Wall clock time and date at job start Tue Mar 31 2020 17:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35737 * 117.00237 * 2 1 4 4 C 1.39287 * 120.84424 * 0.02562 * 3 2 1 5 5 C 1.37943 * 119.09452 * 179.97438 * 4 3 2 6 6 N 1.31979 * 120.82487 * 0.02562 * 5 4 3 7 7 C 1.31956 * 121.85804 * 359.65701 * 6 5 4 8 8 C 1.37990 * 120.82000 * 0.63479 * 7 6 5 9 9 C 1.50700 * 120.45049 * 179.68231 * 8 7 6 10 10 C 1.50702 * 109.46869 * 264.71842 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.52997 * 109.47288 * 275.00460 * 13 12 10 15 15 C 1.52997 * 109.47394 * 299.99753 * 14 13 12 16 16 C 1.53005 * 109.46837 * 300.00212 * 15 14 13 17 17 N 1.46504 * 109.46805 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99818 * 84.99985 * 17 16 15 19 19 H 1.08001 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99937 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46963 * 60.00502 * 22 20 18 24 24 H 1.48502 * 109.46641 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46962 * 300.00251 * 22 20 18 26 26 C 1.52997 * 109.47302 * 59.99731 * 16 15 14 27 27 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 28 28 H 1.09004 * 109.47169 * 299.99859 * 1 2 3 29 29 H 1.08997 * 109.47185 * 59.99622 * 1 2 3 30 30 H 1.08996 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.08010 * 120.45513 * 359.95660 * 4 3 2 32 32 H 1.07998 * 119.59493 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.58861 * 180.31314 * 7 6 5 34 34 H 1.09004 * 109.47210 * 144.72135 * 9 8 7 35 35 H 1.08994 * 109.47551 * 24.71787 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 37 37 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 38 38 H 1.09006 * 109.47495 * 60.00048 * 14 13 12 39 39 H 1.09007 * 109.47320 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47567 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.46943 * 59.99679 * 15 14 13 42 42 H 1.08998 * 109.46918 * 299.99482 * 16 15 14 43 43 H 0.96995 * 119.99891 * 264.99692 * 17 16 15 44 44 H 0.97000 * 119.99735 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47024 * 179.97438 * 26 16 15 46 46 H 1.09007 * 109.47320 * 59.99736 * 26 16 15 47 47 H 1.08993 * 109.47607 * 179.97438 * 27 13 12 48 48 H 1.09000 * 109.47556 * 300.00768 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6457 0.0005 7 6 4.0231 2.5509 0.0062 8 6 3.4345 1.3028 -0.0001 9 6 4.2838 0.0579 -0.0008 10 6 4.4645 -0.4261 -1.4164 11 8 3.9542 0.1803 -2.3345 12 7 5.1981 -1.5296 -1.6629 13 6 5.3787 -1.9967 -3.0396 14 6 4.1917 -2.8749 -3.4401 15 6 4.1079 -4.0790 -2.4999 16 6 5.4000 -4.8927 -2.5970 17 7 5.3200 -6.0454 -1.6962 18 6 4.7158 -7.2007 -2.1148 19 1 4.2979 -7.2621 -3.1088 20 6 4.6404 -8.2931 -1.2615 21 7 5.1493 -8.2181 -0.0500 22 14 3.8156 -9.8689 -1.8323 23 1 4.5251 -10.3946 -3.0262 24 1 3.8657 -10.8765 -0.7426 25 1 2.3998 -9.5881 -2.1815 26 6 6.5871 -4.0145 -2.1965 27 6 6.6708 -2.8104 -3.1367 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2244 2.3566 0.0003 32 1 1.4008 4.5173 0.0019 33 1 5.1000 2.6327 0.0107 34 1 3.7932 -0.7169 0.5883 35 1 5.2580 0.2824 0.4335 36 1 5.6064 -2.0145 -0.9287 37 1 5.4384 -1.1389 -3.7095 38 1 3.2711 -2.2953 -3.3710 39 1 4.3259 -3.2222 -4.4646 40 1 3.2619 -4.7045 -2.7849 41 1 3.9735 -3.7315 -1.4756 42 1 5.5344 -5.2403 -3.6213 43 1 5.6951 -5.9901 -0.8034 44 1 5.0963 -8.9813 0.5464 45 1 7.5075 -4.5943 -2.2652 46 1 6.4527 -3.6669 -1.1721 47 1 6.8050 -3.1583 -4.1609 48 1 7.5166 -2.1847 -2.8514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026514721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:26 Heat of formation + Delta-G solvation = -63.206848 kcal Electronic energy + Delta-G solvation = -28969.890097 eV Core-core repulsion = 25023.840082 eV Total energy + Delta-G solvation = -3946.050016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84934 -40.96661 -39.25189 -39.06769 -36.25643 -34.43951 -34.16003 -32.40168 -32.18589 -31.68148 -29.70081 -28.65820 -28.20394 -25.61336 -23.89887 -23.88096 -23.45020 -22.39126 -21.71639 -20.14627 -19.34101 -19.05123 -18.24500 -18.13712 -16.99066 -16.90647 -16.76967 -16.34971 -15.97245 -15.92034 -15.73657 -15.31853 -15.17240 -15.14339 -14.87130 -14.64185 -14.40325 -14.11301 -13.88503 -13.59919 -13.23405 -13.08434 -13.06963 -12.92701 -12.78189 -12.74022 -12.50275 -12.19980 -12.13240 -12.01503 -11.98691 -11.67869 -11.29194 -11.08646 -10.93561 -10.80625 -10.52624 -10.10005 -9.94135 -9.72192 -8.96333 -7.92610 -5.19416 0.09631 0.35534 1.46721 1.48653 1.54693 1.73287 2.18074 2.31094 2.56982 2.87731 3.40266 3.48555 3.66409 3.75942 3.83090 3.85774 3.91823 3.93055 4.08293 4.20092 4.29695 4.30409 4.33860 4.37912 4.40751 4.42957 4.62128 4.65011 4.65420 4.68155 4.70593 4.77170 4.85994 4.96352 5.03590 5.09233 5.13335 5.18226 5.27892 5.32902 5.50116 5.58734 5.59128 5.64763 5.67389 6.20357 6.30801 6.64430 7.03103 7.34221 7.36760 8.15036 8.37631 9.30520 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002679 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.482848 B =10448.075420 C =11440.631998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.163 3.837 4 C -0.264 4.264 5 C 0.125 3.875 6 N -0.531 5.531 7 C 0.135 3.865 8 C -0.164 4.164 9 C -0.087 4.087 10 C 0.518 3.482 11 O -0.581 6.581 12 N -0.712 5.712 13 C 0.153 3.847 14 C -0.118 4.118 15 C -0.117 4.117 16 C 0.173 3.827 17 N -0.736 5.736 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.966 3.034 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.282 1.282 26 C -0.115 4.115 27 C -0.109 4.109 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.162 0.838 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.409 0.591 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 22.955 0.712 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.109 3.891 4 C -0.284 4.284 5 C -0.031 4.031 6 N -0.243 5.243 7 C -0.021 4.021 8 C -0.168 4.168 9 C -0.127 4.127 10 C 0.306 3.694 11 O -0.461 6.461 12 N -0.364 5.364 13 C 0.049 3.951 14 C -0.158 4.158 15 C -0.157 4.157 16 C 0.065 3.935 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.795 3.205 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.209 1.209 26 C -0.153 4.153 27 C -0.147 4.147 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.180 0.820 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.127 0.873 35 H 0.157 0.843 36 H 0.247 0.753 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.554 23.809 -0.067 24.073 hybrid contribution -1.206 -2.277 0.452 2.616 sum -4.760 21.532 0.384 22.055 Atomic orbital electron populations 1.23382 0.76062 1.05531 1.02665 1.86063 1.23805 1.26564 1.87418 1.19475 0.92489 0.85371 0.91754 1.22465 1.02739 0.92550 1.10652 1.23036 0.90117 0.98109 0.91810 1.67761 1.08071 1.32327 1.16174 1.22841 1.01181 0.85897 0.92140 1.19946 0.91247 0.96988 1.08574 1.20452 1.02706 0.95747 0.93798 1.20871 0.77160 0.79857 0.91542 1.90666 1.49574 1.58096 1.47727 1.46091 1.52769 1.27777 1.09778 1.20867 0.94835 0.96155 0.83284 1.21818 0.98230 0.95914 0.99791 1.21971 0.99164 0.95768 0.98805 1.20455 0.93284 0.86524 0.93236 1.42607 1.69156 1.10534 1.15229 1.19535 1.28119 0.91203 0.97964 0.91246 1.25461 1.03279 1.01379 0.96593 1.69788 1.52728 1.31397 1.07960 0.85324 0.78474 0.79845 0.76822 1.20489 1.22167 1.20851 1.21692 0.97802 0.96171 0.99663 1.21727 0.96223 0.95575 1.01186 0.90413 0.91775 0.87084 0.82048 0.79827 0.80418 0.87319 0.84325 0.75342 0.89995 0.93824 0.90645 0.95261 0.93412 0.94404 0.79493 0.94125 0.91863 0.91749 0.89541 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.84 113.37 1.12 1.38 16 2 O -0.33 -7.74 9.77 -90.61 -0.88 -8.63 16 3 C 0.16 3.78 6.70 22.76 0.15 3.93 16 4 C -0.26 -4.87 9.11 22.45 0.20 -4.67 16 5 C 0.13 2.31 11.17 84.60 0.95 3.25 16 6 N -0.53 -11.90 10.36 -196.08 -2.03 -13.93 16 7 C 0.13 2.85 10.83 84.62 0.92 3.76 16 8 C -0.16 -3.70 4.40 -19.68 -0.09 -3.79 16 9 C -0.09 -1.69 5.61 29.10 0.16 -1.53 16 10 C 0.52 13.24 7.79 87.66 0.68 13.93 16 11 O -0.58 -19.52 15.70 -3.04 -0.05 -19.57 16 12 N -0.71 -16.28 4.23 -442.54 -1.87 -18.15 16 13 C 0.15 3.73 2.78 44.99 0.13 3.85 16 14 C -0.12 -3.45 5.60 30.59 0.17 -3.27 16 15 C -0.12 -4.12 5.34 30.59 0.16 -3.96 16 16 C 0.17 6.44 2.77 44.99 0.12 6.56 16 17 N -0.74 -35.87 5.12 -322.93 -1.65 -37.53 16 18 C -0.24 -12.98 9.93 84.03 0.83 -12.14 16 19 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 22 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 C -0.11 -3.21 5.22 30.60 0.16 -3.05 16 27 C -0.11 -2.31 5.61 30.60 0.17 -2.14 16 28 H 0.08 0.83 7.71 -2.38 -0.02 0.81 16 29 H 0.06 0.88 7.71 -2.39 -0.02 0.86 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.16 2.01 6.47 -2.91 -0.02 1.99 16 32 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.11 2.11 7.77 -2.38 -0.02 2.09 16 35 H 0.14 1.66 8.06 -2.39 -0.02 1.64 16 36 H 0.41 8.08 6.87 -92.71 -0.64 7.45 16 37 H 0.08 2.08 7.58 -2.39 -0.02 2.06 16 38 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.73 7.60 -2.39 -0.02 1.71 16 42 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 43 H 0.37 19.36 7.80 -92.71 -0.72 18.64 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 1.69 6.51 -2.38 -0.02 1.68 16 47 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.27 388.72 1.75 -73.52 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.38 Total: 36.00 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.31 Total: -1.68 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.28 Total: -127.71 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.93 Total: -28.20 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -75.27 1.75 -73.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026514721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.317 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds