Wall clock time and date at job start Tue Mar 31 2020 17:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00524 * 2 1 4 4 H 1.07996 * 120.00355 * 202.06604 * 3 2 1 5 5 C 1.38812 * 119.99943 * 22.05939 * 3 2 1 6 6 N 1.31621 * 119.99704 * 12.42914 * 5 3 2 7 7 Si 1.86798 * 120.00047 * 192.43220 * 5 3 2 8 8 H 1.48499 * 109.47282 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46798 * 120.00289 * 7 5 3 10 10 H 1.48501 * 109.47044 * 240.00178 * 7 5 3 11 11 C 1.46507 * 120.00066 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.49907 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49581 * 59.99514 * 11 2 1 14 14 C 1.53036 * 109.53919 * 178.65209 * 13 11 2 15 15 C 1.53199 * 109.30910 * 61.36873 * 14 13 11 16 16 N 1.46929 * 108.77540 * 305.36346 * 15 14 13 17 17 C 1.34777 * 120.63193 * 233.58537 * 16 15 14 18 18 O 1.21280 * 120.00280 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.99982 * 0.02562 * 17 16 15 20 20 C 1.53006 * 109.47381 * 179.97438 * 19 17 16 21 21 N 1.46491 * 109.47225 * 179.97438 * 20 19 17 22 22 C 1.35763 * 119.62783 * 90.00143 * 21 20 19 23 23 C 1.35347 * 120.70422 * 180.02562 * 22 21 20 24 24 C 1.40194 * 119.94896 * 359.97438 * 23 22 21 25 25 C 1.36397 * 119.26451 * 359.97438 * 24 23 22 26 26 C 1.34664 * 119.62519 * 269.72958 * 21 20 19 27 27 O 1.22056 * 119.98497 * 359.97438 * 26 21 20 28 28 C 1.46928 * 118.73697 * 53.86435 * 16 15 14 29 29 H 1.09003 * 109.47327 * 274.30958 * 1 2 3 30 30 H 1.09001 * 109.46980 * 34.30305 * 1 2 3 31 31 H 1.08994 * 109.47269 * 154.30585 * 1 2 3 32 32 H 0.96999 * 119.99669 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.45505 * 58.63549 * 13 11 2 34 34 H 1.08996 * 109.44902 * 298.66973 * 13 11 2 35 35 H 1.09004 * 109.49845 * 301.42288 * 14 13 11 36 36 H 1.08994 * 109.49896 * 181.31575 * 14 13 11 37 37 H 1.08998 * 109.58365 * 185.58191 * 15 14 13 38 38 H 1.08991 * 109.58848 * 65.15453 * 15 14 13 39 39 H 1.08997 * 109.47302 * 59.99687 * 19 17 16 40 40 H 1.08998 * 109.47483 * 299.99987 * 19 17 16 41 41 H 1.08997 * 109.46640 * 60.00090 * 20 19 17 42 42 H 1.09002 * 109.46655 * 300.00091 * 20 19 17 43 43 H 1.08000 * 119.64564 * 359.97438 * 22 21 20 44 44 H 1.08001 * 120.02629 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.36689 * 179.97438 * 24 23 22 46 46 H 1.08006 * 120.34654 * 180.02562 * 25 24 23 47 47 H 1.08988 * 109.58617 * 65.92354 * 28 16 15 48 48 H 1.08995 * 109.58207 * 186.35055 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1704 1.2201 -0.3513 5 6 1.5320 2.3441 0.4515 6 7 0.3901 2.2701 1.1019 7 14 2.3212 4.0075 0.1359 8 1 3.5916 3.8192 -0.6097 9 1 1.3968 4.8499 -0.6649 10 1 2.6028 4.6757 1.4318 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8281 -2.0724 -1.2484 14 6 2.6180 -3.3830 -1.2659 15 6 2.2507 -4.2124 -0.0313 16 7 2.4665 -3.3937 1.1696 17 6 3.2374 -3.8449 2.1789 18 8 3.4074 -3.1598 3.1651 19 6 3.8881 -5.2007 2.0819 20 6 4.7020 -5.4677 3.3498 21 7 5.3341 -6.7858 3.2558 22 6 6.5710 -6.8996 2.7078 23 6 7.1751 -8.1068 2.6096 24 6 6.5224 -9.2560 3.0772 25 6 5.2802 -9.1397 3.6284 26 6 4.6839 -7.8704 3.7189 27 8 3.5746 -7.7514 4.2138 28 6 1.8209 -2.0765 1.2520 29 1 -0.3634 0.0772 1.0248 30 1 -0.3633 0.8489 -0.5792 31 1 -0.3633 -0.9260 -0.4455 32 1 -0.0414 3.0794 1.4178 33 1 2.0691 -1.4913 -2.1385 34 1 0.7605 -2.2919 -1.2361 35 1 3.6858 -3.1645 -1.2528 36 1 2.3719 -3.9441 -2.1673 37 1 2.8817 -5.1000 0.0135 38 1 1.2034 -4.5085 -0.0883 39 1 4.5482 -5.2258 1.2149 40 1 3.1193 -5.9660 1.9755 41 1 4.0422 -5.4425 4.2170 42 1 5.4709 -4.7023 3.4557 43 1 7.0780 -6.0174 2.3457 44 1 8.1591 -8.1846 2.1714 45 1 6.9980 -10.2228 3.0019 46 1 4.7617 -10.0136 3.9946 47 1 0.7392 -2.2020 1.2974 48 1 2.1681 -1.5546 2.1436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027435011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:09 Heat of formation + Delta-G solvation = -30.847947 kcal Electronic energy + Delta-G solvation = -28891.686038 eV Core-core repulsion = 24947.039209 eV Total energy + Delta-G solvation = -3944.646828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36627 -41.22742 -39.00373 -37.95320 -36.80746 -36.03800 -34.04960 -32.83536 -32.32214 -30.75909 -30.29686 -28.08090 -27.09680 -25.74533 -25.08829 -24.50859 -23.12574 -23.04053 -21.03810 -19.89403 -18.95652 -18.71261 -18.26538 -17.81305 -17.26346 -17.04839 -16.98242 -16.64433 -16.33199 -15.70350 -15.51323 -15.32668 -15.20348 -15.06815 -14.70128 -14.58221 -14.40123 -13.96912 -13.79916 -13.71625 -13.49135 -13.21767 -12.95548 -12.86210 -12.80985 -12.67288 -12.51481 -12.29806 -12.21809 -12.10282 -12.07957 -11.75644 -11.66968 -11.40071 -11.14651 -10.99364 -10.86402 -10.67248 -9.73082 -8.94305 -8.79224 -7.85422 -5.33863 -0.03591 0.96228 1.43528 1.44659 1.51403 1.53445 1.55584 2.03801 2.49233 2.72275 3.28317 3.43474 3.58635 3.64319 3.69944 3.88012 3.97762 4.03421 4.06695 4.09958 4.21502 4.24544 4.29543 4.36678 4.37952 4.50347 4.60358 4.68065 4.69189 4.76106 4.77726 4.87994 4.93672 5.04374 5.11744 5.15923 5.24743 5.24880 5.41262 5.44871 5.46231 5.55461 5.61173 5.69496 5.70905 6.14218 6.30061 6.40510 7.01374 7.09088 7.12668 7.84101 8.26824 9.17738 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.002374 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.258950 B =11791.253470 C =12044.773148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.264 1.264 9 H -0.288 1.288 10 H -0.295 1.295 11 C 0.169 3.831 12 H 0.050 0.950 13 C -0.125 4.125 14 C -0.120 4.120 15 C 0.101 3.899 16 N -0.605 5.605 17 C 0.510 3.490 18 O -0.592 6.592 19 C -0.134 4.134 20 C 0.108 3.892 21 N -0.491 5.491 22 C 0.128 3.872 23 C -0.226 4.226 24 C 0.008 3.992 25 C -0.281 4.281 26 C 0.491 3.509 27 O -0.615 6.615 28 C 0.113 3.887 29 H -0.004 1.004 30 H 0.018 0.982 31 H 0.034 0.966 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.199 0.801 44 H 0.183 0.817 45 H 0.168 0.832 46 H 0.143 0.857 47 H 0.053 0.947 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.936 -25.643 -5.414 30.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.188 1.188 9 H -0.215 1.215 10 H -0.223 1.223 11 C 0.061 3.939 12 H 0.069 0.931 13 C -0.164 4.164 14 C -0.158 4.158 15 C -0.020 4.020 16 N -0.337 5.337 17 C 0.299 3.701 18 O -0.473 6.473 19 C -0.174 4.174 20 C -0.014 4.014 21 N -0.200 5.200 22 C 0.002 3.998 23 C -0.247 4.247 24 C -0.013 4.013 25 C -0.303 4.303 26 C 0.296 3.704 27 O -0.503 6.503 28 C -0.013 4.013 29 H 0.014 0.986 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.157 0.843 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.215 0.785 44 H 0.201 0.799 45 H 0.185 0.815 46 H 0.161 0.839 47 H 0.071 0.929 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.211 -25.038 -4.556 29.648 hybrid contribution -0.562 1.587 0.636 1.800 sum 14.649 -23.451 -3.920 27.926 Atomic orbital electron populations 1.20480 0.82712 0.96141 0.97173 1.44204 1.02139 1.01185 1.85703 1.19587 0.97975 0.86434 1.35190 0.91173 1.25842 0.98585 1.02048 0.98658 1.70259 1.19819 1.27382 1.41181 0.85148 0.78152 0.79854 0.76965 1.18824 1.21517 1.22275 1.20873 0.95063 0.85028 0.92924 0.93135 1.21943 1.00448 0.96551 0.97462 1.21875 1.00537 0.95022 0.98361 1.22127 1.03171 0.93958 0.82771 1.48330 1.48149 1.18113 1.19110 1.21025 0.78514 0.88637 0.81906 1.90716 1.63415 1.60336 1.32825 1.21871 1.01540 0.93220 1.00801 1.21581 0.98866 0.82378 0.98560 1.45564 1.16415 1.09207 1.48847 1.22779 0.83264 1.02236 0.91511 1.21202 1.04080 0.90387 1.09080 1.21891 0.91446 1.01036 0.86964 1.22100 1.00058 0.95711 1.12405 1.17744 0.86182 0.86220 0.80218 1.90949 1.22401 1.86758 1.50180 1.22084 0.96168 0.82962 1.00040 0.98560 0.96304 0.94739 0.94316 0.92289 0.92252 0.91090 0.87401 0.86467 0.90477 0.84266 0.87969 0.91155 0.86546 0.78456 0.79936 0.81473 0.83937 0.92876 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.91 127.77 1.01 10.03 16 2 N -0.61 -30.85 2.82 -701.52 -1.98 -32.83 16 3 C -0.26 -14.64 9.60 84.03 0.81 -13.83 16 4 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 5 C -0.06 -3.24 5.11 84.86 0.43 -2.81 16 6 N -0.94 -57.30 10.63 21.65 0.23 -57.07 16 7 Si 0.97 46.09 29.57 68.60 2.03 48.12 16 8 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 11 C 0.17 6.78 2.75 45.22 0.12 6.90 16 12 H 0.05 2.14 7.86 -2.39 -0.02 2.12 16 13 C -0.12 -3.72 5.13 30.62 0.16 -3.56 16 14 C -0.12 -2.28 6.08 30.67 0.19 -2.10 16 15 C 0.10 1.91 6.34 86.36 0.55 2.46 16 16 N -0.60 -17.85 2.97 -818.07 -2.43 -20.28 16 17 C 0.51 15.43 7.70 87.66 0.67 16.10 16 18 O -0.59 -24.05 15.39 -3.03 -0.05 -24.09 16 19 C -0.13 -2.57 4.37 29.85 0.13 -2.44 16 20 C 0.11 2.27 4.63 86.38 0.40 2.67 16 21 N -0.49 -8.52 2.58 -650.99 -1.68 -10.20 16 22 C 0.13 1.01 10.28 83.42 0.86 1.86 16 23 C -0.23 -1.11 10.01 22.08 0.22 -0.89 16 24 C 0.01 0.07 10.10 22.32 0.23 0.29 16 25 C -0.28 -4.77 9.99 22.40 0.22 -4.55 16 26 C 0.49 11.91 7.41 84.82 0.63 12.54 16 27 O -0.61 -21.52 16.63 -5.50 -0.09 -21.61 16 28 C 0.11 4.47 5.81 86.51 0.50 4.97 16 29 H 0.00 -0.22 7.41 -2.39 -0.02 -0.24 16 30 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 31 H 0.03 1.45 6.46 -2.39 -0.02 1.43 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.78 6.71 -2.39 -0.02 1.76 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.36 5.93 -2.39 -0.01 1.34 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.14 1.49 7.69 -2.39 -0.02 1.47 16 40 H 0.10 2.01 7.94 -2.39 -0.02 1.99 16 41 H 0.07 2.07 7.33 -2.39 -0.02 2.05 16 42 H 0.12 2.05 7.97 -2.39 -0.02 2.03 16 43 H 0.20 0.11 8.04 -2.91 -0.02 0.09 16 44 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 45 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 46 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 47 H 0.05 2.17 7.53 -2.39 -0.02 2.15 16 48 H 0.04 2.21 7.00 -2.39 -0.02 2.19 16 Total: -1.00 -86.76 383.09 4.11 -82.65 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.95 Total: 7.66 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 7.13 Total: 27.65 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -5.86 Total: -120.37 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.14 Total: -45.70 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -86.76 4.11 -82.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027435011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.801 kcal (2) G-P(sol) polarization free energy of solvation -86.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds