Wall clock time and date at job start Tue Mar 31 2020 17:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35668 * 117.00228 * 2 1 4 4 C 1.38919 * 119.68499 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.11178 * 179.75169 * 4 3 2 6 6 C 1.38823 * 118.48612 * 0.53401 * 5 4 3 7 7 C 1.50694 * 120.35707 * 179.73598 * 6 5 4 8 8 C 1.52996 * 109.47338 * 269.72321 * 7 6 5 9 9 C 1.50698 * 109.47586 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00285 * 179.97438 * 9 8 7 12 12 C 1.46919 * 120.63242 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77845 * 233.58225 * 12 11 9 14 14 C 1.53039 * 109.31257 * 305.36660 * 13 12 11 15 15 C 1.53046 * 109.52798 * 61.36716 * 14 13 12 16 16 H 1.08998 * 109.49692 * 58.57850 * 15 14 13 17 17 N 1.46493 * 109.49651 * 178.67721 * 15 14 13 18 18 C 1.36937 * 120.00289 * 204.99988 * 17 15 14 19 19 H 1.08002 * 119.99791 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00357 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 119.99772 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47457 * 89.99861 * 22 20 18 24 24 H 1.48510 * 109.46786 * 209.99701 * 22 20 18 25 25 H 1.48497 * 109.47261 * 329.99425 * 22 20 18 26 26 C 1.46931 * 120.63145 * 179.97438 * 11 9 8 27 27 C 1.38049 * 119.28940 * 359.46714 * 6 5 4 28 28 N 1.31968 * 120.83568 * 0.26967 * 27 6 5 29 29 H 1.08998 * 109.47602 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47056 * 299.99758 * 1 2 3 31 31 H 1.08998 * 109.47130 * 59.99275 * 1 2 3 32 32 H 1.08003 * 120.44745 * 0.04572 * 4 3 2 33 33 H 1.08000 * 120.75325 * 180.29676 * 5 4 3 34 34 H 1.09001 * 109.46992 * 149.72659 * 7 6 5 35 35 H 1.09000 * 109.47120 * 29.73073 * 7 6 5 36 36 H 1.09001 * 109.46802 * 60.00222 * 8 7 6 37 37 H 1.09000 * 109.47629 * 300.00441 * 8 7 6 38 38 H 1.08997 * 109.59005 * 113.79701 * 12 11 9 39 39 H 1.09002 * 109.70256 * 353.43937 * 12 11 9 40 40 H 1.08997 * 109.50026 * 185.40903 * 13 12 11 41 41 H 1.09000 * 109.49142 * 65.31548 * 13 12 11 42 42 H 1.09002 * 109.46050 * 181.38302 * 14 13 12 43 43 H 1.09004 * 109.46034 * 301.35518 * 14 13 12 44 44 H 0.97001 * 120.00113 * 24.99839 * 17 15 14 45 45 H 0.97000 * 119.99878 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58959 * 246.20295 * 26 11 9 47 47 H 1.09003 * 109.58181 * 6.48778 * 26 11 9 48 48 H 1.07994 * 119.58438 * 180.29881 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 0.0005 5 6 4.0486 2.5130 -0.0047 6 6 3.2507 3.6490 0.0010 7 6 3.8770 5.0196 0.0017 8 6 4.0884 5.4831 1.4443 9 6 4.7154 6.8535 1.4450 10 8 4.9678 7.4054 0.3949 11 7 4.9946 7.4663 2.6124 12 6 4.6941 6.8109 3.8925 13 6 3.8433 7.7585 4.7440 14 6 4.5639 9.1018 4.8796 15 6 4.7445 9.7275 3.4946 16 1 3.7696 9.8611 3.0258 17 7 5.4060 11.0277 3.6280 18 6 5.2312 11.9868 2.6664 19 1 4.6052 11.7848 1.8097 20 6 5.8575 13.2191 2.7930 21 7 5.6898 14.1407 1.8685 22 14 6.9396 13.5688 4.2750 23 1 8.3373 13.1682 3.9730 24 1 6.8971 15.0200 4.5874 25 1 6.4445 12.7964 5.4427 26 6 5.6063 8.8021 2.6292 27 6 1.8772 3.5097 0.0005 28 7 1.3186 2.3140 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 4.0229 0.3694 0.0002 33 1 5.1255 2.5944 -0.0092 34 1 3.2188 5.7201 -0.5122 35 1 4.8377 4.9803 -0.5119 36 1 4.7467 4.7826 1.9582 37 1 3.1278 5.5224 1.9579 38 1 5.6239 6.5857 4.4149 39 1 4.1434 5.8876 3.7123 40 1 3.6940 7.3243 5.7325 41 1 2.8770 7.9108 4.2633 42 1 3.9721 9.7698 5.5054 43 1 5.5406 8.9454 5.3376 44 1 5.9679 11.2094 4.3975 45 1 6.1272 15.0020 1.9572 46 1 6.6104 8.7390 3.0487 47 1 5.6588 9.1927 1.6129 48 1 1.2520 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999669695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:36 Heat of formation + Delta-G solvation = -54.231831 kcal Electronic energy + Delta-G solvation = -27956.176409 eV Core-core repulsion = 24010.515579 eV Total energy + Delta-G solvation = -3945.660830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66721 -41.13605 -39.12650 -38.68466 -36.29768 -35.18308 -33.97664 -33.15607 -32.88224 -31.18232 -30.06524 -28.24330 -26.75847 -25.69800 -25.03293 -24.33006 -23.10061 -22.59766 -21.63445 -19.94720 -19.48683 -19.35286 -18.24675 -18.11042 -17.00404 -16.89254 -16.70642 -16.51451 -16.07041 -15.79183 -15.48784 -15.37535 -15.21401 -15.01398 -14.74267 -14.51673 -14.41500 -14.17584 -13.97756 -13.81959 -13.62661 -13.42133 -13.04986 -12.96093 -12.87538 -12.58318 -12.50046 -12.09776 -12.04371 -11.99933 -11.91541 -11.83893 -11.73245 -11.36377 -11.13758 -10.86006 -10.73415 -10.57803 -9.79008 -9.35317 -9.23237 -8.04851 -5.40866 0.16257 0.30060 1.36020 1.41572 1.48768 1.69325 2.06473 2.18359 2.46761 2.77123 3.25834 3.36350 3.50256 3.56166 3.91297 3.95104 3.99647 4.04748 4.09533 4.11711 4.22039 4.28710 4.35169 4.37450 4.39468 4.43985 4.48017 4.59110 4.69790 4.73630 4.77538 4.79518 4.88519 4.95218 4.96359 5.01741 5.05955 5.15849 5.20926 5.37918 5.40622 5.46545 5.51277 5.55408 5.74843 6.18966 6.25306 6.53704 6.85954 7.04255 7.26140 7.77632 7.99230 9.16900 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.002002 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.264965 B =13981.783850 C =14347.060779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.292 3.708 4 C -0.189 4.189 5 C -0.033 4.033 6 C -0.163 4.163 7 C -0.050 4.050 8 C -0.119 4.119 9 C 0.500 3.500 10 O -0.597 6.597 11 N -0.609 5.609 12 C 0.101 3.899 13 C -0.124 4.124 14 C -0.122 4.122 15 C 0.169 3.831 16 H 0.029 0.971 17 N -0.745 5.745 18 C -0.237 4.237 19 H 0.044 0.956 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.963 3.037 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.244 1.244 26 C 0.104 3.896 27 C 0.134 3.866 28 N -0.556 5.556 29 H 0.121 0.879 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.370 0.630 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 -32.725 5.466 33.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.114 3.886 4 C -0.209 4.209 5 C -0.058 4.058 6 C -0.166 4.166 7 C -0.089 4.089 8 C -0.158 4.158 9 C 0.290 3.710 10 O -0.478 6.478 11 N -0.341 5.341 12 C -0.020 4.020 13 C -0.162 4.162 14 C -0.160 4.160 15 C 0.060 3.940 16 H 0.047 0.953 17 N -0.388 5.388 18 C -0.368 4.368 19 H 0.062 0.938 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.168 1.168 26 C -0.021 4.021 27 C -0.022 4.022 28 N -0.280 5.280 29 H 0.139 0.861 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.204 0.796 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.123 -32.703 4.751 33.805 hybrid contribution 1.198 1.514 -0.007 1.931 sum -5.925 -31.188 4.744 32.099 Atomic orbital electron populations 1.23006 0.76126 1.04473 1.02062 1.86211 1.24128 1.24689 1.87983 1.20213 0.90325 0.84805 0.93276 1.21327 0.91513 1.00561 1.07538 1.21653 1.01800 0.90012 0.92311 1.20661 0.94524 0.96169 1.05203 1.20075 1.01469 0.91571 0.95783 1.21705 1.03481 0.91405 0.99238 1.21588 0.77766 0.89009 0.82624 1.90714 1.55608 1.68428 1.33024 1.48352 1.61046 1.17391 1.07356 1.22128 1.01085 0.96414 0.82388 1.21890 0.98440 0.93972 1.01918 1.21805 1.01910 0.97548 0.94768 1.20658 0.93565 0.83766 0.96036 0.95286 1.42660 1.58856 1.12132 1.25149 1.18956 1.23855 0.93385 1.00578 0.93774 1.25630 1.02441 0.95973 1.01709 1.69918 1.49592 1.06564 1.37416 0.85295 0.78776 0.77027 0.79942 1.20418 1.22210 1.16787 1.22122 0.96890 0.82529 1.00608 1.22594 0.92935 0.93631 0.92999 1.67331 1.41576 0.99265 1.19827 0.86122 0.92578 0.92891 0.82401 0.81630 0.91336 0.90659 0.85857 0.86575 0.89463 0.86325 0.86976 0.92012 0.91642 0.90604 0.79612 0.93271 0.91668 0.93937 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.65 16 2 O -0.32 -5.71 10.48 -89.84 -0.94 -6.65 16 3 C 0.29 5.42 7.49 84.79 0.63 6.05 16 4 C -0.19 -2.69 10.04 22.47 0.23 -2.47 16 5 C -0.03 -0.41 9.85 22.44 0.22 -0.19 16 6 C -0.16 -2.42 5.15 -19.77 -0.10 -2.52 16 7 C -0.05 -0.87 4.66 29.84 0.14 -0.73 16 8 C -0.12 -1.84 4.03 29.85 0.12 -1.72 16 9 C 0.50 13.91 7.70 87.66 0.67 14.58 16 10 O -0.60 -23.53 15.39 -3.05 -0.05 -23.58 16 11 N -0.61 -16.17 2.97 -818.83 -2.43 -18.61 16 12 C 0.10 1.54 6.34 86.36 0.55 2.09 16 13 C -0.12 -2.08 6.08 30.67 0.19 -1.89 16 14 C -0.12 -3.12 5.35 30.62 0.16 -2.96 16 15 C 0.17 6.37 2.92 45.08 0.13 6.50 16 16 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 17 N -0.74 -34.80 4.93 -322.51 -1.59 -36.39 16 18 C -0.24 -13.96 10.41 84.03 0.88 -13.08 16 19 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.99 -64.91 13.97 21.65 0.30 -64.61 16 22 Si 0.96 45.50 27.74 68.60 1.90 47.40 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.24 -10.06 6.52 99.48 0.65 -9.41 16 26 C 0.10 3.81 6.02 86.37 0.52 4.33 16 27 C 0.13 2.23 10.85 84.63 0.92 3.15 16 28 N -0.56 -10.87 9.22 -308.95 -2.85 -13.72 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.72 8.10 -2.38 -0.02 0.70 16 31 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 35 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 36 H 0.12 1.19 7.94 -2.39 -0.02 1.17 16 37 H 0.12 1.33 7.69 -2.39 -0.02 1.31 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.12 0.99 5.95 -2.39 -0.01 0.97 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.37 16.06 5.66 -92.71 -0.52 15.53 16 45 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.99 7.00 -2.39 -0.02 1.97 16 48 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -83.94 390.37 1.62 -82.32 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.37 Total: 24.54 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.90 Total: 9.28 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -6.57 Total: -133.32 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.99 Total: -30.22 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Total: -83.94 1.62 -82.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999669695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.084 kcal (2) G-P(sol) polarization free energy of solvation -83.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds