Wall clock time and date at job start Tue Mar 31 2020 17:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00165 * 2 1 4 4 H 1.07993 * 119.99958 * 203.90233 * 3 2 1 5 5 C 1.38814 * 119.99872 * 23.90389 * 3 2 1 6 6 N 1.31627 * 119.99927 * 10.92394 * 5 3 2 7 7 Si 1.86799 * 120.00060 * 190.92642 * 5 3 2 8 8 H 1.48500 * 109.46934 * 59.99799 * 7 5 3 9 9 H 1.48494 * 109.46981 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46743 * 300.00025 * 7 5 3 11 11 C 1.46500 * 120.00009 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.50073 * 179.97438 * 11 2 1 13 13 C 1.53038 * 109.50059 * 300.00075 * 11 2 1 14 14 C 1.53036 * 109.54065 * 181.31382 * 13 11 2 15 15 C 1.53191 * 109.31624 * 298.63679 * 14 13 11 16 16 N 1.46928 * 108.77213 * 54.63163 * 15 14 13 17 17 C 1.34779 * 120.62817 * 126.37413 * 16 15 14 18 18 O 1.21689 * 120.00197 * 180.60646 * 17 16 15 19 19 C 1.46680 * 120.00072 * 0.60076 * 17 16 15 20 20 C 1.38158 * 126.19292 * 205.40880 * 19 17 16 21 21 C 1.38938 * 106.95027 * 179.97438 * 20 19 17 22 22 C 1.36277 * 108.02327 * 0.04356 * 21 20 19 23 23 N 1.34741 * 108.83667 * 359.68927 * 22 21 20 24 24 H 0.96998 * 125.71602 * 180.30981 * 23 22 21 25 25 C 1.51092 * 122.58248 * 179.88926 * 22 21 20 26 26 C 1.53542 * 107.71686 * 344.12017 * 25 22 21 27 27 O 1.42992 * 109.68369 * 48.03085 * 26 25 22 28 28 C 1.43424 * 114.33805 * 288.95972 * 27 26 25 29 29 C 1.46920 * 118.74242 * 306.39378 * 16 15 14 30 30 H 1.09000 * 109.47107 * 275.36524 * 1 2 3 31 31 H 1.08997 * 109.46963 * 35.36698 * 1 2 3 32 32 H 1.09001 * 109.46789 * 155.36110 * 1 2 3 33 33 H 0.96993 * 119.99757 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.46382 * 301.34485 * 13 11 2 35 35 H 1.09005 * 109.45802 * 61.29706 * 13 11 2 36 36 H 1.08996 * 109.49924 * 58.58993 * 14 13 11 37 37 H 1.09001 * 109.50033 * 178.68724 * 14 13 11 38 38 H 1.09002 * 109.58667 * 294.85037 * 15 14 13 39 39 H 1.08996 * 109.70735 * 174.49251 * 15 14 13 40 40 H 1.07997 * 126.52255 * 359.97225 * 20 19 17 41 41 H 1.08997 * 109.80767 * 103.67374 * 25 22 21 42 42 H 1.09001 * 109.81053 * 224.56320 * 25 22 21 43 43 H 1.08998 * 109.43538 * 168.09941 * 26 25 22 44 44 H 1.09006 * 109.43315 * 287.96627 * 26 25 22 45 45 H 1.08998 * 109.77725 * 291.10550 * 28 27 26 46 46 H 1.08999 * 109.75150 * 170.33193 * 28 27 26 47 47 H 1.09006 * 109.58537 * 293.82491 * 29 16 15 48 48 H 1.08995 * 109.70734 * 173.47126 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1602 1.2260 -0.3789 5 6 1.5450 2.3365 0.4871 6 7 0.4063 2.2546 1.1423 7 14 2.3471 4.0011 0.2128 8 1 2.4771 4.2536 -1.2448 9 1 1.5085 5.0618 0.8266 10 1 3.6936 4.0108 0.8389 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8283 -2.0712 1.2502 14 6 2.6176 -3.3822 1.2684 15 6 2.2497 -4.2123 0.0346 16 7 2.4654 -3.3946 -1.1669 17 6 3.2365 -3.8465 -2.1757 18 8 3.4164 -3.1552 -3.1608 19 6 3.8590 -5.1717 -2.0861 20 6 5.0087 -5.5785 -2.7353 21 6 5.2358 -6.8990 -2.3677 22 6 4.2413 -7.2765 -1.5158 23 7 3.4057 -6.2352 -1.3339 24 1 2.6163 -6.2344 -0.7703 25 6 4.1673 -8.6603 -0.9137 26 6 5.0992 -9.5728 -1.7239 27 8 6.3691 -8.9373 -1.8918 28 6 6.3559 -7.8175 -2.7878 29 6 1.8249 -2.0749 -1.2477 30 1 -0.3633 0.0961 1.0232 31 1 -0.3633 0.8380 -0.5948 32 1 -0.3633 -0.9341 -0.4284 33 1 -0.0164 3.0586 1.4824 34 1 2.0697 -1.4896 2.1399 35 1 0.7605 -2.2904 1.2387 36 1 3.6854 -3.1642 1.2550 37 1 2.3715 -3.9426 2.1704 38 1 1.2021 -4.5079 0.0921 39 1 2.8783 -5.1016 -0.0109 40 1 5.6154 -4.9834 -3.4017 41 1 4.4934 -8.6287 0.1259 42 1 3.1446 -9.0333 -0.9697 43 1 5.2328 -10.5163 -1.1949 44 1 4.6579 -9.7654 -2.7019 45 1 6.1863 -8.1631 -3.8076 46 1 7.3073 -7.2887 -2.7306 47 1 0.7426 -2.1962 -1.2946 48 1 2.1728 -1.5513 -2.1381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027436735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:07 Heat of formation + Delta-G solvation = 12.079910 kcal Electronic energy + Delta-G solvation = -29353.329397 eV Core-core repulsion = 25410.544060 eV Total energy + Delta-G solvation = -3942.785337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05152 -39.75309 -38.22985 -37.40284 -35.20727 -32.77127 -32.58793 -31.80808 -31.29454 -29.37412 -28.79413 -26.15881 -25.96021 -25.11461 -23.77920 -23.45126 -21.96715 -21.38481 -20.26314 -19.33094 -18.95831 -17.66762 -16.77481 -16.76182 -16.18587 -15.92114 -15.76782 -15.25412 -14.81886 -14.66707 -14.40266 -14.04501 -13.94333 -13.82796 -13.71419 -13.36123 -13.20760 -12.81635 -12.75971 -12.69072 -12.45539 -12.25759 -11.98002 -11.71388 -11.25121 -11.11717 -10.98238 -10.86686 -10.68747 -10.46394 -10.36195 -10.18631 -10.12589 -9.96436 -9.91940 -9.72773 -9.03130 -8.67109 -8.46362 -8.12528 -6.76751 -5.73250 -3.21660 1.37275 2.36165 2.70436 2.99118 3.37902 3.39945 3.44539 3.46879 3.54221 4.26894 4.40147 4.48000 4.52261 4.70386 4.78419 4.79857 4.94046 5.00015 5.11998 5.17004 5.19973 5.25797 5.37703 5.41948 5.45213 5.45767 5.56107 5.66095 5.74738 5.80963 5.89959 5.94193 6.07464 6.15658 6.31398 6.42532 6.50586 6.56615 6.67235 6.74039 6.83798 6.88876 6.94654 7.10216 7.35316 7.49881 7.71197 7.80505 8.23154 8.39420 9.22296 9.84036 10.32690 11.31005 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.002527 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.623339 B =11075.642233 C =11536.687999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.087 3.913 16 N -0.603 5.603 17 C 0.585 3.415 18 O -0.528 6.528 19 C -0.042 4.042 20 C -0.094 4.094 21 C -0.218 4.218 22 C 0.042 3.958 23 N -0.527 5.527 24 H 0.421 0.579 25 C -0.086 4.086 26 C 0.069 3.931 27 O -0.380 6.380 28 C 0.137 3.863 29 C 0.098 3.902 30 H 0.032 0.968 31 H 0.041 0.959 32 H -0.003 1.003 33 H 0.253 0.747 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -25.281 -2.475 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.084 0.916 13 C -0.171 4.171 14 C -0.169 4.169 15 C -0.037 4.037 16 N -0.336 5.336 17 C 0.373 3.627 18 O -0.404 6.404 19 C -0.154 4.154 20 C -0.120 4.120 21 C -0.225 4.225 22 C -0.076 4.076 23 N -0.129 5.129 24 H 0.266 0.734 25 C -0.125 4.125 26 C -0.008 4.008 27 O -0.299 6.299 28 C 0.060 3.940 29 C -0.026 4.026 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.167 0.833 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.392 -24.717 -2.747 25.447 hybrid contribution -0.481 1.162 0.278 1.288 sum 4.911 -23.555 -2.469 24.188 Atomic orbital electron populations 1.20807 0.82627 0.95283 0.99576 1.43864 1.01787 0.99964 1.85725 1.19189 0.98860 0.85575 1.34936 0.91442 1.25044 0.97759 0.98601 0.98044 1.70047 1.18661 1.27468 1.39145 0.86306 0.78521 0.83600 0.77946 1.20968 1.21636 1.20918 1.20579 0.96593 0.86301 0.90535 0.91588 1.22132 0.99299 0.94507 1.01208 1.21905 1.01421 0.97524 0.96037 1.22240 1.01039 0.94401 0.85992 1.48117 1.48990 1.19365 1.17102 1.17090 0.78341 0.84286 0.82997 1.90846 1.60994 1.57449 1.31145 1.20539 1.01378 0.89461 1.04046 1.20790 0.96045 0.94277 1.00856 1.19903 1.00529 0.96451 1.05626 1.20282 0.93606 0.91081 1.02646 1.42592 1.23537 1.10036 1.36725 0.73431 1.21010 1.01453 0.89310 1.00684 1.22527 0.84161 0.94870 0.99278 1.88020 1.29872 1.45483 1.66487 1.21054 0.96608 0.84360 0.91995 1.22479 0.96776 0.80915 1.02393 0.94931 0.93998 0.98411 0.93706 0.91247 0.92439 0.91522 0.91223 0.91214 0.90118 0.83279 0.89254 0.89663 0.88074 0.92535 0.92010 0.87904 0.91691 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 8.03 59.85 0.48 4.37 16 2 N -0.59 -14.64 2.81 -173.35 -0.49 -15.13 16 3 C -0.26 -7.07 9.58 -15.06 -0.14 -7.21 16 4 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 5 C 0.00 0.11 5.14 -17.43 -0.09 0.02 16 6 N -0.91 -26.28 10.65 55.49 0.59 -25.69 16 7 Si 0.91 22.09 29.57 -169.99 -5.03 17.06 16 8 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.17 3.44 2.74 -67.81 -0.19 3.25 16 12 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 13 C -0.13 -2.26 5.15 -26.69 -0.14 -2.39 16 14 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 15 C 0.09 1.01 5.57 -3.71 -0.02 0.98 16 16 N -0.60 -9.28 2.97 -174.31 -0.52 -9.80 16 17 C 0.58 9.68 7.64 -12.85 -0.10 9.58 16 18 O -0.53 -10.72 16.39 5.20 0.09 -10.63 16 19 C -0.04 -0.57 6.47 -81.74 -0.53 -1.09 16 20 C -0.09 -1.20 10.72 -39.35 -0.42 -1.63 16 21 C -0.22 -2.38 6.02 -105.01 -0.63 -3.01 16 22 C 0.04 0.41 7.14 -81.83 -0.58 -0.18 16 23 N -0.53 -5.33 4.79 -5.43 -0.03 -5.36 16 24 H 0.42 3.28 6.14 -40.82 -0.25 3.03 16 25 C -0.09 -0.54 6.56 -27.41 -0.18 -0.72 16 26 C 0.07 0.44 6.78 37.44 0.25 0.69 16 27 O -0.38 -3.50 10.74 -35.23 -0.38 -3.88 16 28 C 0.14 1.21 7.25 36.07 0.26 1.47 16 29 C 0.10 1.80 5.78 -3.71 -0.02 1.77 16 30 H 0.03 0.84 7.31 -51.93 -0.38 0.46 16 31 H 0.04 1.10 7.36 -51.93 -0.38 0.71 16 32 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.78 3.65 -51.94 -0.19 0.59 16 40 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.17 6.50 -51.93 -0.34 0.83 16 48 H 0.09 1.95 7.01 -51.93 -0.36 1.59 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -33.29 371.37 -9.61 -42.90 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.24 Total: 0.85 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.21 Total: 4.08 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.44 Total: -55.97 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.29 Total: -14.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.29 -9.61 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027436735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.983 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds