5.70690 5.73067 5.76486 5.83601 5.85206 5.96178 6.09430 6.19341 6.30322 6.47838 6.54115 6.74311 6.92506 6.95838 7.35774 7.39578 7.70554 7.77699 8.09844 8.12665 8.36810 9.20529 9.83864 10.33023 11.29117 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.002207 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.399511 B =12681.490792 C =13171.456388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.114 3.886 14 N -0.602 5.602 15 C 0.516 3.484 16 O -0.539 6.539 17 C -0.063 4.063 18 C -0.005 4.005 19 C -0.214 4.214 20 C 0.048 3.952 21 C -0.087 4.087 22 C -0.162 4.162 23 C -0.164 4.164 24 N -0.360 5.360 25 O 0.105 5.895 26 C 0.106 3.894 27 C -0.148 4.148 28 H 0.027 0.973 29 H 0.042 0.958 30 H -0.003 1.003 31 H 0.252 0.748 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.170 0.830 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -20.617 -6.859 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.070 3.930 12 C -0.184 4.184 13 C -0.008 4.008 14 N -0.336 5.336 15 C 0.303 3.697 16 O -0.416 6.416 17 C -0.103 4.103 18 C -0.069 4.069 19 C -0.236 4.236 20 C -0.110 4.110 21 C -0.106 4.106 22 C -0.200 4.200 23 C -0.201 4.201 24 N -0.062 5.062 25 O 0.038 5.962 26 C -0.017 4.017 27 C -0.188 4.188 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.187 0.813 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.737 -21.865 -6.073 22.705 hybrid contribution -0.323 1.712 -0.166 1.750 sum -1.060 -20.153 -6.238 21.123 Atomic orbital electron populations 1.20735 0.82766 0.95399 0.99119 1.43965 1.01784 1.00184 1.85853 1.19255 0.98266 0.85478 1.35393 0.91379 1.25044 0.97803 0.98569 0.98314 1.70079 1.18510 1.27058 1.39567 0.86192 0.78602 0.84350 0.77428 1.20339 1.21677 1.21769 1.20285 0.96060 0.86080 0.90556 1.22506 0.99954 0.94358 1.01629 1.21727 0.99955 0.93745 0.85399 1.48143 1.65542 1.11422 1.08466 1.20143 0.77380 0.81795 0.90417 1.90733 1.51702 1.65936 1.33239 1.20197 1.05498 0.86821 0.97813 1.23568 0.90200 0.90828 1.02286 1.22267 0.98210 0.94356 1.08718 1.22565 0.91892 0.93676 1.02891 1.20087 0.91167 0.98733 1.00628 1.23035 0.93085 1.01246 1.02618 1.23033 1.02907 1.02710 0.91498 1.73784 1.05777 1.08139 1.18536 1.84810 1.34244 1.11808 1.65342 1.21985 1.00762 0.94336 0.84621 1.22568 1.00068 0.94661 1.01544 0.95502 0.93905 0.98494 0.93812 0.91863 0.92241 0.90570 0.89644 0.91551 0.85390 0.86284 0.81268 0.86027 0.88110 0.87788 0.87927 0.88327 0.90923 0.90330 0.91846 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 8.03 59.84 0.48 4.35 16 2 N -0.60 -13.97 2.81 -173.44 -0.49 -14.46 16 3 C -0.25 -6.65 9.59 -15.06 -0.14 -6.80 16 4 H 0.07 1.74 7.82 -52.48 -0.41 1.33 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.91 -25.85 10.64 55.49 0.59 -25.26 16 7 Si 0.90 21.27 29.57 -169.99 -5.03 16.24 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.18 3.26 2.55 -67.88 -0.17 3.08 16 12 C -0.14 -2.47 5.34 -26.61 -0.14 -2.61 16 13 C 0.11 1.64 6.43 -3.71 -0.02 1.61 16 14 N -0.60 -7.63 2.97 -172.51 -0.51 -8.14 16 15 C 0.52 6.73 7.69 -10.99 -0.08 6.64 16 16 O -0.54 -9.27 15.45 5.56 0.09 -9.19 16 17 C -0.06 -0.56 4.61 -29.03 -0.13 -0.69 16 18 C 0.00 -0.05 5.98 -35.30 -0.21 -0.27 16 19 C -0.21 -2.37 10.40 -39.38 -0.41 -2.78 16 20 C 0.05 0.58 6.95 -82.10 -0.57 0.01 16 21 C -0.09 -0.81 6.33 -91.77 -0.58 -1.39 16 22 C -0.16 -1.18 10.05 -26.73 -0.27 -1.45 16 23 C -0.16 -1.36 10.23 -26.73 -0.27 -1.63 16 24 N -0.36 -5.00 12.07 33.42 0.40 -4.60 16 25 O 0.11 1.41 11.20 17.19 0.19 1.60 16 26 C 0.11 1.11 6.37 -3.49 -0.02 1.09 16 27 C -0.15 -2.11 5.34 -26.39 -0.14 -2.25 16 28 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 29 H 0.04 1.10 7.22 -51.93 -0.37 0.72 16 30 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 33 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.32 7.01 -51.93 -0.36 0.95 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.13 0.82 7.70 -51.93 -0.40 0.42 16 38 H 0.12 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.17 1.51 7.63 -52.48 -0.40 1.11 16 40 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.75 7.35 -51.93 -0.38 0.37 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.57 5.94 -51.93 -0.31 0.26 16 47 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 48 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -32.95 385.25 -9.18 -42.13 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.45 Total: -0.99 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.79 Total: -3.14 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.01 Total: -52.46 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.28 Total: -7.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.95 -9.18 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985467893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.680 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds