Wall clock time and date at job start Tue Mar 31 2020 17:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 116.99864 * 2 1 4 4 C 1.39138 * 120.47329 * 0.02562 * 3 2 1 5 5 C 1.38539 * 118.37189 * 179.97438 * 4 3 2 6 6 C 1.38249 * 119.22143 * 0.27849 * 5 4 3 7 7 N 1.31849 * 120.88717 * 359.41726 * 6 5 4 8 8 C 1.31845 * 121.77935 * 0.59722 * 7 6 5 9 9 C 1.50698 * 119.65803 * 179.72114 * 8 7 6 10 10 C 1.50703 * 109.46995 * 269.97647 * 9 8 7 11 11 O 1.21284 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99866 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00231 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47194 * 275.00570 * 13 12 10 15 15 C 1.53005 * 109.46972 * 299.99920 * 14 13 12 16 16 C 1.53003 * 109.46650 * 299.99647 * 15 14 13 17 17 N 1.46503 * 109.46771 * 179.97438 * 16 15 14 18 18 C 1.36940 * 119.99567 * 84.99753 * 17 16 15 19 19 H 1.08003 * 120.00074 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00014 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99888 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47370 * 89.99620 * 22 20 18 24 24 H 1.48495 * 109.47424 * 209.99710 * 22 20 18 25 25 H 1.48505 * 109.47297 * 329.99777 * 22 20 18 26 26 C 1.52995 * 109.47088 * 60.00590 * 16 15 14 27 27 C 1.52989 * 109.47337 * 155.00385 * 13 12 10 28 28 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47179 * 300.00109 * 1 2 3 30 30 H 1.09004 * 109.46757 * 59.99801 * 1 2 3 31 31 H 1.07995 * 120.81447 * 359.95459 * 4 3 2 32 32 H 1.08002 * 120.38514 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.55802 * 179.72089 * 6 5 4 34 34 H 1.09002 * 109.47421 * 29.97501 * 9 8 7 35 35 H 1.08999 * 109.47033 * 149.98001 * 9 8 7 36 36 H 0.97001 * 120.00157 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.46531 * 35.00297 * 13 12 10 38 38 H 1.09001 * 109.46906 * 59.99622 * 14 13 12 39 39 H 1.08996 * 109.47073 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.46444 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47380 * 60.00009 * 15 14 13 42 42 H 1.08996 * 109.47091 * 300.00525 * 16 15 14 43 43 H 0.96997 * 120.00093 * 265.00804 * 17 16 15 44 44 H 0.97007 * 119.99790 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47502 * 179.97438 * 26 16 15 46 46 H 1.08999 * 109.47720 * 59.99463 * 26 16 15 47 47 H 1.08999 * 109.47187 * 180.02562 * 27 13 12 48 48 H 1.09005 * 109.47455 * 300.00068 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9716 3.5947 0.0011 6 6 3.3541 3.5976 -0.0048 7 7 4.0334 2.4676 0.0006 8 6 3.4305 1.2950 0.0001 9 6 4.2542 0.0331 0.0001 10 6 4.5288 -0.3876 -1.4207 11 8 4.0984 0.2727 -2.3426 12 7 5.2535 -1.4969 -1.6670 13 6 5.5200 -1.9062 -3.0483 14 6 4.3448 -2.7354 -3.5703 15 6 4.1689 -3.9780 -2.6950 16 6 5.4464 -4.8188 -2.7405 17 7 5.2782 -6.0083 -1.9020 18 6 4.6794 -7.1281 -2.4146 19 1 4.3316 -7.1345 -3.4370 20 6 4.5205 -8.2554 -1.6203 21 7 3.9455 -9.3318 -2.1131 22 14 5.1227 -8.2445 0.1479 23 1 4.0342 -7.7681 1.0387 24 1 5.5203 -9.6194 0.5439 25 1 6.2924 -7.3374 0.2670 26 6 6.6214 -3.9896 -2.2185 27 6 6.7973 -2.7469 -3.0936 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2184 2.3519 0.0002 32 1 1.4233 4.5251 0.0011 33 1 3.8849 4.5382 -0.0090 34 1 5.1981 0.2152 0.5139 35 1 3.7075 -0.7576 0.5139 36 1 5.5980 -2.0247 -0.9297 37 1 5.6453 -1.0209 -3.6717 38 1 3.4347 -2.1364 -3.5379 39 1 4.5429 -3.0395 -4.5980 40 1 3.3320 -4.5689 -3.0672 41 1 3.9706 -3.6735 -1.6674 42 1 5.6446 -5.1231 -3.7682 43 1 5.5907 -6.0025 -0.9838 44 1 3.8341 -10.1195 -1.5579 45 1 7.5315 -4.5886 -2.2505 46 1 6.4233 -3.6851 -1.1909 47 1 6.9958 -3.0510 -4.1214 48 1 7.6346 -2.1562 -2.7218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026548889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:19 Heat of formation + Delta-G solvation = -59.403599 kcal Electronic energy + Delta-G solvation = -29043.592188 eV Core-core repulsion = 25097.707094 eV Total energy + Delta-G solvation = -3945.885094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87146 -40.99201 -39.27587 -39.00977 -36.37093 -34.38088 -34.08440 -32.85351 -32.32818 -31.69707 -30.00207 -28.74995 -28.28969 -25.32809 -23.90605 -23.84790 -23.48777 -22.36463 -21.80699 -20.37358 -19.42576 -19.08117 -18.29623 -18.15642 -17.34951 -16.90493 -16.74250 -16.51143 -16.35628 -16.00065 -15.38684 -15.29997 -15.02739 -14.88500 -14.76522 -14.66177 -14.36572 -14.28504 -14.04103 -13.63186 -13.29083 -13.22667 -13.10442 -12.97429 -12.84565 -12.77252 -12.37550 -12.33532 -12.17424 -12.03812 -11.80595 -11.70150 -11.39068 -11.11597 -11.00720 -10.84442 -10.61521 -10.57816 -9.97112 -9.33571 -9.26470 -7.99271 -5.32105 0.10344 0.29535 1.39619 1.43955 1.51374 1.70762 2.21021 2.26367 2.51648 2.85065 3.30160 3.32075 3.55052 3.63268 3.81625 3.82055 3.90291 3.97999 4.08243 4.21816 4.27427 4.29683 4.31463 4.32940 4.38458 4.47391 4.50070 4.60311 4.65652 4.67266 4.67420 4.78103 4.84803 5.01592 5.05163 5.10251 5.11741 5.17636 5.25890 5.31386 5.50595 5.51062 5.60387 5.64603 5.81539 6.21894 6.25273 6.61661 6.99963 7.12205 7.31450 7.88916 8.08775 9.22699 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002863 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.810320 B = 9776.298937 C =10665.343936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.074 3.926 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.047 3.953 7 N -0.466 5.466 8 C 0.097 3.903 9 C -0.084 4.084 10 C 0.524 3.476 11 O -0.581 6.581 12 N -0.710 5.710 13 C 0.153 3.847 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.176 3.824 17 N -0.750 5.750 18 C -0.225 4.225 19 H 0.051 0.949 20 C -0.070 4.070 21 N -0.989 5.989 22 Si 0.958 3.042 23 H -0.280 1.280 24 H -0.300 1.300 25 H -0.245 1.245 26 C -0.119 4.119 27 C -0.110 4.110 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.366 0.634 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 28.608 7.667 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.026 3.974 4 C -0.197 4.197 5 C -0.146 4.146 6 C -0.110 4.110 7 N -0.175 5.175 8 C -0.042 4.042 9 C -0.124 4.124 10 C 0.311 3.689 11 O -0.460 6.460 12 N -0.363 5.363 13 C 0.049 3.951 14 C -0.158 4.158 15 C -0.159 4.159 16 C 0.068 3.932 17 N -0.393 5.393 18 C -0.357 4.357 19 H 0.069 0.931 20 C -0.261 4.261 21 N -0.639 5.639 22 Si 0.785 3.215 23 H -0.207 1.207 24 H -0.227 1.227 25 H -0.169 1.169 26 C -0.157 4.157 27 C -0.148 4.148 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.182 0.818 32 H 0.191 0.809 33 H 0.200 0.800 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.199 0.801 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.661 28.749 6.852 29.562 hybrid contribution -1.311 -0.987 0.935 1.888 sum -1.971 27.762 7.787 28.901 Atomic orbital electron populations 1.23363 0.76370 1.05533 1.02428 1.86090 1.23494 1.26142 1.88260 1.20078 0.93317 0.86160 0.97822 1.22062 1.02097 0.91744 1.03755 1.22381 0.95436 0.99316 0.97500 1.23149 0.92579 0.96508 0.98758 1.67416 1.41092 0.98204 1.10827 1.20102 0.88549 0.93748 1.01847 1.20466 1.02707 0.94798 0.94458 1.20651 0.77019 0.80001 0.91222 1.90660 1.52515 1.55251 1.47611 1.46021 1.54374 1.26514 1.09346 1.20872 0.94658 0.96826 0.82758 1.21814 0.98387 0.95833 0.99768 1.21963 0.99001 0.95444 0.99514 1.20432 0.93450 0.85310 0.93963 1.42780 1.72289 1.11686 1.12562 1.19013 1.29000 0.90904 0.96741 0.93125 1.25552 1.01977 0.95602 1.02960 1.69903 1.51340 1.04630 1.38077 0.85360 0.79155 0.76838 0.80123 1.20654 1.22700 1.16878 1.21753 0.97860 0.96202 0.99892 1.21725 0.96134 0.95094 1.01850 0.87052 0.90570 0.91994 0.81846 0.80932 0.80005 0.85221 0.86016 0.75179 0.90230 0.93684 0.90857 0.95387 0.92497 0.94351 0.80059 0.93519 0.91048 0.90989 0.89573 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.83 113.37 1.11 1.36 16 2 O -0.33 -7.47 9.55 -92.62 -0.88 -8.35 16 3 C 0.07 1.71 6.67 22.60 0.15 1.86 16 4 C -0.17 -2.89 9.14 22.56 0.21 -2.69 16 5 C -0.13 -1.82 10.11 22.34 0.23 -1.59 16 6 C 0.05 0.85 11.18 84.69 0.95 1.80 16 7 N -0.47 -11.39 10.27 -183.51 -1.88 -13.27 16 8 C 0.10 2.42 5.29 42.67 0.23 2.64 16 9 C -0.08 -1.85 5.77 29.10 0.17 -1.68 16 10 C 0.52 14.12 7.79 87.66 0.68 14.80 16 11 O -0.58 -20.40 15.70 -3.04 -0.05 -20.45 16 12 N -0.71 -16.20 4.23 -442.52 -1.87 -18.07 16 13 C 0.15 3.72 2.78 44.99 0.13 3.85 16 14 C -0.12 -3.47 5.60 30.60 0.17 -3.29 16 15 C -0.12 -4.10 5.34 30.60 0.16 -3.94 16 16 C 0.18 6.29 2.77 44.99 0.12 6.41 16 17 N -0.75 -33.77 4.92 -322.94 -1.59 -35.36 16 18 C -0.23 -12.79 10.41 84.03 0.87 -11.91 16 19 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.99 -63.88 13.97 21.65 0.30 -63.58 16 22 Si 0.96 44.90 27.74 68.60 1.90 46.80 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.24 -10.04 6.52 99.48 0.65 -9.39 16 26 C -0.12 -3.02 5.22 30.59 0.16 -2.86 16 27 C -0.11 -2.24 5.61 30.59 0.17 -2.07 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 0.74 7.70 -2.39 -0.02 0.72 16 30 H 0.06 0.79 7.70 -2.38 -0.02 0.77 16 31 H 0.16 1.78 6.45 -2.91 -0.02 1.76 16 32 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.38 7.52 -2.39 -0.02 2.37 16 36 H 0.41 7.60 6.87 -92.71 -0.64 6.97 16 37 H 0.08 2.07 7.58 -2.39 -0.02 2.05 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.90 7.60 -2.39 -0.02 1.88 16 42 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 43 H 0.37 15.50 5.66 -92.71 -0.52 14.98 16 44 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 1.60 6.51 -2.39 -0.02 1.59 16 47 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -81.09 385.40 1.66 -79.43 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.24 Total: 33.82 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.98 Total: -0.97 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -5.05 Total: -130.29 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.93 Total: -28.80 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -81.09 1.66 -79.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026548889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.024 kcal (2) G-P(sol) polarization free energy of solvation -81.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds