Wall clock time and date at job start Tue Mar 31 2020 17:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99790 * 2 1 4 4 H 1.07999 * 119.99900 * 202.99397 * 3 2 1 5 5 C 1.38812 * 119.99850 * 22.99625 * 3 2 1 6 6 N 1.31616 * 120.00479 * 11.63327 * 5 3 2 7 7 Si 1.86802 * 119.99563 * 191.63694 * 5 3 2 8 8 H 1.48497 * 109.47499 * 60.00132 * 7 5 3 9 9 H 1.48501 * 109.46891 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47146 * 299.99387 * 7 5 3 11 11 C 1.46507 * 119.99940 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.45850 * 299.99639 * 11 2 1 13 13 C 1.53187 * 109.31185 * 181.38457 * 12 11 2 14 14 N 1.46923 * 108.78026 * 305.37152 * 13 12 11 15 15 C 1.34777 * 120.63480 * 233.58566 * 14 13 12 16 16 O 1.21284 * 119.99599 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00501 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.46930 * 179.97438 * 17 15 14 19 19 C 1.50709 * 109.46586 * 180.02562 * 18 17 15 20 20 C 1.38823 * 120.35577 * 90.00190 * 19 18 17 21 21 C 1.38375 * 118.48685 * 179.69738 * 20 19 18 22 22 C 1.38923 * 119.11203 * 0.27203 * 21 20 19 23 23 O 1.35666 * 119.68598 * 179.97438 * 22 21 20 24 24 N 1.32250 * 120.62640 * 0.02562 * 22 21 20 25 25 C 1.31966 * 121.65318 * 359.97438 * 24 22 21 26 26 C 1.46926 * 118.73929 * 53.85420 * 14 13 12 27 27 C 1.53035 * 109.45950 * 60.06946 * 11 2 1 28 28 H 1.08995 * 109.47050 * 273.84350 * 1 2 3 29 29 H 1.08999 * 109.47227 * 33.85081 * 1 2 3 30 30 H 1.09005 * 109.47091 * 153.84430 * 1 2 3 31 31 H 0.96990 * 120.00080 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.44482 * 180.02562 * 11 2 1 33 33 H 1.09001 * 109.49510 * 61.44163 * 12 11 2 34 34 H 1.08993 * 109.52569 * 301.35966 * 12 11 2 35 35 H 1.08997 * 109.59041 * 185.57889 * 13 12 11 36 36 H 1.09008 * 109.70263 * 65.22536 * 13 12 11 37 37 H 1.09006 * 109.46868 * 60.00120 * 17 15 14 38 38 H 1.09000 * 109.47149 * 299.99796 * 17 15 14 39 39 H 1.09000 * 109.47395 * 60.00776 * 18 17 15 40 40 H 1.08991 * 109.47424 * 300.00069 * 18 17 15 41 41 H 1.08002 * 120.75403 * 359.97438 * 20 19 18 42 42 H 1.08002 * 120.44767 * 180.30266 * 21 20 19 43 43 H 0.96701 * 114.00337 * 90.00394 * 23 22 21 44 44 H 1.07994 * 119.58622 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.58970 * 65.93061 * 26 14 13 46 46 H 1.09003 * 109.58960 * 186.35880 * 26 14 13 47 47 H 1.09001 * 109.49629 * 298.56277 * 27 11 2 48 48 H 1.09001 * 109.50124 * 58.66442 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1653 1.2231 -0.3654 5 6 1.5382 2.3403 0.4697 6 7 0.3978 2.2623 1.1220 7 14 2.3342 4.0044 0.1757 8 1 2.4681 4.2382 -1.2846 9 1 1.4884 5.0698 0.7714 10 1 3.6784 4.0285 0.8063 11 6 2.1975 -1.2688 -0.0006 12 6 1.8277 -2.0716 1.2488 13 6 2.6212 -3.3818 1.2624 14 7 2.3850 -4.0910 -0.0025 15 6 1.9589 -5.3696 -0.0037 16 8 1.7671 -5.9459 1.0461 17 6 1.7206 -6.0833 -1.3094 18 6 1.2456 -7.5108 -1.0311 19 6 1.0079 -8.2246 -2.3369 20 6 2.0339 -8.9352 -2.9449 21 6 1.7712 -9.5813 -4.1400 22 6 0.4989 -9.4929 -4.6908 23 8 0.2287 -10.1213 -5.8623 24 7 -0.4512 -8.8010 -4.0843 25 6 -0.2309 -8.1743 -2.9440 26 6 2.6280 -3.3818 -1.2661 27 6 1.8289 -2.0697 -1.2514 28 1 -0.3633 0.0689 1.0253 29 1 -0.3633 0.8535 -0.5724 30 1 -0.3633 -0.9225 -0.4530 31 1 -0.0292 3.0688 1.4504 32 1 3.2691 -1.0691 0.0000 33 1 0.7604 -2.2928 1.2363 34 1 2.0684 -1.4911 2.1393 35 1 2.2899 -4.0011 2.0959 36 1 3.6846 -3.1663 1.3674 37 1 2.6482 -6.1144 -1.8811 38 1 0.9595 -5.5516 -1.8805 39 1 0.3180 -7.4801 -0.4594 40 1 2.0069 -8.0423 -0.4602 41 1 3.0135 -8.9863 -2.4931 42 1 2.5448 -10.1472 -4.6378 43 1 -0.0924 -11.0275 -5.7577 44 1 -1.0312 -7.6193 -2.4774 45 1 3.6914 -3.1640 -1.3643 46 1 2.3010 -4.0010 -2.1014 47 1 0.7617 -2.2910 -1.2403 48 1 2.0711 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985603449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:37 Heat of formation + Delta-G solvation = -45.432261 kcal Electronic energy + Delta-G solvation = -28252.235061 eV Core-core repulsion = 24306.955809 eV Total energy + Delta-G solvation = -3945.279252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53661 -41.08723 -39.01236 -38.18923 -36.67462 -35.14382 -33.92626 -33.09986 -32.16212 -31.44358 -30.15088 -28.02991 -26.71384 -25.56968 -24.66849 -24.05882 -23.65693 -22.50748 -21.02439 -19.76161 -19.66085 -18.75066 -18.24002 -17.92733 -17.03188 -16.95331 -16.76898 -16.53728 -15.96555 -15.72070 -15.26011 -15.15158 -14.99288 -14.89714 -14.56846 -14.29735 -14.19181 -14.08519 -13.86691 -13.55409 -13.19101 -13.12758 -12.89581 -12.83924 -12.74252 -12.60407 -12.53522 -12.33172 -12.22445 -12.07682 -11.96438 -11.81166 -11.58739 -11.22205 -10.86460 -10.74463 -10.58871 -10.36972 -9.71267 -9.61404 -8.74987 -7.80250 -5.28568 0.00746 0.28379 1.47397 1.49538 1.55847 1.67678 2.06998 2.52034 2.57454 2.86326 3.33119 3.46587 3.64302 3.77191 3.89414 3.94296 3.98388 4.05469 4.15567 4.18004 4.23609 4.29289 4.38388 4.42237 4.51516 4.58892 4.65236 4.75185 4.79227 4.85256 4.86598 4.93196 4.96583 5.02540 5.05482 5.13294 5.20477 5.26521 5.36531 5.40132 5.52549 5.61955 5.63711 5.68651 5.73436 6.35454 6.50013 6.65190 6.97430 7.17439 7.21479 7.90755 8.35322 9.22929 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002102 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.192655 B =13317.904095 C =13935.962381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.612 5.612 3 C -0.258 4.258 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.969 3.031 8 H -0.277 1.277 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.172 3.828 12 C -0.132 4.132 13 C 0.124 3.876 14 N -0.609 5.609 15 C 0.511 3.489 16 O -0.587 6.587 17 C -0.128 4.128 18 C -0.051 4.051 19 C -0.138 4.138 20 C -0.052 4.052 21 C -0.180 4.180 22 C 0.285 3.715 23 O -0.497 6.497 24 N -0.537 5.537 25 C 0.115 3.885 26 C 0.116 3.884 27 C -0.138 4.138 28 H -0.005 1.005 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.246 0.754 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.418 0.582 44 H 0.167 0.833 45 H 0.088 0.912 46 H 0.115 0.885 47 H 0.052 0.948 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.865 -25.737 -10.441 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.388 4.388 4 H 0.092 0.908 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.797 3.203 8 H -0.204 1.204 9 H -0.226 1.226 10 H -0.201 1.201 11 C 0.065 3.935 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.341 5.341 15 C 0.301 3.699 16 O -0.468 6.468 17 C -0.167 4.167 18 C -0.090 4.090 19 C -0.140 4.140 20 C -0.078 4.078 21 C -0.201 4.201 22 C 0.107 3.893 23 O -0.307 6.307 24 N -0.256 5.256 25 C -0.041 4.041 26 C -0.007 4.007 27 C -0.177 4.177 28 H 0.013 0.987 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.185 0.815 42 H 0.181 0.819 43 H 0.278 0.722 44 H 0.185 0.815 45 H 0.106 0.894 46 H 0.133 0.867 47 H 0.071 0.929 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.040 -25.376 -10.539 27.936 hybrid contribution 0.272 1.070 0.845 1.390 sum 5.313 -24.306 -9.694 26.702 Atomic orbital electron populations 1.20390 0.83379 0.95490 0.96892 1.44205 1.01772 1.01484 1.85983 1.19559 0.98496 0.86659 1.34133 0.90770 1.25826 0.98615 1.01992 0.98852 1.70236 1.20066 1.27491 1.41126 0.85317 0.77618 0.79532 0.77822 1.20353 1.22562 1.20051 1.20549 0.95448 0.84656 0.92798 1.22277 0.99304 0.95733 0.99897 1.21444 0.99897 0.91931 0.86713 1.48284 1.65741 1.12175 1.07937 1.21255 0.75252 0.81193 0.92161 1.90670 1.53772 1.66828 1.35534 1.21728 1.05401 0.95543 0.94041 1.20146 1.03306 0.93050 0.92481 1.20891 0.94675 1.00087 0.98313 1.21794 1.00118 0.92556 0.93297 1.22342 0.97660 1.03135 0.96920 1.19524 0.89733 0.93896 0.86140 1.84738 1.87684 1.33323 1.24997 1.67159 1.37271 1.10539 1.10590 1.22695 0.96876 0.95198 0.89319 1.22018 1.00915 0.92536 0.85189 1.22381 1.00141 0.96184 0.99043 0.98675 0.96717 0.95604 0.94498 0.91909 0.94070 0.93232 0.90603 0.90219 0.86091 0.87416 0.90701 0.89716 0.81546 0.81931 0.72185 0.81543 0.89375 0.86734 0.92880 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 8.03 127.77 1.03 10.16 16 2 N -0.61 -29.70 2.81 -702.63 -1.97 -31.68 16 3 C -0.26 -13.82 9.59 84.03 0.81 -13.01 16 4 H 0.07 3.78 7.82 -2.91 -0.02 3.76 16 5 C -0.06 -3.25 5.12 84.86 0.43 -2.81 16 6 N -0.94 -56.20 10.64 21.65 0.23 -55.97 16 7 Si 0.97 44.76 29.57 68.60 2.03 46.78 16 8 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 C 0.17 6.39 2.55 45.02 0.11 6.50 16 12 C -0.13 -4.69 5.34 30.67 0.16 -4.53 16 13 C 0.12 3.49 6.43 86.36 0.56 4.05 16 14 N -0.61 -14.50 2.97 -818.06 -2.43 -16.93 16 15 C 0.51 11.90 7.70 87.66 0.67 12.58 16 16 O -0.59 -18.23 15.40 -3.04 -0.05 -18.28 16 17 C -0.13 -1.79 4.03 29.85 0.12 -1.67 16 18 C -0.05 -0.72 4.65 29.85 0.14 -0.58 16 19 C -0.14 -1.81 5.15 -19.77 -0.10 -1.92 16 20 C -0.05 -0.54 9.85 22.44 0.22 -0.32 16 21 C -0.18 -2.10 10.04 22.47 0.23 -1.87 16 22 C 0.29 4.86 7.74 84.79 0.66 5.52 16 23 O -0.50 -7.40 13.56 -89.83 -1.22 -8.62 16 24 N -0.54 -11.03 10.39 -308.96 -3.21 -14.24 16 25 C 0.12 1.92 10.85 84.63 0.92 2.84 16 26 C 0.12 2.24 6.37 86.51 0.55 2.79 16 27 C -0.14 -3.90 5.34 30.82 0.16 -3.74 16 28 H -0.01 -0.28 7.42 -2.39 -0.02 -0.30 16 29 H 0.01 0.77 7.22 -2.39 -0.02 0.76 16 30 H 0.03 1.10 6.46 -2.38 -0.02 1.09 16 31 H 0.25 14.37 8.31 -92.72 -0.77 13.60 16 32 H 0.06 2.32 7.86 -2.39 -0.02 2.30 16 33 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.32 7.01 -2.39 -0.02 2.30 16 36 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.12 1.09 7.93 -2.38 -0.02 1.07 16 38 H 0.11 1.34 7.70 -2.39 -0.02 1.32 16 39 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 40 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 41 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 42 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 43 H 0.42 1.96 9.06 -74.06 -0.67 1.29 16 44 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.11 1.47 5.93 -2.39 -0.01 1.46 16 47 H 0.05 1.62 6.72 -2.39 -0.02 1.60 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -75.94 385.45 0.35 -75.59 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.30 Total: 9.35 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.67 Total: 13.99 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -7.38 Total: -118.82 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.26 Total: -26.89 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.94 0.35 -75.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985603449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.158 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds