Wall clock time and date at job start Tue Mar 31 2020 17:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00112 * 2 1 4 4 H 1.07997 * 120.00306 * 146.33540 * 3 2 1 5 5 C 1.38817 * 119.99828 * 326.33038 * 3 2 1 6 6 N 1.31617 * 119.99820 * 154.17250 * 5 3 2 7 7 Si 1.86791 * 120.00161 * 334.17704 * 5 3 2 8 8 H 1.48504 * 109.47531 * 95.35024 * 7 5 3 9 9 H 1.48499 * 109.47417 * 215.34984 * 7 5 3 10 10 H 1.48504 * 109.47339 * 335.35112 * 7 5 3 11 11 C 1.46500 * 120.00258 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.50330 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49847 * 59.99556 * 11 2 1 14 14 C 1.53043 * 109.54007 * 178.68492 * 13 11 2 15 15 C 1.53188 * 109.31237 * 61.36643 * 14 13 11 16 16 N 1.46934 * 108.89276 * 305.29538 * 15 14 13 17 17 C 1.34777 * 120.62646 * 233.68040 * 16 15 14 18 18 O 1.21687 * 120.00235 * 6.74200 * 17 16 15 19 19 C 1.46682 * 119.99670 * 186.73748 * 17 16 15 20 20 C 1.38161 * 126.18808 * 198.96318 * 19 17 16 21 21 C 1.38941 * 106.94534 * 179.84387 * 20 19 17 22 22 C 1.36280 * 108.02225 * 0.46290 * 21 20 19 23 23 N 1.34737 * 108.83877 * 359.66433 * 22 21 20 24 24 H 0.96990 * 125.71455 * 180.09844 * 23 22 21 25 25 C 1.51089 * 122.57872 * 179.56881 * 22 21 20 26 26 C 1.53547 * 107.71981 * 344.13095 * 25 22 21 27 27 O 1.42992 * 109.68917 * 48.02137 * 26 25 22 28 28 C 1.43418 * 114.33532 * 288.96760 * 27 26 25 29 29 C 1.47203 * 118.55524 * 53.54072 * 16 15 14 30 30 H 1.09005 * 109.46827 * 269.99457 * 1 2 3 31 31 H 1.08996 * 109.47275 * 29.99656 * 1 2 3 32 32 H 1.09000 * 109.47064 * 150.00273 * 1 2 3 33 33 H 0.96995 * 120.00136 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.45959 * 58.66342 * 13 11 2 35 35 H 1.09003 * 109.46246 * 298.70513 * 13 11 2 36 36 H 1.08995 * 109.49818 * 301.41476 * 14 13 11 37 37 H 1.09000 * 109.52306 * 181.33170 * 14 13 11 38 38 H 1.09004 * 109.59117 * 65.15269 * 15 14 13 39 39 H 1.08995 * 109.58961 * 185.43690 * 15 14 13 40 40 H 1.07997 * 126.52608 * 359.97438 * 20 19 17 41 41 H 1.08999 * 109.81004 * 103.69796 * 25 22 21 42 42 H 1.09004 * 109.80757 * 224.58493 * 25 22 21 43 43 H 1.09007 * 109.43771 * 287.95828 * 26 25 22 44 44 H 1.08994 * 109.43507 * 168.09056 * 26 25 22 45 45 H 1.08994 * 109.76577 * 291.10763 * 28 27 26 46 46 H 1.09001 * 109.80496 * 170.36408 * 28 27 26 47 47 H 1.09001 * 109.53408 * 186.67493 * 29 16 15 48 48 H 1.08993 * 109.56109 * 66.29821 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0938 1.2643 0.5184 5 6 1.6302 2.2872 -0.6665 6 7 1.9596 3.5030 -0.2848 7 14 0.4638 2.0438 -2.1050 8 1 -0.9389 2.1274 -1.6246 9 1 0.7030 3.1004 -3.1206 10 1 0.6998 0.7098 -2.7135 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8282 -2.0713 -1.2503 14 6 2.6176 -3.3823 -1.2685 15 6 2.2497 -4.2123 -0.0346 16 7 2.4662 -3.3975 1.1688 17 6 3.2378 -3.8519 2.1760 18 8 3.8610 -4.8889 2.0450 19 6 3.3263 -3.0965 3.4302 20 6 4.3176 -3.2145 4.3854 21 6 4.0119 -2.3154 5.3995 22 6 2.8547 -1.6787 5.0638 23 7 2.4320 -2.1441 3.8722 24 1 1.6328 -1.8571 3.4035 25 6 2.2160 -0.6325 5.9472 26 6 2.8456 -0.7515 7.3426 27 8 4.2695 -0.8102 7.2254 28 6 4.7670 -2.0377 6.6753 29 6 1.8249 -2.0749 1.2477 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.5964 4.2726 -0.7502 34 1 2.0697 -1.4896 -2.1399 35 1 0.7605 -2.2904 -1.2387 36 1 3.6854 -3.1642 -1.2550 37 1 2.3720 -3.9428 -2.1705 38 1 1.2021 -4.5080 -0.0921 39 1 2.8785 -5.1016 0.0083 40 1 5.1692 -3.8778 4.3494 41 1 2.4054 0.3606 5.5398 42 1 1.1421 -0.8080 6.0103 43 1 2.4839 -1.6583 7.8276 44 1 2.5664 0.1153 7.9415 45 1 4.6063 -2.8507 7.3832 46 1 5.8313 -1.9414 6.4601 47 1 2.1751 -1.5525 2.1380 48 1 0.7427 -2.1962 1.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027436734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:04 Heat of formation + Delta-G solvation = 14.624140 kcal Electronic energy + Delta-G solvation = -30095.470555 eV Core-core repulsion = 26152.795544 eV Total energy + Delta-G solvation = -3942.675011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85711 -39.77049 -38.05263 -37.61320 -35.22921 -32.91196 -32.51983 -31.95513 -31.23459 -29.52971 -29.04818 -26.35540 -26.07466 -25.06363 -23.79530 -23.55397 -22.08403 -21.12456 -19.97067 -19.48539 -19.00415 -17.57488 -16.91358 -16.58217 -16.13799 -15.85509 -15.66175 -15.45200 -15.05146 -14.74247 -14.33920 -14.09689 -14.00222 -13.78630 -13.60773 -13.54509 -13.10419 -12.85231 -12.75638 -12.57231 -12.49687 -12.40442 -12.33313 -12.06023 -11.50289 -11.40913 -11.13706 -11.00219 -10.72406 -10.66028 -10.48807 -10.27507 -10.11044 -9.96087 -9.90718 -9.64116 -8.88498 -8.77218 -8.48971 -7.95431 -7.06265 -6.12919 -3.50739 1.49357 2.54597 2.87871 3.04310 3.20469 3.38518 3.41863 3.43955 3.75649 4.39756 4.48052 4.53742 4.75551 4.84255 4.95779 5.00380 5.03671 5.11594 5.13080 5.17240 5.23246 5.32634 5.35141 5.41550 5.43315 5.50023 5.60958 5.68550 5.70413 5.80017 5.84961 5.90379 5.97000 6.06498 6.10119 6.15979 6.22643 6.36618 6.51368 6.54097 6.63017 6.71219 6.72767 6.86565 7.05379 7.30931 7.43070 7.86886 8.17389 8.22477 8.81536 9.56679 9.92722 11.02353 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.004317 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.792214 B = 6483.891537 C = 8522.040817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.601 5.601 3 C -0.276 4.276 4 H 0.081 0.919 5 C 0.038 3.962 6 N -0.892 5.892 7 Si 0.878 3.122 8 H -0.287 1.287 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.078 0.922 13 C -0.138 4.138 14 C -0.131 4.131 15 C 0.114 3.886 16 N -0.608 5.608 17 C 0.594 3.406 18 O -0.540 6.540 19 C -0.054 4.054 20 C -0.089 4.089 21 C -0.225 4.225 22 C 0.058 3.942 23 N -0.522 5.522 24 H 0.424 0.576 25 C -0.091 4.091 26 C 0.071 3.929 27 O -0.379 6.379 28 C 0.138 3.862 29 C 0.073 3.927 30 H 0.015 0.985 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 -12.818 10.234 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.324 5.324 3 C -0.404 4.404 4 H 0.099 0.901 5 C -0.163 4.163 6 N -0.532 5.532 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.096 0.904 13 C -0.178 4.178 14 C -0.170 4.170 15 C -0.008 4.008 16 N -0.341 5.341 17 C 0.383 3.617 18 O -0.418 6.418 19 C -0.166 4.166 20 C -0.116 4.116 21 C -0.231 4.231 22 C -0.062 4.062 23 N -0.123 5.123 24 H 0.269 0.731 25 C -0.129 4.129 26 C -0.007 4.007 27 O -0.298 6.298 28 C 0.062 3.938 29 C -0.052 4.052 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.166 0.834 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.351 -12.987 10.053 16.479 hybrid contribution -1.445 0.095 -1.497 2.083 sum -2.796 -12.892 8.556 15.723 Atomic orbital electron populations 1.21356 0.84784 0.99337 0.98258 1.44103 1.00476 1.01409 1.86410 1.18769 1.07125 0.85677 1.28826 0.90121 1.25364 0.98114 0.95014 0.97806 1.69901 1.45971 0.97651 1.39717 0.86974 0.80120 0.77610 0.84420 1.21521 1.22955 1.19496 1.20697 0.97333 0.85634 0.90377 0.90416 1.22149 0.99497 0.95412 1.00692 1.21911 1.01290 0.96831 0.96973 1.21608 1.01127 0.94438 0.83589 1.48114 1.49443 1.18533 1.18009 1.17056 0.78732 0.84081 0.81785 1.90789 1.45083 1.24075 1.81803 1.20347 0.97139 1.00336 0.98758 1.20734 0.98746 1.00030 0.92065 1.19890 0.99033 1.03698 1.00503 1.20338 0.97215 1.00105 0.88543 1.42653 1.22323 1.30689 1.16658 0.73067 1.21064 0.99852 0.97269 0.94707 1.22527 0.81332 1.02365 0.94426 1.88025 1.20691 1.37813 1.83231 1.21013 0.97513 0.85928 0.89390 1.22979 0.97313 0.82228 1.02647 0.96716 0.93471 0.94892 0.92555 0.91218 0.92467 0.91397 0.91064 0.91719 0.89070 0.83427 0.88618 0.89596 0.92721 0.88023 0.92254 0.88050 0.89248 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.12 8.54 59.85 0.51 2.63 16 2 N -0.60 -13.02 2.43 -173.34 -0.42 -13.44 16 3 C -0.28 -7.29 9.83 -15.06 -0.15 -7.43 16 4 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 5 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 6 N -0.89 -26.24 13.97 55.49 0.78 -25.46 16 7 Si 0.88 21.25 25.12 -169.99 -4.27 16.98 16 8 H -0.29 -6.73 6.62 56.52 0.37 -6.35 16 9 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 11 C 0.17 3.05 2.75 -67.81 -0.19 2.87 16 12 H 0.08 1.57 7.89 -51.93 -0.41 1.16 16 13 C -0.14 -2.21 5.12 -26.69 -0.14 -2.34 16 14 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 15 C 0.11 1.51 6.43 -3.71 -0.02 1.48 16 16 N -0.61 -9.04 2.98 -174.08 -0.52 -9.56 16 17 C 0.59 9.72 7.64 -12.85 -0.10 9.62 16 18 O -0.54 -10.00 16.36 5.20 0.09 -9.92 16 19 C -0.05 -0.82 6.51 -81.74 -0.53 -1.35 16 20 C -0.09 -1.29 10.69 -39.35 -0.42 -1.71 16 21 C -0.22 -2.99 6.02 -105.00 -0.63 -3.62 16 22 C 0.06 0.76 7.14 -81.83 -0.58 0.17 16 23 N -0.52 -7.13 4.82 -5.43 -0.03 -7.15 16 24 H 0.42 5.34 6.00 -40.82 -0.24 5.10 16 25 C -0.09 -0.94 6.56 -27.41 -0.18 -1.12 16 26 C 0.07 0.66 6.78 37.44 0.25 0.91 16 27 O -0.38 -4.55 10.75 -35.23 -0.38 -4.92 16 28 C 0.14 1.52 7.25 36.07 0.26 1.78 16 29 C 0.07 1.11 4.73 -3.56 -0.02 1.10 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 1.04 3.02 -51.93 -0.16 0.88 16 32 H 0.03 0.56 6.45 -51.93 -0.34 0.23 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.87 6.72 -51.93 -0.35 0.52 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 40 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.09 1.40 3.94 -51.93 -0.20 1.20 16 48 H 0.07 0.93 7.51 -51.93 -0.39 0.54 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -31.92 367.06 -8.52 -40.44 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.11 Total: 5.45 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.19 Total: 2.05 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.19 Total: -55.61 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.29 Total: -14.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.27 Total: 16.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.92 -8.52 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027436734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.062 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds