Wall clock time and date at job start Tue Mar 31 2020 17:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99790 * 2 1 4 4 H 1.07999 * 119.99900 * 202.99397 * 3 2 1 5 5 C 1.38812 * 119.99850 * 22.99625 * 3 2 1 6 6 N 1.31616 * 120.00479 * 11.63327 * 5 3 2 7 7 Si 1.86802 * 119.99563 * 191.63694 * 5 3 2 8 8 H 1.48497 * 109.47499 * 60.00132 * 7 5 3 9 9 H 1.48501 * 109.46891 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47146 * 299.99387 * 7 5 3 11 11 C 1.46507 * 119.99940 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.45850 * 299.99639 * 11 2 1 13 13 C 1.53187 * 109.31185 * 181.38457 * 12 11 2 14 14 N 1.46923 * 108.78026 * 305.37152 * 13 12 11 15 15 C 1.34777 * 120.63480 * 233.58566 * 14 13 12 16 16 O 1.21284 * 119.99599 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00501 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.46930 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.46586 * 180.02562 * 18 17 15 20 20 C 1.38823 * 120.35577 * 90.00190 * 19 18 17 21 21 C 1.38375 * 118.48685 * 179.69738 * 20 19 18 22 22 C 1.38923 * 119.11203 * 0.27203 * 21 20 19 23 23 O 1.35666 * 119.68598 * 179.97438 * 22 21 20 24 24 N 1.32250 * 120.62640 * 0.02562 * 22 21 20 25 25 C 1.31966 * 121.65318 * 359.97438 * 24 22 21 26 26 C 1.46926 * 118.73929 * 53.85420 * 14 13 12 27 27 C 1.53035 * 109.45950 * 60.06946 * 11 2 1 28 28 H 1.08995 * 109.47050 * 273.84350 * 1 2 3 29 29 H 1.08999 * 109.47227 * 33.85081 * 1 2 3 30 30 H 1.09005 * 109.47091 * 153.84430 * 1 2 3 31 31 H 0.96990 * 120.00080 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.44482 * 180.02562 * 11 2 1 33 33 H 1.09001 * 109.49510 * 61.44163 * 12 11 2 34 34 H 1.08993 * 109.52569 * 301.35966 * 12 11 2 35 35 H 1.08997 * 109.59041 * 185.57889 * 13 12 11 36 36 H 1.09008 * 109.70263 * 65.22536 * 13 12 11 37 37 H 1.09006 * 109.46868 * 60.00120 * 17 15 14 38 38 H 1.09000 * 109.47149 * 299.99796 * 17 15 14 39 39 H 1.09000 * 109.47395 * 60.00776 * 18 17 15 40 40 H 1.08991 * 109.47424 * 300.00069 * 18 17 15 41 41 H 1.08002 * 120.75403 * 359.97438 * 20 19 18 42 42 H 1.08002 * 120.44767 * 180.30266 * 21 20 19 43 43 H 0.96701 * 114.00337 * 90.00394 * 23 22 21 44 44 H 1.07994 * 119.58622 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.58970 * 65.93061 * 26 14 13 46 46 H 1.09003 * 109.58960 * 186.35880 * 26 14 13 47 47 H 1.09001 * 109.49629 * 298.56277 * 27 11 2 48 48 H 1.09001 * 109.50124 * 58.66442 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1653 1.2231 -0.3654 5 6 1.5382 2.3403 0.4697 6 7 0.3978 2.2623 1.1220 7 14 2.3342 4.0044 0.1757 8 1 2.4681 4.2382 -1.2846 9 1 1.4884 5.0698 0.7714 10 1 3.6784 4.0285 0.8063 11 6 2.1975 -1.2688 -0.0006 12 6 1.8277 -2.0716 1.2488 13 6 2.6212 -3.3818 1.2624 14 7 2.3850 -4.0910 -0.0025 15 6 1.9589 -5.3696 -0.0037 16 8 1.7671 -5.9459 1.0461 17 6 1.7206 -6.0833 -1.3094 18 6 1.2456 -7.5108 -1.0311 19 6 1.0079 -8.2246 -2.3369 20 6 2.0339 -8.9352 -2.9449 21 6 1.7712 -9.5813 -4.1400 22 6 0.4989 -9.4929 -4.6908 23 8 0.2287 -10.1213 -5.8623 24 7 -0.4512 -8.8010 -4.0843 25 6 -0.2309 -8.1743 -2.9440 26 6 2.6280 -3.3818 -1.2661 27 6 1.8289 -2.0697 -1.2514 28 1 -0.3633 0.0689 1.0253 29 1 -0.3633 0.8535 -0.5724 30 1 -0.3633 -0.9225 -0.4530 31 1 -0.0292 3.0688 1.4504 32 1 3.2691 -1.0691 0.0000 33 1 0.7604 -2.2928 1.2363 34 1 2.0684 -1.4911 2.1393 35 1 2.2899 -4.0011 2.0959 36 1 3.6846 -3.1663 1.3674 37 1 2.6482 -6.1144 -1.8811 38 1 0.9595 -5.5516 -1.8805 39 1 0.3180 -7.4801 -0.4594 40 1 2.0069 -8.0423 -0.4602 41 1 3.0135 -8.9863 -2.4931 42 1 2.5448 -10.1472 -4.6378 43 1 -0.0924 -11.0275 -5.7577 44 1 -1.0312 -7.6193 -2.4774 45 1 3.6914 -3.1640 -1.3643 46 1 2.3010 -4.0010 -2.1014 47 1 0.7617 -2.2910 -1.2403 48 1 2.0711 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985603449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:38 Heat of formation + Delta-G solvation = -21.151902 kcal Electronic energy + Delta-G solvation = -28251.182185 eV Core-core repulsion = 24306.955809 eV Total energy + Delta-G solvation = -3944.226376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89463 -40.06365 -37.82117 -37.43691 -35.08203 -34.43633 -32.56340 -32.17506 -30.98622 -29.90497 -29.27286 -26.01968 -25.61369 -24.41902 -24.10033 -22.87305 -22.29124 -21.59889 -19.72187 -19.20833 -18.47891 -17.32296 -17.25396 -16.75967 -16.35974 -15.83697 -15.60878 -15.32956 -15.02003 -14.62393 -14.00999 -13.95759 -13.82319 -13.65991 -13.57901 -13.43368 -13.18289 -12.86599 -12.53729 -12.35139 -12.20661 -12.07668 -11.94821 -11.70670 -11.45631 -11.34038 -10.95399 -10.86909 -10.78335 -10.40631 -10.27558 -10.25936 -10.14941 -9.86800 -9.81270 -9.72239 -9.58231 -9.11249 -8.57832 -8.46951 -6.75925 -5.72872 -3.19476 0.57977 0.83260 2.66355 3.03492 3.13199 3.37310 3.43023 3.43512 3.44497 4.21260 4.32534 4.46943 4.52649 4.56487 4.66450 4.81734 4.86509 5.00726 5.08916 5.21634 5.24872 5.32891 5.36689 5.40987 5.48734 5.53897 5.57774 5.61475 5.76707 5.81964 5.87909 5.94034 6.01284 6.14028 6.14800 6.23719 6.35770 6.51871 6.60253 6.78567 6.96419 6.99667 7.07897 7.39044 7.51151 7.54558 7.72927 7.79752 8.22138 8.39639 9.23256 9.86659 10.36151 11.31895 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002102 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.192655 B =13317.904095 C =13935.962381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.605 5.605 15 C 0.513 3.487 16 O -0.551 6.551 17 C -0.135 4.135 18 C -0.059 4.059 19 C -0.140 4.140 20 C -0.057 4.057 21 C -0.183 4.183 22 C 0.301 3.699 23 O -0.484 6.484 24 N -0.501 5.501 25 C 0.129 3.871 26 C 0.108 3.892 27 C -0.148 4.148 28 H 0.027 0.973 29 H 0.042 0.958 30 H -0.003 1.003 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.399 0.601 44 H 0.162 0.838 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -24.049 -8.587 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.338 5.338 15 C 0.302 3.698 16 O -0.429 6.429 17 C -0.175 4.175 18 C -0.098 4.098 19 C -0.142 4.142 20 C -0.083 4.083 21 C -0.204 4.204 22 C 0.123 3.877 23 O -0.291 6.291 24 N -0.219 5.219 25 C -0.028 4.028 26 C -0.015 4.015 27 C -0.188 4.188 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.257 0.743 44 H 0.179 0.821 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.751 -23.638 -8.653 25.321 hybrid contribution 0.976 0.642 0.271 1.199 sum 3.727 -22.996 -8.382 24.758 Atomic orbital electron populations 1.20735 0.82756 0.95410 0.99101 1.43947 1.01782 1.00162 1.85886 1.19165 0.98249 0.85549 1.35542 0.91527 1.25039 0.97808 0.98534 0.98307 1.70051 1.18481 1.27278 1.39434 0.86336 0.78487 0.83853 0.77834 1.21126 1.21678 1.20972 1.20278 0.95970 0.86075 0.90608 1.22493 0.99978 0.94427 1.01530 1.21695 0.99743 0.93822 0.85686 1.48202 1.65661 1.11839 1.08136 1.20537 0.76596 0.81558 0.91156 1.90678 1.52443 1.66065 1.33730 1.21690 1.03693 0.95872 0.96278 1.20263 1.03849 0.93213 0.92452 1.20983 0.94759 0.99803 0.98700 1.21473 0.99348 0.93747 0.93700 1.22116 0.98070 1.03362 0.96881 1.19218 0.89025 0.93633 0.85862 1.84793 1.87462 1.31817 1.25004 1.67194 1.35946 1.09261 1.09516 1.22519 0.95978 0.94906 0.89429 1.21925 1.00374 0.94261 0.84929 1.22560 1.00105 0.94712 1.01426 0.95488 0.93928 0.98490 0.93708 0.91969 0.92252 0.90659 0.89674 0.91829 0.88893 0.88577 0.89524 0.89784 0.84177 0.84198 0.74340 0.82084 0.91321 0.90382 0.91879 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.03 59.85 0.48 4.47 16 2 N -0.60 -14.35 2.81 -173.44 -0.49 -14.84 16 3 C -0.26 -6.82 9.59 -15.06 -0.14 -6.96 16 4 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.91 -26.21 10.64 55.49 0.59 -25.62 16 7 Si 0.90 21.57 29.57 -169.99 -5.03 16.54 16 8 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.18 3.40 2.55 -67.89 -0.17 3.23 16 12 C -0.14 -2.55 5.34 -26.61 -0.14 -2.69 16 13 C 0.11 1.67 6.43 -3.71 -0.02 1.65 16 14 N -0.61 -8.04 2.97 -172.50 -0.51 -8.55 16 15 C 0.51 6.64 7.70 -10.99 -0.08 6.56 16 16 O -0.55 -8.91 15.40 5.55 0.09 -8.83 16 17 C -0.14 -1.20 4.03 -27.88 -0.11 -1.31 16 18 C -0.06 -0.49 4.65 -27.88 -0.13 -0.62 16 19 C -0.14 -1.10 5.15 -104.47 -0.54 -1.64 16 20 C -0.06 -0.39 9.85 -39.31 -0.39 -0.78 16 21 C -0.18 -1.33 10.04 -39.28 -0.39 -1.72 16 22 C 0.30 2.80 7.74 -17.12 -0.13 2.67 16 23 O -0.48 -3.91 13.56 -18.70 -0.25 -4.16 16 24 N -0.50 -5.38 10.39 -13.33 -0.14 -5.52 16 25 C 0.13 1.15 10.85 -17.56 -0.19 0.96 16 26 C 0.11 1.27 6.37 -3.48 -0.02 1.25 16 27 C -0.15 -2.27 5.34 -26.39 -0.14 -2.41 16 28 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 30 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.19 7.86 -51.93 -0.41 0.78 16 33 H 0.06 1.13 7.72 -51.93 -0.40 0.72 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.32 7.01 -51.93 -0.36 0.95 16 36 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 37 H 0.09 0.67 7.93 -51.93 -0.41 0.26 16 38 H 0.10 0.79 7.70 -51.93 -0.40 0.39 16 39 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.40 1.16 9.06 45.56 0.41 1.58 16 44 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 47 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -33.95 385.45 -8.82 -42.77 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.67 Total: -0.18 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.22 Total: 2.58 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.55 Total: -54.54 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.17 Total: -12.99 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.95 -8.82 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985603449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.619 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds