Wall clock time and date at job start Tue Mar 31 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00108 * 2 1 4 4 C 1.50700 * 109.47549 * 180.02562 * 3 2 1 5 5 C 1.38351 * 120.34372 * 270.04520 * 4 3 2 6 6 N 1.31933 * 121.07487 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87963 * 359.97438 * 6 5 4 8 8 C 1.39523 * 120.56847 * 359.97438 * 7 6 5 9 9 C 1.47836 * 120.55708 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99753 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00360 * 359.97438 * 9 8 7 12 12 C 1.46495 * 120.00054 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46721 * 274.99889 * 12 11 9 14 14 C 1.53005 * 109.47232 * 299.99735 * 13 12 11 15 15 C 1.52995 * 109.47216 * 300.00576 * 14 13 12 16 16 N 1.46499 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99843 * 85.00139 * 16 15 14 18 18 H 1.08001 * 120.00135 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00466 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99791 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47097 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47104 * 119.99728 * 21 19 17 24 24 H 1.48505 * 109.46985 * 239.99729 * 21 19 17 25 25 C 1.53002 * 109.47490 * 59.99582 * 15 14 13 26 26 C 1.52992 * 109.47063 * 300.00303 * 25 15 14 27 27 C 1.38357 * 120.34826 * 89.99653 * 4 3 2 28 28 H 1.09005 * 109.47592 * 59.99989 * 1 2 3 29 29 H 1.09004 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47501 * 299.99948 * 1 2 3 31 31 H 1.09001 * 109.47292 * 59.99398 * 3 2 1 32 32 H 1.09000 * 109.47031 * 300.00163 * 3 2 1 33 33 H 1.08000 * 119.46214 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.71060 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99327 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47339 * 34.99874 * 12 11 9 37 37 H 1.08990 * 109.47246 * 60.00499 * 13 12 11 38 38 H 1.09001 * 109.46946 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.46939 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.46658 * 60.00431 * 14 13 12 41 41 H 1.09001 * 109.47189 * 299.99531 * 15 14 13 42 42 H 0.97004 * 120.00331 * 264.99616 * 16 15 14 43 43 H 0.96996 * 120.00000 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46885 * 179.97438 * 25 15 14 45 45 H 1.09001 * 109.46946 * 59.99801 * 25 15 14 46 46 H 1.09001 * 109.47560 * 299.99425 * 26 25 15 47 47 H 1.09003 * 109.47341 * 179.97438 * 26 25 15 48 48 H 1.07994 * 120.85854 * 0.04271 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2097 1.1302 1.1931 6 7 5.5247 1.0256 1.2093 7 6 6.2318 0.9697 0.0997 8 6 5.6037 1.0194 -1.1452 9 6 6.3976 0.9560 -2.3906 10 8 5.8399 0.9997 -3.4698 11 7 7.7399 0.8498 -2.3296 12 6 8.5266 0.7875 -3.5638 13 6 8.5814 -0.6584 -4.0612 14 6 9.2347 -1.5401 -2.9950 15 6 10.6546 -1.0409 -2.7204 16 7 11.2799 -1.8848 -1.6990 17 6 11.9006 -3.0508 -2.0603 18 1 11.9288 -3.3484 -3.0981 19 6 12.4926 -3.8506 -1.0925 20 7 12.4579 -3.4881 0.1723 21 14 13.3387 -5.4415 -1.5853 22 1 13.2389 -5.6202 -3.0561 23 1 14.7687 -5.3850 -1.1889 24 1 12.6805 -6.5843 -0.9024 25 6 10.5998 0.4050 -2.2230 26 6 9.9466 1.2866 -3.2892 27 6 4.2089 1.1315 -1.1949 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6686 1.1726 2.1268 34 1 7.3071 0.8845 0.1539 35 1 8.1849 0.8153 -1.4684 36 1 8.0612 1.4156 -4.3234 37 1 7.5699 -1.0139 -4.2569 38 1 9.1671 -0.7048 -4.9793 39 1 9.2742 -2.5700 -3.3495 40 1 8.6493 -1.4937 -2.0767 41 1 11.2400 -1.0873 -3.6387 42 1 11.2544 -1.6176 -0.7669 43 1 12.8712 -4.0473 0.8486 44 1 11.6114 0.7603 -2.0270 45 1 10.0144 0.4513 -1.3047 46 1 10.5319 1.2403 -4.2076 47 1 9.9071 2.3166 -2.9347 48 1 3.6900 1.1734 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026508324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:14 Heat of formation + Delta-G solvation = -43.378754 kcal Electronic energy + Delta-G solvation = -28428.734098 eV Core-core repulsion = 24483.543893 eV Total energy + Delta-G solvation = -3945.190205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98081 -39.73203 -38.18135 -37.81478 -34.73244 -33.40990 -33.02365 -32.06921 -30.56565 -30.45398 -27.94786 -27.59706 -25.93589 -24.82542 -23.58482 -22.98457 -22.24503 -21.16493 -20.76337 -18.93685 -18.17631 -17.25659 -17.06637 -16.86054 -16.83016 -15.88553 -15.65804 -15.49427 -15.25047 -15.08485 -14.41326 -14.19486 -13.88527 -13.61823 -13.46296 -13.42745 -13.24054 -13.11531 -12.84985 -12.39802 -12.35206 -12.18677 -11.89221 -11.86565 -11.64849 -11.02341 -10.88389 -10.83204 -10.42591 -10.34438 -10.19042 -10.16763 -10.13398 -10.11007 -9.72287 -9.62817 -9.57867 -9.46436 -8.98347 -8.83708 -6.94509 -5.76128 -3.04474 0.36478 0.82963 2.69130 3.04005 3.35195 3.43632 3.49598 3.51529 3.74892 4.01777 4.34759 4.41254 4.55049 4.58802 4.59160 4.72362 4.82648 4.92932 4.94644 4.98910 5.05049 5.10013 5.17602 5.27307 5.28465 5.49813 5.54428 5.68343 5.70140 5.73384 5.80158 5.85308 5.90946 5.99513 6.06372 6.20756 6.24951 6.33956 6.46143 6.50087 6.62644 6.66516 6.74076 6.97489 7.12931 7.44107 7.55615 7.71783 8.11714 8.42771 9.53929 10.11887 10.46094 11.46641 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.002555 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.408898 B =10955.831857 C =11925.458584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.109 3.891 4 C -0.156 4.156 5 C 0.142 3.858 6 N -0.484 5.484 7 C 0.144 3.856 8 C -0.186 4.186 9 C 0.564 3.436 10 O -0.539 6.539 11 N -0.709 5.709 12 C 0.149 3.851 13 C -0.129 4.129 14 C -0.133 4.133 15 C 0.177 3.823 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.125 4.125 26 C -0.123 4.123 27 C 0.004 3.996 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.593 14.944 -1.339 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 C -0.158 4.158 5 C -0.015 4.015 6 N -0.191 5.191 7 C -0.014 4.014 8 C -0.192 4.192 9 C 0.350 3.650 10 O -0.418 6.418 11 N -0.361 5.361 12 C 0.045 3.955 13 C -0.168 4.168 14 C -0.173 4.173 15 C 0.067 3.933 16 N -0.366 5.366 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.023 4.023 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.307 14.620 -1.403 25.061 hybrid contribution 0.012 -0.774 -0.200 0.799 sum -20.295 13.846 -1.602 24.620 Atomic orbital electron populations 1.22786 0.80569 1.03151 1.00095 1.88000 1.19943 1.27016 1.95430 1.21217 0.88569 0.85503 1.01552 1.20561 0.95877 1.05114 0.94251 1.22928 0.89969 0.90999 0.97574 1.67792 1.07818 1.12662 1.30832 1.23120 1.00547 0.90930 0.86794 1.21055 0.95143 1.07863 0.95098 1.17950 0.82337 0.76518 0.88166 1.90761 1.70956 1.50469 1.29567 1.46067 1.05895 1.73528 1.10654 1.21032 0.91040 0.97627 0.85832 1.21936 1.00979 0.94453 0.99437 1.22226 0.98483 0.99148 0.97467 1.20230 0.91592 0.88350 0.93081 1.42430 1.65403 1.23329 1.05389 1.19277 1.27038 0.97364 0.93025 0.91196 1.24732 1.01768 0.99178 0.95376 1.69661 1.49981 1.39014 0.99508 0.86154 0.79071 0.83710 0.77493 1.20592 1.21912 1.21927 1.21825 1.00654 0.96481 0.97419 1.21811 0.94382 0.99056 1.00881 1.21605 0.92460 0.89359 0.98847 0.93854 0.89335 0.93860 0.91723 0.91885 0.82158 0.82072 0.76213 0.89714 0.92236 0.91258 0.92080 0.92883 0.93481 0.78395 0.93602 0.91310 0.92760 0.90180 0.91706 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.61 10.69 -35.23 -0.38 -3.99 16 3 C 0.11 0.80 6.08 36.01 0.22 1.02 16 4 C -0.16 -1.50 5.52 -104.54 -0.58 -2.08 16 5 C 0.14 1.41 10.85 -17.47 -0.19 1.22 16 6 N -0.48 -5.79 10.35 -12.91 -0.13 -5.93 16 7 C 0.14 1.67 10.71 -17.13 -0.18 1.49 16 8 C -0.19 -2.25 5.89 -104.82 -0.62 -2.87 16 9 C 0.56 7.70 7.75 -12.33 -0.10 7.60 16 10 O -0.54 -8.84 16.08 5.32 0.09 -8.75 16 11 N -0.71 -8.76 4.19 -54.76 -0.23 -8.99 16 12 C 0.15 1.88 2.78 -67.93 -0.19 1.69 16 13 C -0.13 -1.87 5.60 -26.73 -0.15 -2.02 16 14 C -0.13 -2.33 5.34 -26.73 -0.14 -2.47 16 15 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 16 N -0.73 -17.59 5.12 -53.43 -0.27 -17.87 16 17 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 21 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 C -0.13 -1.84 5.22 -26.73 -0.14 -1.98 16 26 C -0.12 -1.43 5.61 -26.74 -0.15 -1.58 16 27 C 0.00 0.04 9.39 -38.87 -0.37 -0.32 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.16 1.59 6.42 -52.49 -0.34 1.26 16 35 H 0.40 4.48 4.93 -40.82 -0.20 4.28 16 36 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.96 7.60 -51.93 -0.39 0.56 16 41 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.38 9.85 7.80 -40.82 -0.32 9.54 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.76 6.51 -51.93 -0.34 0.42 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.15 1.57 7.74 -52.49 -0.41 1.16 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -33.77 390.63 -8.66 -42.43 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.42 Total: 10.10 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.90 Total: -3.01 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.09 Total: -60.09 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.29 Total: -12.74 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.77 -8.66 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026508324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.949 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds