Wall clock time and date at job start Tue Mar 31 2020 17:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 116.99864 * 2 1 4 4 C 1.39138 * 120.47329 * 0.02562 * 3 2 1 5 5 C 1.38539 * 118.37189 * 179.97438 * 4 3 2 6 6 C 1.38249 * 119.22143 * 0.27849 * 5 4 3 7 7 N 1.31849 * 120.88717 * 359.41726 * 6 5 4 8 8 C 1.31845 * 121.77935 * 0.59722 * 7 6 5 9 9 C 1.50698 * 119.65803 * 179.72114 * 8 7 6 10 10 C 1.50703 * 109.46995 * 269.97647 * 9 8 7 11 11 O 1.21284 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99866 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00231 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47194 * 275.00570 * 13 12 10 15 15 C 1.53005 * 109.46972 * 299.99920 * 14 13 12 16 16 C 1.53003 * 109.46650 * 299.99647 * 15 14 13 17 17 N 1.46503 * 109.46771 * 179.97438 * 16 15 14 18 18 C 1.36940 * 119.99567 * 84.99753 * 17 16 15 19 19 H 1.08003 * 120.00074 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00014 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99888 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47370 * 89.99620 * 22 20 18 24 24 H 1.48495 * 109.47424 * 209.99710 * 22 20 18 25 25 H 1.48505 * 109.47297 * 329.99777 * 22 20 18 26 26 C 1.52995 * 109.47088 * 60.00590 * 16 15 14 27 27 C 1.52989 * 109.47337 * 155.00385 * 13 12 10 28 28 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47179 * 300.00109 * 1 2 3 30 30 H 1.09004 * 109.46757 * 59.99801 * 1 2 3 31 31 H 1.07995 * 120.81447 * 359.95459 * 4 3 2 32 32 H 1.08002 * 120.38514 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.55802 * 179.72089 * 6 5 4 34 34 H 1.09002 * 109.47421 * 29.97501 * 9 8 7 35 35 H 1.08999 * 109.47033 * 149.98001 * 9 8 7 36 36 H 0.97001 * 120.00157 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.46531 * 35.00297 * 13 12 10 38 38 H 1.09001 * 109.46906 * 59.99622 * 14 13 12 39 39 H 1.08996 * 109.47073 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.46444 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47380 * 60.00009 * 15 14 13 42 42 H 1.08996 * 109.47091 * 300.00525 * 16 15 14 43 43 H 0.96997 * 120.00093 * 265.00804 * 17 16 15 44 44 H 0.97007 * 119.99790 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47502 * 179.97438 * 26 16 15 46 46 H 1.08999 * 109.47720 * 59.99463 * 26 16 15 47 47 H 1.08999 * 109.47187 * 180.02562 * 27 13 12 48 48 H 1.09005 * 109.47455 * 300.00068 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9716 3.5947 0.0011 6 6 3.3541 3.5976 -0.0048 7 7 4.0334 2.4676 0.0006 8 6 3.4305 1.2950 0.0001 9 6 4.2542 0.0331 0.0001 10 6 4.5288 -0.3876 -1.4207 11 8 4.0984 0.2727 -2.3426 12 7 5.2535 -1.4969 -1.6670 13 6 5.5200 -1.9062 -3.0483 14 6 4.3448 -2.7354 -3.5703 15 6 4.1689 -3.9780 -2.6950 16 6 5.4464 -4.8188 -2.7405 17 7 5.2782 -6.0083 -1.9020 18 6 4.6794 -7.1281 -2.4146 19 1 4.3316 -7.1345 -3.4370 20 6 4.5205 -8.2554 -1.6203 21 7 3.9455 -9.3318 -2.1131 22 14 5.1227 -8.2445 0.1479 23 1 4.0342 -7.7681 1.0387 24 1 5.5203 -9.6194 0.5439 25 1 6.2924 -7.3374 0.2670 26 6 6.6214 -3.9896 -2.2185 27 6 6.7973 -2.7469 -3.0936 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2184 2.3519 0.0002 32 1 1.4233 4.5251 0.0011 33 1 3.8849 4.5382 -0.0090 34 1 5.1981 0.2152 0.5139 35 1 3.7075 -0.7576 0.5139 36 1 5.5980 -2.0247 -0.9297 37 1 5.6453 -1.0209 -3.6717 38 1 3.4347 -2.1364 -3.5379 39 1 4.5429 -3.0395 -4.5980 40 1 3.3320 -4.5689 -3.0672 41 1 3.9706 -3.6735 -1.6674 42 1 5.6446 -5.1231 -3.7682 43 1 5.5907 -6.0025 -0.9838 44 1 3.8341 -10.1195 -1.5579 45 1 7.5315 -4.5886 -2.2505 46 1 6.4233 -3.6851 -1.1909 47 1 6.9958 -3.0510 -4.1214 48 1 7.6346 -2.1562 -2.7218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026548889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:19 Heat of formation + Delta-G solvation = -33.939682 kcal Electronic energy + Delta-G solvation = -29042.487990 eV Core-core repulsion = 25097.707094 eV Total energy + Delta-G solvation = -3944.780896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08273 -39.91060 -38.38800 -37.90049 -34.74679 -33.40417 -32.67962 -31.68685 -30.97264 -30.46976 -28.81127 -27.79534 -27.45938 -23.54842 -23.13837 -22.91447 -22.27493 -20.96483 -20.68863 -18.97005 -18.37818 -17.54660 -17.40637 -17.27388 -16.52718 -16.03323 -15.42831 -15.38885 -15.04759 -14.65164 -14.42008 -14.20138 -14.12064 -13.68819 -13.66158 -13.51752 -13.18473 -12.89096 -12.60138 -12.56124 -12.29667 -12.07326 -11.88468 -11.78330 -11.72813 -11.65591 -11.22726 -10.95359 -10.86426 -10.43989 -10.20679 -10.09155 -10.02329 -9.83208 -9.74443 -9.69341 -9.56322 -8.93031 -8.80542 -8.57583 -7.24592 -5.75766 -3.10790 0.83675 1.02764 2.75910 2.90996 3.17583 3.36937 3.39440 3.45190 3.64304 4.04765 4.32686 4.44104 4.59574 4.68479 4.80784 4.83861 4.86778 4.94126 5.00989 5.03673 5.06743 5.16193 5.22162 5.25735 5.48191 5.53503 5.55841 5.60575 5.67549 5.73500 5.81012 5.83401 5.88326 5.97720 6.02477 6.16602 6.20749 6.31429 6.42952 6.46409 6.61514 6.74975 6.91853 6.92972 7.07240 7.60821 7.75308 8.01571 8.33481 8.43585 9.22564 9.95158 10.15165 11.42808 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002863 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.810320 B = 9776.298937 C =10665.343936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.135 4.135 6 C 0.061 3.939 7 N -0.439 5.439 8 C 0.128 3.872 9 C -0.089 4.089 10 C 0.525 3.475 11 O -0.540 6.540 12 N -0.718 5.718 13 C 0.149 3.851 14 C -0.128 4.128 15 C -0.131 4.131 16 C 0.182 3.818 17 N -0.750 5.750 18 C -0.240 4.240 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.936 5.936 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.128 4.128 27 C -0.121 4.121 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.158 0.842 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.359 0.641 44 H 0.259 0.741 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.079 0.921 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 25.941 5.750 26.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.046 3.954 4 C -0.193 4.193 5 C -0.154 4.154 6 C -0.096 4.096 7 N -0.148 5.148 8 C -0.012 4.012 9 C -0.130 4.130 10 C 0.311 3.689 11 O -0.417 6.417 12 N -0.371 5.371 13 C 0.045 3.955 14 C -0.167 4.167 15 C -0.171 4.171 16 C 0.073 3.927 17 N -0.391 5.391 18 C -0.370 4.370 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.584 5.584 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.203 1.203 26 C -0.166 4.166 27 C -0.160 4.160 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.803 26.043 4.926 26.566 hybrid contribution -0.856 -0.242 1.654 1.878 sum -2.659 25.801 6.580 26.759 Atomic orbital electron populations 1.23140 0.77969 1.04672 1.01186 1.86141 1.21672 1.25702 1.88030 1.19864 0.93105 0.85332 0.97061 1.21666 1.00762 0.92130 1.04715 1.21961 0.95759 0.98180 0.99542 1.22572 0.91441 0.96257 0.99341 1.67437 1.40039 0.97501 1.09849 1.19904 0.87749 0.93323 1.00246 1.20463 1.01711 0.94668 0.96122 1.20199 0.77824 0.80320 0.90578 1.90687 1.50864 1.53899 1.46201 1.46080 1.54901 1.26838 1.09279 1.20956 0.95016 0.97174 0.82401 1.21912 0.97880 0.97078 0.99818 1.22160 1.00889 0.95068 0.99008 1.20206 0.91232 0.86138 0.95125 1.42790 1.72788 1.11751 1.11813 1.19084 1.30216 0.89327 0.98336 0.89272 1.24677 1.00906 0.95997 0.97758 1.69703 1.48926 1.03659 1.36076 0.86541 0.78640 0.76725 0.86554 1.21200 1.21876 1.20338 1.21851 1.00113 0.96008 0.98657 1.21780 0.96172 0.96356 1.01680 0.87604 0.92632 0.92498 0.84313 0.84566 0.82494 0.87071 0.86833 0.76434 0.89977 0.92223 0.91383 0.91773 0.92858 0.92728 0.80814 0.93134 0.91439 0.92727 0.90275 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.19 16 2 O -0.30 -3.52 9.55 -19.48 -0.19 -3.71 16 3 C 0.09 1.12 6.67 -39.08 -0.26 0.86 16 4 C -0.17 -1.57 9.14 -39.14 -0.36 -1.92 16 5 C -0.13 -1.13 10.11 -39.47 -0.40 -1.53 16 6 C 0.06 0.60 11.18 -17.54 -0.20 0.41 16 7 N -0.44 -5.56 10.27 -9.35 -0.10 -5.66 16 8 C 0.13 1.64 5.29 -82.41 -0.44 1.20 16 9 C -0.09 -1.02 5.77 -29.03 -0.17 -1.19 16 10 C 0.53 7.30 7.79 -10.99 -0.09 7.22 16 11 O -0.54 -9.49 15.70 5.55 0.09 -9.41 16 12 N -0.72 -8.88 4.23 -53.80 -0.23 -9.10 16 13 C 0.15 1.94 2.78 -67.93 -0.19 1.75 16 14 C -0.13 -1.88 5.60 -26.73 -0.15 -2.03 16 15 C -0.13 -2.25 5.34 -26.73 -0.14 -2.39 16 16 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 17 N -0.75 -17.15 4.92 -53.42 -0.26 -17.41 16 18 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 19 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 21 N -0.94 -29.30 13.97 55.49 0.78 -28.52 16 22 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 C -0.13 -1.81 5.22 -26.73 -0.14 -1.95 16 27 C -0.12 -1.43 5.61 -26.73 -0.15 -1.58 16 28 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.32 7.70 -51.93 -0.40 -0.08 16 30 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 31 H 0.14 0.93 6.45 -52.49 -0.34 0.59 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.16 7.52 -51.93 -0.39 0.77 16 36 H 0.40 4.27 6.87 -40.82 -0.28 3.99 16 37 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.91 7.60 -51.93 -0.39 0.52 16 42 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 43 H 0.36 8.06 5.66 -40.82 -0.23 7.82 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -35.77 385.40 -8.34 -44.12 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.40 Total: 10.43 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.12 Total: -3.69 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.19 Total: -60.69 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.10 Total: -13.11 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.77 -8.34 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026548889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.177 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds