Wall clock time and date at job start Tue Mar 31 2020 17:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36937 * 120.00030 * 2 1 4 4 H 1.08008 * 119.99881 * 202.98675 * 3 2 1 5 5 C 1.38807 * 120.00306 * 22.98989 * 3 2 1 6 6 N 1.31622 * 119.99704 * 11.64002 * 5 3 2 7 7 Si 1.86792 * 120.00418 * 191.65056 * 5 3 2 8 8 H 1.48503 * 109.47122 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47616 * 119.99366 * 7 5 3 10 10 H 1.48498 * 109.47397 * 239.99880 * 7 5 3 11 11 C 1.46502 * 120.00175 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.46022 * 300.00464 * 11 2 1 13 13 C 1.53188 * 109.31417 * 181.38534 * 12 11 2 14 14 N 1.46928 * 108.77560 * 305.36438 * 13 12 11 15 15 C 1.34780 * 120.62941 * 233.59135 * 14 13 12 16 16 O 1.21278 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99838 * 180.27355 * 15 14 13 18 18 C 1.50705 * 109.47046 * 179.71779 * 17 15 14 19 19 C 1.35445 * 126.77250 * 89.99932 * 18 17 15 20 20 C 1.41386 * 103.98568 * 179.97438 * 19 18 17 21 21 C 1.50702 * 126.80145 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.50218 * 343.62531 * 21 20 19 23 23 C 1.52992 * 117.50019 * 274.99832 * 21 20 19 24 24 N 1.30177 * 106.39135 * 0.02562 * 20 19 18 25 25 O 1.20921 * 111.60392 * 359.72326 * 24 20 19 26 26 C 1.46923 * 118.73956 * 53.85640 * 14 13 12 27 27 C 1.53046 * 109.46052 * 60.06821 * 11 2 1 28 28 H 1.08995 * 109.47188 * 273.84632 * 1 2 3 29 29 H 1.09003 * 109.47440 * 33.84751 * 1 2 3 30 30 H 1.09004 * 109.47431 * 153.84285 * 1 2 3 31 31 H 0.97005 * 119.99946 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.45186 * 180.02562 * 11 2 1 33 33 H 1.08997 * 109.50132 * 61.43094 * 12 11 2 34 34 H 1.09005 * 109.52058 * 301.35163 * 12 11 2 35 35 H 1.08999 * 109.59067 * 185.57392 * 13 12 11 36 36 H 1.08999 * 109.70522 * 65.21821 * 13 12 11 37 37 H 1.09001 * 109.46999 * 299.71981 * 17 15 14 38 38 H 1.08996 * 109.47201 * 59.72133 * 17 15 14 39 39 H 1.08007 * 128.01136 * 359.97438 * 19 18 17 40 40 H 1.08997 * 115.54355 * 129.33518 * 21 20 19 41 41 H 1.08997 * 117.49715 * 359.97438 * 22 21 20 42 42 H 1.08998 * 117.49486 * 145.02227 * 22 21 20 43 43 H 1.09000 * 117.50315 * 214.97978 * 23 21 20 44 44 H 1.09004 * 117.50406 * 359.97438 * 23 21 20 45 45 H 1.09004 * 109.58368 * 65.93100 * 26 14 13 46 46 H 1.09004 * 109.58795 * 186.35438 * 26 14 13 47 47 H 1.09000 * 109.49549 * 298.57467 * 27 11 2 48 48 H 1.09005 * 109.49493 * 58.63322 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1654 1.2230 -0.3653 5 6 1.5383 2.3403 0.4695 6 7 0.3978 2.2623 1.1218 7 14 2.3341 4.0045 0.1753 8 1 3.6017 3.8211 -0.5763 9 1 1.4116 4.8623 -0.6111 10 1 2.6220 4.6530 1.4797 11 6 2.1975 -1.2687 0.0006 12 6 1.8275 -2.0705 1.2505 13 6 2.6211 -3.3807 1.2653 14 7 2.3849 -4.0910 0.0010 15 6 1.9587 -5.3696 0.0010 16 8 1.7669 -5.9449 1.0512 17 6 1.7269 -6.0865 -1.3041 18 6 1.2635 -7.4939 -1.0288 19 6 -0.0165 -7.9123 -0.8837 20 6 0.1030 -9.3007 -0.6446 21 6 -1.0214 -10.2764 -0.4101 22 6 -2.3919 -9.7011 -0.0472 23 6 -1.5537 -10.4109 1.0180 24 7 1.3766 -9.5692 -0.6673 25 8 2.0364 -8.5794 -0.8843 26 6 2.6279 -3.3829 -1.2632 27 6 1.8289 -2.0709 -1.2496 28 1 -0.3633 0.0689 1.0253 29 1 -0.3634 0.8535 -0.5724 30 1 -0.3634 -0.9224 -0.4530 31 1 -0.0292 3.0690 1.4503 32 1 3.2690 -1.0692 0.0009 33 1 0.7603 -2.2918 1.2383 34 1 2.0683 -1.4892 2.1407 35 1 2.2898 -3.9993 2.0994 36 1 3.6844 -3.1652 1.3702 37 1 0.9651 -5.5589 -1.8782 38 1 2.6560 -6.1147 -1.8732 39 1 -0.9194 -7.3222 -0.9379 40 1 -0.9995 -11.1755 -1.0258 41 1 -2.4802 -8.6170 0.0223 42 1 -3.2721 -10.2218 -0.4244 43 1 -1.8825 -11.3984 1.3417 44 1 -1.0904 -9.7940 1.7880 45 1 3.6914 -3.1652 -1.3615 46 1 2.3009 -4.0028 -2.0980 47 1 0.7616 -2.2920 -1.2384 48 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985467893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:31 Heat of formation + Delta-G solvation = 59.583828 kcal Electronic energy + Delta-G solvation = -28647.039285 eV Core-core repulsion = 24706.313872 eV Total energy + Delta-G solvation = -3940.725412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.94376 -41.23247 -38.97908 -38.50816 -36.69127 -34.79592 -34.07462 -33.77915 -32.13775 -31.43774 -29.39981 -28.00824 -26.28640 -25.63950 -24.22796 -23.94884 -23.59852 -22.96101 -21.59987 -20.64755 -19.75262 -18.84385 -18.74133 -18.22490 -17.93532 -17.00267 -16.92140 -16.55569 -16.49809 -15.70144 -15.52645 -15.16340 -15.07006 -14.97653 -14.74093 -14.53127 -14.36062 -13.92826 -13.65534 -13.24546 -13.13363 -13.07891 -12.94130 -12.77317 -12.64466 -12.54648 -12.43343 -12.31652 -12.15186 -12.04988 -12.00330 -11.79579 -11.57553 -11.37757 -11.21927 -11.03838 -10.69996 -10.60735 -10.32599 -9.66279 -8.73136 -7.79245 -5.27169 0.40917 1.17297 1.47464 1.49222 1.56205 1.58865 1.91398 2.23099 2.52899 2.69389 3.11836 3.34531 3.43185 3.53102 3.67156 3.83322 3.92502 3.97788 4.06539 4.09466 4.16065 4.23515 4.27502 4.35441 4.36789 4.43841 4.58265 4.62009 4.67491 4.73976 4.77787 4.85602 4.88554 4.92515 4.95942 5.04614 5.05935 5.08520 5.15814 5.18635 5.29568 5.39623 5.55099 5.64141 5.70420 5.76359 6.36895 6.41787 7.10752 7.19207 7.25956 7.92857 8.36566 9.24026 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.002207 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.399511 B =12681.490792 C =13171.456388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.612 5.612 3 C -0.254 4.254 4 H 0.075 0.925 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.966 3.034 8 H -0.262 1.262 9 H -0.294 1.294 10 H -0.298 1.298 11 C 0.171 3.829 12 C -0.131 4.131 13 C 0.124 3.876 14 N -0.602 5.602 15 C 0.514 3.486 16 O -0.588 6.588 17 C -0.055 4.055 18 C -0.010 4.010 19 C -0.222 4.222 20 C 0.041 3.959 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.170 4.170 24 N -0.393 5.393 25 O 0.087 5.913 26 C 0.111 3.889 27 C -0.138 4.138 28 H -0.007 1.007 29 H 0.014 0.986 30 H 0.029 0.971 31 H 0.245 0.755 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.190 0.810 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.057 0.943 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -21.765 -9.368 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.384 4.384 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.795 3.205 8 H -0.187 1.187 9 H -0.221 1.221 10 H -0.225 1.225 11 C 0.064 3.936 12 C -0.172 4.172 13 C 0.001 3.999 14 N -0.334 5.334 15 C 0.303 3.697 16 O -0.469 6.469 17 C -0.094 4.094 18 C -0.074 4.074 19 C -0.243 4.243 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.182 4.182 23 C -0.208 4.208 24 N -0.099 5.099 25 O 0.023 5.977 26 C -0.011 4.011 27 C -0.177 4.177 28 H 0.011 0.989 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.207 0.793 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.144 0.856 47 H 0.076 0.924 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.140 -23.028 -8.627 24.591 hybrid contribution -0.488 2.019 0.656 2.178 sum -0.628 -21.009 -7.971 22.479 Atomic orbital electron populations 1.20396 0.83317 0.95660 0.96836 1.44224 1.01815 1.01476 1.85909 1.19634 0.98441 0.86608 1.33725 0.90687 1.25803 0.98628 1.01920 0.98990 1.70255 1.20105 1.27264 1.41364 0.85207 0.78178 0.80286 0.76814 1.18656 1.22126 1.22517 1.20577 0.95489 0.84648 0.92872 1.22282 0.99316 0.95494 1.00062 1.21457 1.00069 0.91929 0.86468 1.48193 1.65225 1.11535 1.08441 1.20834 0.75962 0.81546 0.91311 1.90726 1.53663 1.66996 1.35494 1.20389 1.08464 0.84831 0.95757 1.24080 0.90274 0.91436 1.01652 1.22625 0.99057 0.94199 1.08407 1.23105 0.91991 0.94832 1.01820 1.20268 0.91537 0.99099 1.01414 1.23146 0.92814 1.01328 1.00900 1.23075 1.03278 1.03624 0.90774 1.73767 1.06801 1.09000 1.20292 1.84758 1.34795 1.12313 1.65845 1.22177 1.01381 0.92766 0.84793 1.22386 1.00368 0.96039 0.98938 0.98890 0.96718 0.95231 0.94578 0.91927 0.93890 0.93421 0.91041 0.90065 0.81799 0.82688 0.79323 0.85047 0.88292 0.85360 0.86074 0.90371 0.89044 0.85595 0.92412 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 8.03 127.77 1.03 9.79 16 2 N -0.61 -28.65 2.81 -702.63 -1.97 -30.62 16 3 C -0.25 -13.25 9.59 84.03 0.81 -12.44 16 4 H 0.08 3.74 7.82 -2.91 -0.02 3.72 16 5 C -0.06 -3.23 5.12 84.86 0.43 -2.80 16 6 N -0.94 -55.42 10.64 21.65 0.23 -55.19 16 7 Si 0.97 44.13 29.57 68.60 2.03 46.16 16 8 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 11 C 0.17 6.01 2.55 45.02 0.11 6.12 16 12 C -0.13 -4.50 5.34 30.67 0.16 -4.34 16 13 C 0.12 3.43 6.43 86.36 0.56 3.98 16 14 N -0.60 -13.39 2.97 -818.08 -2.43 -15.81 16 15 C 0.51 12.01 7.69 87.66 0.67 12.68 16 16 O -0.59 -19.78 15.45 -3.02 -0.05 -19.83 16 17 C -0.05 -0.74 4.61 29.10 0.13 -0.61 16 18 C -0.01 -0.22 5.98 25.04 0.15 -0.07 16 19 C -0.22 -4.54 10.40 22.40 0.23 -4.30 16 20 C 0.04 0.94 6.95 43.58 0.30 1.25 16 21 C -0.10 -1.81 6.33 -11.54 -0.07 -1.88 16 22 C -0.14 -1.82 10.05 30.60 0.31 -1.51 16 23 C -0.17 -2.66 10.23 30.59 0.31 -2.35 16 24 N -0.39 -10.87 12.07 -49.55 -0.60 -11.47 16 25 O 0.09 2.27 11.20 71.70 0.80 3.07 16 26 C 0.11 1.78 6.37 86.51 0.55 2.33 16 27 C -0.14 -3.46 5.34 30.82 0.16 -3.30 16 28 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 29 H 0.01 0.75 7.22 -2.39 -0.02 0.73 16 30 H 0.03 1.19 6.46 -2.38 -0.02 1.17 16 31 H 0.24 14.09 8.31 -92.70 -0.77 13.32 16 32 H 0.06 2.20 7.86 -2.39 -0.02 2.18 16 33 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 34 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 35 H 0.07 2.21 7.01 -2.39 -0.02 2.19 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.16 1.10 7.70 -2.39 -0.02 1.08 16 38 H 0.16 1.05 7.93 -2.39 -0.02 1.03 16 39 H 0.19 2.90 7.63 -2.91 -0.02 2.88 16 40 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.10 1.28 7.35 -2.39 -0.02 1.27 16 42 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.13 0.94 5.94 -2.39 -0.01 0.92 16 47 H 0.06 1.54 6.72 -2.39 -0.02 1.52 16 48 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -76.29 385.25 4.83 -71.46 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.96 Total: 9.67 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 5.86 Total: 2.56 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.77 Total: -113.10 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.76 Total: -16.76 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -76.29 4.83 -71.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985467893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.041 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds