Wall clock time and date at job start Tue Mar 31 2020 17:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35737 * 117.00237 * 2 1 4 4 C 1.39287 * 120.84424 * 0.02562 * 3 2 1 5 5 C 1.37943 * 119.09452 * 179.97438 * 4 3 2 6 6 N 1.31979 * 120.82487 * 0.02562 * 5 4 3 7 7 C 1.31956 * 121.85804 * 359.65701 * 6 5 4 8 8 C 1.37990 * 120.82000 * 0.63479 * 7 6 5 9 9 C 1.50700 * 120.45049 * 179.68231 * 8 7 6 10 10 C 1.50702 * 109.46869 * 264.71842 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.52997 * 109.47288 * 275.00460 * 13 12 10 15 15 C 1.52997 * 109.47394 * 299.99753 * 14 13 12 16 16 C 1.53005 * 109.46837 * 300.00212 * 15 14 13 17 17 N 1.46504 * 109.46805 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99818 * 84.99985 * 17 16 15 19 19 H 1.08001 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99937 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46963 * 60.00502 * 22 20 18 24 24 H 1.48502 * 109.46641 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46962 * 300.00251 * 22 20 18 26 26 C 1.52997 * 109.47302 * 59.99731 * 16 15 14 27 27 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 28 28 H 1.09004 * 109.47169 * 299.99859 * 1 2 3 29 29 H 1.08997 * 109.47185 * 59.99622 * 1 2 3 30 30 H 1.08996 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.08010 * 120.45513 * 359.95660 * 4 3 2 32 32 H 1.07998 * 119.59493 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.58861 * 180.31314 * 7 6 5 34 34 H 1.09004 * 109.47210 * 144.72135 * 9 8 7 35 35 H 1.08994 * 109.47551 * 24.71787 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 37 37 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 38 38 H 1.09006 * 109.47495 * 60.00048 * 14 13 12 39 39 H 1.09007 * 109.47320 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47567 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.46943 * 59.99679 * 15 14 13 42 42 H 1.08998 * 109.46918 * 299.99482 * 16 15 14 43 43 H 0.96995 * 119.99891 * 264.99692 * 17 16 15 44 44 H 0.97000 * 119.99735 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47024 * 179.97438 * 26 16 15 46 46 H 1.09007 * 109.47320 * 59.99736 * 26 16 15 47 47 H 1.08993 * 109.47607 * 179.97438 * 27 13 12 48 48 H 1.09000 * 109.47556 * 300.00768 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6457 0.0005 7 6 4.0231 2.5509 0.0062 8 6 3.4345 1.3028 -0.0001 9 6 4.2838 0.0579 -0.0008 10 6 4.4645 -0.4261 -1.4164 11 8 3.9542 0.1803 -2.3345 12 7 5.1981 -1.5296 -1.6629 13 6 5.3787 -1.9967 -3.0396 14 6 4.1917 -2.8749 -3.4401 15 6 4.1079 -4.0790 -2.4999 16 6 5.4000 -4.8927 -2.5970 17 7 5.3200 -6.0454 -1.6962 18 6 4.7158 -7.2007 -2.1148 19 1 4.2979 -7.2621 -3.1088 20 6 4.6404 -8.2931 -1.2615 21 7 5.1493 -8.2181 -0.0500 22 14 3.8156 -9.8689 -1.8323 23 1 4.5251 -10.3946 -3.0262 24 1 3.8657 -10.8765 -0.7426 25 1 2.3998 -9.5881 -2.1815 26 6 6.5871 -4.0145 -2.1965 27 6 6.6708 -2.8104 -3.1367 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2244 2.3566 0.0003 32 1 1.4008 4.5173 0.0019 33 1 5.1000 2.6327 0.0107 34 1 3.7932 -0.7169 0.5883 35 1 5.2580 0.2824 0.4335 36 1 5.6064 -2.0145 -0.9287 37 1 5.4384 -1.1389 -3.7095 38 1 3.2711 -2.2953 -3.3710 39 1 4.3259 -3.2222 -4.4646 40 1 3.2619 -4.7045 -2.7849 41 1 3.9735 -3.7315 -1.4756 42 1 5.5344 -5.2403 -3.6213 43 1 5.6951 -5.9901 -0.8034 44 1 5.0963 -8.9813 0.5464 45 1 7.5075 -4.5943 -2.2652 46 1 6.4527 -3.6669 -1.1721 47 1 6.8050 -3.1583 -4.1609 48 1 7.5166 -2.1847 -2.8514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026514721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:27 Heat of formation + Delta-G solvation = -39.850581 kcal Electronic energy + Delta-G solvation = -28968.877293 eV Core-core repulsion = 25023.840082 eV Total energy + Delta-G solvation = -3945.037212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03488 -39.88652 -38.40794 -37.87902 -34.63132 -33.53367 -32.66991 -31.43130 -30.75121 -30.42013 -28.51770 -27.79561 -27.13721 -23.73320 -23.13305 -22.95292 -22.19836 -21.03256 -20.64074 -18.83100 -18.58094 -17.40022 -17.25317 -17.05760 -16.03150 -15.91269 -15.43161 -15.21742 -15.06082 -14.92870 -14.46677 -14.27426 -14.03380 -13.64288 -13.62766 -13.57985 -13.23068 -13.14342 -12.55627 -12.36405 -12.20895 -12.06585 -11.85337 -11.81251 -11.61055 -11.41318 -11.00996 -10.86498 -10.78917 -10.39288 -10.20264 -10.11495 -9.87727 -9.71972 -9.69483 -9.56492 -9.33517 -8.91536 -8.90359 -8.78440 -6.95100 -5.77101 -3.05146 0.85905 1.16011 2.75340 2.88924 3.25687 3.43025 3.47684 3.48354 3.68505 4.19264 4.39181 4.54101 4.58029 4.64729 4.82949 4.85936 4.87651 4.99877 5.07437 5.10534 5.13908 5.15488 5.24018 5.36618 5.50105 5.51289 5.59547 5.70412 5.72244 5.77244 5.84496 5.89776 5.95692 6.04021 6.10804 6.28453 6.32306 6.37845 6.52745 6.55329 6.68830 6.78983 6.94533 6.99592 7.14761 7.63368 7.69745 7.80222 8.34760 8.42095 9.52971 10.11438 10.45904 11.45639 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002679 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.482848 B =10448.075420 C =11440.631998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.509 5.509 7 C 0.143 3.857 8 C -0.146 4.146 9 C -0.093 4.093 10 C 0.519 3.481 11 O -0.541 6.541 12 N -0.718 5.718 13 C 0.149 3.851 14 C -0.128 4.128 15 C -0.130 4.130 16 C 0.178 3.822 17 N -0.725 5.725 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.124 4.124 27 C -0.122 4.122 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.401 0.599 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.382 0.618 44 H 0.255 0.745 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 21.740 1.047 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.130 3.870 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.221 5.221 7 C -0.013 4.013 8 C -0.149 4.149 9 C -0.133 4.133 10 C 0.305 3.695 11 O -0.418 6.418 12 N -0.370 5.370 13 C 0.045 3.955 14 C -0.167 4.167 15 C -0.171 4.171 16 C 0.068 3.932 17 N -0.365 5.365 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.163 4.163 27 C -0.160 4.160 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.237 0.763 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.216 0.784 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.840 22.575 0.292 22.901 hybrid contribution -1.053 -1.955 0.390 2.255 sum -4.893 20.620 0.681 21.203 Atomic orbital electron populations 1.23157 0.77645 1.04675 1.01416 1.86107 1.21955 1.26038 1.87232 1.19134 0.91884 0.84792 0.91157 1.22178 1.01479 0.93184 1.11524 1.22509 0.90337 0.96878 0.92754 1.67722 1.07094 1.31880 1.15383 1.22491 1.00142 0.86143 0.92496 1.19718 0.90862 0.96392 1.07952 1.20429 1.01015 0.96162 0.95742 1.20382 0.78107 0.80264 0.90771 1.90686 1.47990 1.56856 1.46273 1.46119 1.53087 1.28016 1.09794 1.20938 0.95340 0.96482 0.82747 1.21914 0.97697 0.97119 0.99966 1.22195 1.01049 0.95338 0.98507 1.20227 0.91093 0.87291 0.94605 1.42412 1.69513 1.09719 1.14890 1.19196 1.29225 0.90180 0.98130 0.91340 1.24722 1.01749 0.98300 0.96253 1.69645 1.50865 1.30875 1.06924 0.86297 0.79287 0.83457 0.77336 1.21304 1.21731 1.21354 1.21810 1.00181 0.95878 0.98396 1.21795 0.96001 0.96885 1.01366 0.92414 0.92332 0.87631 0.84429 0.82666 0.82332 0.87371 0.87706 0.76305 0.90128 0.92421 0.91612 0.92315 0.92793 0.93632 0.78419 0.93533 0.91514 0.92608 0.90489 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.30 -3.62 9.77 -18.92 -0.18 -3.80 16 3 C 0.18 2.19 6.70 -38.82 -0.26 1.93 16 4 C -0.26 -2.59 9.11 -39.30 -0.36 -2.95 16 5 C 0.13 1.31 11.17 -17.60 -0.20 1.11 16 6 N -0.51 -5.98 10.36 -13.33 -0.14 -6.12 16 7 C 0.14 1.59 10.83 -17.59 -0.19 1.39 16 8 C -0.15 -1.70 4.40 -104.34 -0.46 -2.16 16 9 C -0.09 -0.96 5.61 -29.03 -0.16 -1.13 16 10 C 0.52 6.92 7.79 -10.98 -0.09 6.83 16 11 O -0.54 -9.22 15.70 5.55 0.09 -9.13 16 12 N -0.72 -8.82 4.23 -53.81 -0.23 -9.04 16 13 C 0.15 1.96 2.78 -67.93 -0.19 1.77 16 14 C -0.13 -1.91 5.60 -26.73 -0.15 -2.06 16 15 C -0.13 -2.30 5.34 -26.73 -0.14 -2.45 16 16 C 0.18 3.35 2.77 -67.93 -0.19 3.16 16 17 N -0.73 -17.57 5.12 -53.42 -0.27 -17.85 16 18 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C -0.12 -1.85 5.22 -26.73 -0.14 -1.99 16 27 C -0.12 -1.47 5.61 -26.73 -0.15 -1.62 16 28 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 29 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.14 0.98 6.47 -52.48 -0.34 0.65 16 32 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.11 1.10 7.77 -51.93 -0.40 0.69 16 35 H 0.10 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.40 4.38 6.87 -40.82 -0.28 4.10 16 37 H 0.08 1.11 7.58 -51.93 -0.39 0.71 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.98 7.60 -51.93 -0.39 0.58 16 42 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 43 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.79 6.51 -51.93 -0.34 0.45 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -34.48 388.72 -8.56 -43.03 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.46 Total: 10.99 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.92 Total: -4.07 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.09 Total: -60.11 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.10 Total: -12.94 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.48 -8.56 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026514721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.184 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds