Wall clock time and date at job start Tue Mar 31 2020 17:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00108 * 2 1 4 4 C 1.50700 * 109.47549 * 180.02562 * 3 2 1 5 5 C 1.38351 * 120.34372 * 270.04520 * 4 3 2 6 6 N 1.31933 * 121.07487 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87963 * 359.97438 * 6 5 4 8 8 C 1.39523 * 120.56847 * 359.97438 * 7 6 5 9 9 C 1.47836 * 120.55708 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99753 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00360 * 359.97438 * 9 8 7 12 12 C 1.46495 * 120.00054 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46721 * 274.99889 * 12 11 9 14 14 C 1.53005 * 109.47232 * 299.99735 * 13 12 11 15 15 C 1.52995 * 109.47216 * 300.00576 * 14 13 12 16 16 N 1.46499 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99843 * 85.00139 * 16 15 14 18 18 H 1.08001 * 120.00135 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00466 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99791 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47097 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47104 * 119.99728 * 21 19 17 24 24 H 1.48505 * 109.46985 * 239.99729 * 21 19 17 25 25 C 1.53002 * 109.47490 * 59.99582 * 15 14 13 26 26 C 1.52992 * 109.47063 * 300.00303 * 25 15 14 27 27 C 1.38357 * 120.34826 * 89.99653 * 4 3 2 28 28 H 1.09005 * 109.47592 * 59.99989 * 1 2 3 29 29 H 1.09004 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47501 * 299.99948 * 1 2 3 31 31 H 1.09001 * 109.47292 * 59.99398 * 3 2 1 32 32 H 1.09000 * 109.47031 * 300.00163 * 3 2 1 33 33 H 1.08000 * 119.46214 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.71060 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99327 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47339 * 34.99874 * 12 11 9 37 37 H 1.08990 * 109.47246 * 60.00499 * 13 12 11 38 38 H 1.09001 * 109.46946 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.46939 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.46658 * 60.00431 * 14 13 12 41 41 H 1.09001 * 109.47189 * 299.99531 * 15 14 13 42 42 H 0.97004 * 120.00331 * 264.99616 * 16 15 14 43 43 H 0.96996 * 120.00000 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46885 * 179.97438 * 25 15 14 45 45 H 1.09001 * 109.46946 * 59.99801 * 25 15 14 46 46 H 1.09001 * 109.47560 * 299.99425 * 26 25 15 47 47 H 1.09003 * 109.47341 * 179.97438 * 26 25 15 48 48 H 1.07994 * 120.85854 * 0.04271 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2097 1.1302 1.1931 6 7 5.5247 1.0256 1.2093 7 6 6.2318 0.9697 0.0997 8 6 5.6037 1.0194 -1.1452 9 6 6.3976 0.9560 -2.3906 10 8 5.8399 0.9997 -3.4698 11 7 7.7399 0.8498 -2.3296 12 6 8.5266 0.7875 -3.5638 13 6 8.5814 -0.6584 -4.0612 14 6 9.2347 -1.5401 -2.9950 15 6 10.6546 -1.0409 -2.7204 16 7 11.2799 -1.8848 -1.6990 17 6 11.9006 -3.0508 -2.0603 18 1 11.9288 -3.3484 -3.0981 19 6 12.4926 -3.8506 -1.0925 20 7 12.4579 -3.4881 0.1723 21 14 13.3387 -5.4415 -1.5853 22 1 13.2389 -5.6202 -3.0561 23 1 14.7687 -5.3850 -1.1889 24 1 12.6805 -6.5843 -0.9024 25 6 10.5998 0.4050 -2.2230 26 6 9.9466 1.2866 -3.2892 27 6 4.2089 1.1315 -1.1949 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6686 1.1726 2.1268 34 1 7.3071 0.8845 0.1539 35 1 8.1849 0.8153 -1.4684 36 1 8.0612 1.4156 -4.3234 37 1 7.5699 -1.0139 -4.2569 38 1 9.1671 -0.7048 -4.9793 39 1 9.2742 -2.5700 -3.3495 40 1 8.6493 -1.4937 -2.0767 41 1 11.2400 -1.0873 -3.6387 42 1 11.2544 -1.6176 -0.7669 43 1 12.8712 -4.0473 0.8486 44 1 11.6114 0.7603 -2.0270 45 1 10.0144 0.4513 -1.3047 46 1 10.5319 1.2403 -4.2076 47 1 9.9071 2.3166 -2.9347 48 1 3.6900 1.1734 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026508324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:13 Heat of formation + Delta-G solvation = -66.322236 kcal Electronic energy + Delta-G solvation = -28429.729002 eV Core-core repulsion = 24483.543893 eV Total energy + Delta-G solvation = -3946.185109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90263 -40.74929 -39.16765 -38.67477 -36.31711 -34.56122 -34.04873 -33.29932 -32.08304 -31.69275 -29.25479 -28.40366 -26.51504 -25.97019 -25.30004 -23.80488 -23.48284 -22.47005 -21.86099 -20.22686 -19.20333 -18.96518 -18.01451 -17.70618 -17.39198 -16.97066 -16.65632 -16.46334 -16.40879 -16.08758 -15.87427 -15.40369 -15.18768 -15.04345 -14.77841 -14.48254 -14.24279 -13.99603 -13.87028 -13.60490 -13.34605 -13.09329 -13.08168 -12.92891 -12.85158 -12.80102 -12.37246 -12.11679 -12.02131 -12.00741 -11.71284 -11.35553 -11.30498 -11.10548 -11.01533 -10.82644 -10.73102 -10.50279 -10.31843 -10.01500 -8.96637 -7.93025 -5.19877 -0.48946 0.00140 1.46311 1.47017 1.56403 1.72374 2.06029 2.56571 2.58613 3.05331 3.23618 3.40321 3.59882 3.69083 3.72832 3.74951 3.82321 3.88065 3.91142 4.01788 4.25935 4.31672 4.35832 4.39846 4.48443 4.53119 4.56139 4.61133 4.62319 4.66529 4.68442 4.82186 4.87542 4.89807 5.02431 5.04388 5.11385 5.17420 5.26785 5.30339 5.41560 5.47889 5.55020 5.58559 5.66194 6.17426 6.30607 6.42589 6.72693 7.08311 7.36452 8.14864 8.36616 9.30545 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.002555 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.408898 B =10955.831857 C =11925.458584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.141 3.859 6 N -0.505 5.505 7 C 0.139 3.861 8 C -0.200 4.200 9 C 0.565 3.435 10 O -0.571 6.571 11 N -0.704 5.704 12 C 0.152 3.848 13 C -0.120 4.120 14 C -0.121 4.121 15 C 0.172 3.828 16 N -0.737 5.737 17 C -0.232 4.232 18 H 0.072 0.928 19 C -0.077 4.077 20 N -0.968 5.968 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.297 1.297 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.005 4.005 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.189 0.811 34 H 0.172 0.828 35 H 0.407 0.593 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.634 16.302 -1.710 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.031 3.969 4 C -0.154 4.154 5 C -0.015 4.015 6 N -0.213 5.213 7 C -0.019 4.019 8 C -0.205 4.205 9 C 0.352 3.648 10 O -0.452 6.452 11 N -0.355 5.355 12 C 0.048 3.952 13 C -0.159 4.159 14 C -0.161 4.161 15 C 0.064 3.936 16 N -0.376 5.376 17 C -0.365 4.365 18 H 0.090 0.910 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.795 3.205 22 H -0.193 1.193 23 H -0.220 1.220 24 H -0.224 1.224 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.032 4.032 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.206 0.794 34 H 0.189 0.811 35 H 0.245 0.755 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.359 16.001 -1.809 26.749 hybrid contribution 0.232 -1.175 -0.100 1.202 sum -21.126 14.826 -1.908 25.880 Atomic orbital electron populations 1.22950 0.78931 1.03781 1.01398 1.87942 1.21843 1.28145 1.95725 1.21351 0.86828 0.85238 1.03482 1.20816 0.97325 1.03771 0.93473 1.23438 0.89497 0.89681 0.98901 1.67829 1.08963 1.13538 1.30981 1.23263 1.01134 0.90871 0.86599 1.20983 0.95543 1.09375 0.94589 1.18169 0.82598 0.75760 0.88228 1.90737 1.71544 1.52155 1.30730 1.46045 1.05656 1.72884 1.10958 1.21023 0.91850 0.96226 0.86130 1.21851 1.00075 0.95076 0.98906 1.22013 0.97919 0.98161 0.98021 1.20477 0.91313 0.90095 0.91698 1.42643 1.65647 1.23301 1.06021 1.19616 1.25762 0.98092 0.92984 0.91029 1.25476 1.03498 1.02441 0.95522 1.69801 1.51620 1.40197 1.00355 0.85180 0.77667 0.79930 0.77675 1.19250 1.22018 1.22440 1.21715 1.01113 0.94025 0.98704 1.21755 0.93112 0.99522 1.00428 1.21760 0.92300 0.89491 0.99612 0.92903 0.89159 0.92172 0.89052 0.90703 0.79387 0.81135 0.75495 0.88971 0.93326 0.89893 0.94992 0.93785 0.93952 0.79559 0.94179 0.91638 0.92150 0.88848 0.89027 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.17 10.69 -148.98 -1.59 -8.76 16 3 C 0.11 1.36 6.08 71.24 0.43 1.79 16 4 C -0.15 -2.72 5.52 -19.81 -0.11 -2.83 16 5 C 0.14 2.59 10.85 84.70 0.92 3.50 16 6 N -0.51 -11.65 10.35 -194.75 -2.01 -13.66 16 7 C 0.14 3.15 10.71 85.02 0.91 4.06 16 8 C -0.20 -4.77 5.89 -19.99 -0.12 -4.89 16 9 C 0.57 15.16 7.75 86.78 0.67 15.83 16 10 O -0.57 -18.56 16.08 -3.88 -0.06 -18.62 16 11 N -0.70 -16.60 4.19 -445.42 -1.86 -18.46 16 12 C 0.15 3.55 2.78 44.99 0.13 3.68 16 13 C -0.12 -3.35 5.60 30.60 0.17 -3.18 16 14 C -0.12 -4.24 5.34 30.59 0.16 -4.08 16 15 C 0.17 6.36 2.77 44.99 0.12 6.49 16 16 N -0.74 -36.09 5.12 -322.94 -1.65 -37.74 16 17 C -0.23 -12.82 9.93 84.03 0.83 -11.99 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 20 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 21 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 C -0.12 -3.26 5.22 30.59 0.16 -3.10 16 26 C -0.11 -2.25 5.61 30.59 0.17 -2.08 16 27 C -0.01 -0.11 9.39 22.73 0.21 0.10 16 28 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.66 8.09 -2.39 -0.02 0.64 16 32 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.17 3.30 6.42 -2.91 -0.02 3.28 16 35 H 0.41 8.62 4.93 -92.71 -0.46 8.16 16 36 H 0.09 2.14 7.58 -2.39 -0.02 2.12 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.04 1.60 7.60 -2.39 -0.02 1.58 16 41 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 42 H 0.37 19.52 7.80 -92.71 -0.72 18.80 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 1.61 6.51 -2.39 -0.02 1.59 16 46 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.15 3.12 7.74 -2.91 -0.02 3.10 16 Total: -1.00 -73.50 390.63 1.31 -72.19 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.20 Total: 34.52 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.39 Total: 0.84 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.25 Total: -128.79 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.65 Total: -27.39 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.50 1.31 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026508324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.871 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds