Wall clock time and date at job start Tue Mar 31 2020 17:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35668 * 117.00228 * 2 1 4 4 C 1.38919 * 119.68499 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.11178 * 179.75169 * 4 3 2 6 6 C 1.38823 * 118.48612 * 0.53401 * 5 4 3 7 7 C 1.50694 * 120.35707 * 179.73598 * 6 5 4 8 8 C 1.52996 * 109.47338 * 269.72321 * 7 6 5 9 9 C 1.50698 * 109.47586 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00285 * 179.97438 * 9 8 7 12 12 C 1.46919 * 120.63242 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77845 * 233.58225 * 12 11 9 14 14 C 1.53039 * 109.31257 * 305.36660 * 13 12 11 15 15 C 1.53046 * 109.52798 * 61.36716 * 14 13 12 16 16 H 1.08998 * 109.49692 * 58.57850 * 15 14 13 17 17 N 1.46493 * 109.49651 * 178.67721 * 15 14 13 18 18 C 1.36937 * 120.00289 * 204.99988 * 17 15 14 19 19 H 1.08002 * 119.99791 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00357 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99772 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47457 * 89.99861 * 22 20 18 24 24 H 1.48510 * 109.46786 * 209.99701 * 22 20 18 25 25 H 1.48497 * 109.47261 * 329.99425 * 22 20 18 26 26 C 1.46931 * 120.63145 * 179.97438 * 11 9 8 27 27 C 1.38049 * 119.28940 * 359.46714 * 6 5 4 28 28 N 1.31968 * 120.83568 * 0.26967 * 27 6 5 29 29 H 1.08998 * 109.47602 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47056 * 299.99758 * 1 2 3 31 31 H 1.08998 * 109.47130 * 59.99275 * 1 2 3 32 32 H 1.08003 * 120.44745 * 0.04572 * 4 3 2 33 33 H 1.08000 * 120.75325 * 180.29676 * 5 4 3 34 34 H 1.09001 * 109.46992 * 149.72659 * 7 6 5 35 35 H 1.09000 * 109.47120 * 29.73073 * 7 6 5 36 36 H 1.09001 * 109.46802 * 60.00222 * 8 7 6 37 37 H 1.09000 * 109.47629 * 300.00441 * 8 7 6 38 38 H 1.08997 * 109.59005 * 113.79701 * 12 11 9 39 39 H 1.09002 * 109.70256 * 353.43937 * 12 11 9 40 40 H 1.08997 * 109.50026 * 185.40903 * 13 12 11 41 41 H 1.09000 * 109.49142 * 65.31548 * 13 12 11 42 42 H 1.09002 * 109.46050 * 181.38302 * 14 13 12 43 43 H 1.09004 * 109.46034 * 301.35518 * 14 13 12 44 44 H 0.97001 * 120.00113 * 24.99839 * 17 15 14 45 45 H 0.97000 * 119.99878 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58959 * 246.20295 * 26 11 9 47 47 H 1.09003 * 109.58181 * 6.48778 * 26 11 9 48 48 H 1.07994 * 119.58438 * 180.29881 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 0.0005 5 6 4.0486 2.5130 -0.0047 6 6 3.2507 3.6490 0.0010 7 6 3.8770 5.0196 0.0017 8 6 4.0884 5.4831 1.4443 9 6 4.7154 6.8535 1.4450 10 8 4.9678 7.4054 0.3949 11 7 4.9946 7.4663 2.6124 12 6 4.6941 6.8109 3.8925 13 6 3.8433 7.7585 4.7440 14 6 4.5639 9.1018 4.8796 15 6 4.7445 9.7275 3.4946 16 1 3.7696 9.8611 3.0258 17 7 5.4060 11.0277 3.6280 18 6 5.2312 11.9868 2.6664 19 1 4.6052 11.7848 1.8097 20 6 5.8575 13.2191 2.7930 21 7 5.6898 14.1407 1.8685 22 14 6.9396 13.5688 4.2750 23 1 8.3373 13.1682 3.9730 24 1 6.8971 15.0200 4.5874 25 1 6.4445 12.7964 5.4427 26 6 5.6063 8.8021 2.6292 27 6 1.8772 3.5097 0.0005 28 7 1.3186 2.3140 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 4.0229 0.3694 0.0002 33 1 5.1255 2.5944 -0.0092 34 1 3.2188 5.7201 -0.5122 35 1 4.8377 4.9803 -0.5119 36 1 4.7467 4.7826 1.9582 37 1 3.1278 5.5224 1.9579 38 1 5.6239 6.5857 4.4149 39 1 4.1434 5.8876 3.7123 40 1 3.6940 7.3243 5.7325 41 1 2.8770 7.9108 4.2633 42 1 3.9721 9.7698 5.5054 43 1 5.5406 8.9454 5.3376 44 1 5.9679 11.2094 4.3975 45 1 6.1272 15.0020 1.9572 46 1 6.6104 8.7390 3.0487 47 1 5.6588 9.1927 1.6129 48 1 1.2520 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999669695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:37 Heat of formation + Delta-G solvation = -28.711645 kcal Electronic energy + Delta-G solvation = -27955.069771 eV Core-core repulsion = 24010.515579 eV Total energy + Delta-G solvation = -3944.554191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99646 -40.01643 -38.41844 -37.45142 -34.65684 -34.36471 -32.55215 -32.32037 -31.35392 -30.17755 -28.72722 -27.62238 -25.74563 -24.37670 -23.82337 -23.56293 -21.83925 -21.72073 -20.25235 -18.75433 -18.73187 -17.57755 -17.46248 -17.17586 -16.33803 -15.71004 -15.63347 -15.26899 -14.84707 -14.76138 -14.62151 -14.29759 -14.17522 -13.93882 -13.60559 -13.50883 -13.34405 -13.11594 -12.63210 -12.61169 -12.44376 -12.39431 -12.28401 -11.86312 -11.63583 -11.41207 -11.28749 -11.19351 -10.94730 -10.75375 -10.65987 -10.30000 -10.20083 -9.93778 -9.91567 -9.64154 -9.56987 -9.11994 -8.68674 -8.39879 -7.30658 -5.78105 -3.15597 0.80827 0.92604 2.75420 2.79435 3.14427 3.35445 3.37913 3.43346 3.44769 3.98773 4.34343 4.56774 4.60023 4.63232 4.69474 4.74691 4.85916 4.93561 4.95799 4.96006 5.00459 5.02106 5.15081 5.25810 5.31177 5.32914 5.38300 5.43050 5.53620 5.58372 5.66717 5.68844 5.78554 5.88294 5.91944 6.00672 6.05422 6.06712 6.13550 6.21540 6.37191 6.64523 6.71821 6.87989 6.89274 7.51326 7.62352 7.97676 8.36524 8.41178 9.17640 9.89301 10.07721 11.39872 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.002002 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.264965 B =13981.783850 C =14347.060779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.311 3.689 4 C -0.188 4.188 5 C -0.037 4.037 6 C -0.167 4.167 7 C -0.057 4.057 8 C -0.133 4.133 9 C 0.508 3.492 10 O -0.539 6.539 11 N -0.609 5.609 12 C 0.107 3.893 13 C -0.130 4.130 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.059 0.941 17 N -0.743 5.743 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.007 3.993 21 N -0.930 5.930 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.092 3.908 27 C 0.143 3.857 28 N -0.538 5.538 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -29.407 2.061 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.063 4.063 6 C -0.169 4.169 7 C -0.095 4.095 8 C -0.173 4.173 9 C 0.296 3.704 10 O -0.416 6.416 11 N -0.343 5.343 12 C -0.017 4.017 13 C -0.169 4.169 14 C -0.168 4.168 15 C 0.063 3.937 16 H 0.077 0.923 17 N -0.385 5.385 18 C -0.378 4.378 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.032 4.032 27 C -0.012 4.012 28 N -0.261 5.261 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.695 -29.294 1.290 30.316 hybrid contribution 1.477 0.544 1.165 1.959 sum -6.218 -28.751 2.455 29.518 Atomic orbital electron populations 1.22852 0.77195 1.02884 1.02535 1.86226 1.22958 1.24685 1.87939 1.19868 0.89468 0.84725 0.92704 1.21068 0.91989 0.99561 1.08210 1.21380 1.00671 0.90698 0.93543 1.20797 0.94739 0.96534 1.04834 1.20207 1.02194 0.91368 0.95761 1.21691 1.02300 0.94630 0.98727 1.20593 0.78719 0.87495 0.83591 1.90732 1.53284 1.66680 1.30859 1.48266 1.61683 1.19003 1.05307 1.21725 0.99572 0.95656 0.84707 1.21875 0.99335 0.96037 0.99634 1.21867 1.00443 0.95807 0.98696 1.20465 0.95487 0.85109 0.92689 0.92295 1.42722 1.58258 1.11345 1.26160 1.19097 1.25521 0.92126 1.01026 0.89064 1.24688 1.00165 0.96268 0.97819 1.69707 1.47602 1.05921 1.34531 0.86555 0.81192 0.77342 0.83438 1.21054 1.21703 1.20334 1.22682 0.96381 0.80131 1.04030 1.22378 0.92352 0.93580 0.92897 1.67340 1.40909 0.98801 1.19068 0.88690 0.92268 0.92290 0.84164 0.83992 0.89667 0.89860 0.89131 0.88928 0.91527 0.90157 0.90971 0.91370 0.91360 0.92183 0.80489 0.93004 0.92319 0.88655 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.93 10.48 -18.70 -0.20 -3.13 16 3 C 0.31 3.09 7.49 -17.12 -0.13 2.97 16 4 C -0.19 -1.55 10.04 -39.28 -0.39 -1.94 16 5 C -0.04 -0.29 9.85 -39.31 -0.39 -0.67 16 6 C -0.17 -1.40 5.15 -104.48 -0.54 -1.94 16 7 C -0.06 -0.52 4.66 -27.89 -0.13 -0.65 16 8 C -0.13 -1.23 4.03 -27.89 -0.11 -1.34 16 9 C 0.51 7.23 7.70 -10.99 -0.08 7.15 16 10 O -0.54 -10.11 15.39 5.55 0.09 -10.02 16 11 N -0.61 -8.52 2.97 -172.75 -0.51 -9.03 16 12 C 0.11 1.06 6.34 -3.71 -0.02 1.04 16 13 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 14 C -0.13 -1.84 5.35 -26.69 -0.14 -1.99 16 15 C 0.17 3.24 2.92 -67.79 -0.20 3.04 16 16 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 17 N -0.74 -17.19 4.93 -53.29 -0.26 -17.45 16 18 C -0.25 -6.97 10.41 -15.06 -0.16 -7.13 16 19 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 22 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 C 0.09 1.65 6.02 -3.69 -0.02 1.63 16 27 C 0.14 1.29 10.85 -17.56 -0.19 1.10 16 28 N -0.54 -5.53 9.22 -13.33 -0.12 -5.65 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 31 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.08 0.86 8.05 -51.93 -0.42 0.45 16 35 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.09 0.67 7.94 -51.93 -0.41 0.25 16 37 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.58 5.95 -51.93 -0.31 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.10 2.07 7.00 -51.93 -0.36 1.70 16 48 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -35.04 390.37 -8.42 -43.45 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.63 Total: 6.20 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.72 Total: 1.14 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.12 Total: -60.68 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.11 Total: -13.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.04 -8.42 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999669695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.743 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds