Wall clock time and date at job start Tue Mar 31 2020 17:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00165 * 2 1 4 4 H 1.07993 * 119.99958 * 203.90233 * 3 2 1 5 5 C 1.38814 * 119.99872 * 23.90389 * 3 2 1 6 6 N 1.31627 * 119.99927 * 10.92394 * 5 3 2 7 7 Si 1.86799 * 120.00060 * 190.92642 * 5 3 2 8 8 H 1.48500 * 109.46934 * 59.99799 * 7 5 3 9 9 H 1.48494 * 109.46981 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46743 * 300.00025 * 7 5 3 11 11 C 1.46500 * 120.00009 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.50073 * 179.97438 * 11 2 1 13 13 C 1.53038 * 109.50059 * 300.00075 * 11 2 1 14 14 C 1.53036 * 109.54065 * 181.31382 * 13 11 2 15 15 C 1.53191 * 109.31624 * 298.63679 * 14 13 11 16 16 N 1.46928 * 108.77213 * 54.63163 * 15 14 13 17 17 C 1.34779 * 120.62817 * 126.37413 * 16 15 14 18 18 O 1.21689 * 120.00197 * 180.60646 * 17 16 15 19 19 C 1.46680 * 120.00072 * 0.60076 * 17 16 15 20 20 C 1.38158 * 126.19292 * 205.40880 * 19 17 16 21 21 C 1.38938 * 106.95027 * 179.97438 * 20 19 17 22 22 C 1.36277 * 108.02327 * 0.04356 * 21 20 19 23 23 N 1.34741 * 108.83667 * 359.68927 * 22 21 20 24 24 H 0.96998 * 125.71602 * 180.30981 * 23 22 21 25 25 C 1.51092 * 122.58248 * 179.88926 * 22 21 20 26 26 C 1.53542 * 107.71686 * 344.12017 * 25 22 21 27 27 O 1.42992 * 109.68369 * 48.03085 * 26 25 22 28 28 C 1.43424 * 114.33805 * 288.95972 * 27 26 25 29 29 C 1.46920 * 118.74242 * 306.39378 * 16 15 14 30 30 H 1.09000 * 109.47107 * 275.36524 * 1 2 3 31 31 H 1.08997 * 109.46963 * 35.36698 * 1 2 3 32 32 H 1.09001 * 109.46789 * 155.36110 * 1 2 3 33 33 H 0.96993 * 119.99757 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.46382 * 301.34485 * 13 11 2 35 35 H 1.09005 * 109.45802 * 61.29706 * 13 11 2 36 36 H 1.08996 * 109.49924 * 58.58993 * 14 13 11 37 37 H 1.09001 * 109.50033 * 178.68724 * 14 13 11 38 38 H 1.09002 * 109.58667 * 294.85037 * 15 14 13 39 39 H 1.08996 * 109.70735 * 174.49251 * 15 14 13 40 40 H 1.07997 * 126.52255 * 359.97225 * 20 19 17 41 41 H 1.08997 * 109.80767 * 103.67374 * 25 22 21 42 42 H 1.09001 * 109.81053 * 224.56320 * 25 22 21 43 43 H 1.08998 * 109.43538 * 168.09941 * 26 25 22 44 44 H 1.09006 * 109.43315 * 287.96627 * 26 25 22 45 45 H 1.08998 * 109.77725 * 291.10550 * 28 27 26 46 46 H 1.08999 * 109.75150 * 170.33193 * 28 27 26 47 47 H 1.09006 * 109.58537 * 293.82491 * 29 16 15 48 48 H 1.08995 * 109.70734 * 173.47126 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1602 1.2260 -0.3789 5 6 1.5450 2.3365 0.4871 6 7 0.4063 2.2546 1.1423 7 14 2.3471 4.0011 0.2128 8 1 2.4771 4.2536 -1.2448 9 1 1.5085 5.0618 0.8266 10 1 3.6936 4.0108 0.8389 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8283 -2.0712 1.2502 14 6 2.6176 -3.3822 1.2684 15 6 2.2497 -4.2123 0.0346 16 7 2.4654 -3.3946 -1.1669 17 6 3.2365 -3.8465 -2.1757 18 8 3.4164 -3.1552 -3.1608 19 6 3.8590 -5.1717 -2.0861 20 6 5.0087 -5.5785 -2.7353 21 6 5.2358 -6.8990 -2.3677 22 6 4.2413 -7.2765 -1.5158 23 7 3.4057 -6.2352 -1.3339 24 1 2.6163 -6.2344 -0.7703 25 6 4.1673 -8.6603 -0.9137 26 6 5.0992 -9.5728 -1.7239 27 8 6.3691 -8.9373 -1.8918 28 6 6.3559 -7.8175 -2.7878 29 6 1.8249 -2.0749 -1.2477 30 1 -0.3633 0.0961 1.0232 31 1 -0.3633 0.8380 -0.5948 32 1 -0.3633 -0.9341 -0.4284 33 1 -0.0164 3.0586 1.4824 34 1 2.0697 -1.4896 2.1399 35 1 0.7605 -2.2904 1.2387 36 1 3.6854 -3.1642 1.2550 37 1 2.3715 -3.9426 2.1704 38 1 1.2021 -4.5079 0.0921 39 1 2.8783 -5.1016 -0.0109 40 1 5.6154 -4.9834 -3.4017 41 1 4.4934 -8.6287 0.1259 42 1 3.1446 -9.0333 -0.9697 43 1 5.2328 -10.5163 -1.1949 44 1 4.6579 -9.7654 -2.7019 45 1 6.1863 -8.1631 -3.8076 46 1 7.3073 -7.2887 -2.7306 47 1 0.7426 -2.1962 -1.2946 48 1 2.1728 -1.5513 -2.1381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027436735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:06 Heat of formation + Delta-G solvation = -9.617724 kcal Electronic energy + Delta-G solvation = -29354.270277 eV Core-core repulsion = 25410.544060 eV Total energy + Delta-G solvation = -3943.726217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.94063 -40.96236 -39.07079 -38.73611 -36.89543 -34.14276 -33.42835 -32.99415 -32.62183 -30.65518 -29.95128 -28.08737 -27.15959 -26.15356 -25.15257 -24.36340 -23.22320 -22.56643 -21.37831 -20.48086 -20.05924 -18.99054 -18.54174 -17.56450 -17.30183 -17.00384 -16.74025 -16.58563 -16.09265 -15.83851 -15.58884 -15.35241 -15.15765 -15.01046 -14.74817 -14.58598 -14.44013 -14.10797 -13.97757 -13.80851 -13.75835 -13.44526 -13.04163 -12.88107 -12.81710 -12.56420 -12.36866 -12.35750 -12.16969 -12.01863 -11.87164 -11.79208 -11.72895 -11.46665 -11.21576 -10.72733 -10.69915 -9.96994 -9.82297 -9.01522 -8.78066 -7.86417 -5.36879 0.36928 1.42483 1.45028 1.48813 1.51558 1.70026 1.90053 2.27491 2.47530 2.98947 3.25707 3.39438 3.52901 3.67471 3.88480 3.91189 3.91816 4.00207 4.04213 4.12383 4.20671 4.25873 4.38559 4.42098 4.55599 4.59480 4.67842 4.69139 4.72768 4.78411 4.83065 4.84187 4.89010 4.96977 5.03921 5.05590 5.13697 5.23619 5.31551 5.42126 5.42716 5.60342 5.67109 5.70372 5.76440 6.24973 6.25858 6.29661 6.38609 6.96931 7.11726 7.81958 8.24498 9.15162 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.002527 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.623339 B =11075.642233 C =11536.687999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.269 4.269 4 H 0.059 0.941 5 C -0.046 4.046 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.277 1.277 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.086 3.914 16 N -0.601 5.601 17 C 0.582 3.418 18 O -0.580 6.580 19 C -0.070 4.070 20 C -0.103 4.103 21 C -0.236 4.236 22 C 0.063 3.937 23 N -0.513 5.513 24 H 0.433 0.567 25 C -0.084 4.084 26 C 0.060 3.940 27 O -0.397 6.397 28 C 0.137 3.863 29 C 0.114 3.886 30 H 0.012 0.988 31 H 0.011 0.989 32 H 0.032 0.968 33 H 0.250 0.750 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -28.946 -1.358 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.332 5.332 3 C -0.400 4.400 4 H 0.077 0.923 5 C -0.241 4.241 6 N -0.579 5.579 7 Si 0.795 3.205 8 H -0.208 1.208 9 H -0.214 1.214 10 H -0.202 1.202 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.036 4.036 16 N -0.333 5.333 17 C 0.373 3.627 18 O -0.460 6.460 19 C -0.181 4.181 20 C -0.129 4.129 21 C -0.242 4.242 22 C -0.058 4.058 23 N -0.117 5.117 24 H 0.280 0.720 25 C -0.122 4.122 26 C -0.017 4.017 27 O -0.316 6.316 28 C 0.061 3.939 29 C -0.011 4.011 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.092 0.908 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.375 -28.436 -1.596 28.984 hybrid contribution -0.413 2.162 -0.089 2.203 sum 4.962 -26.275 -1.685 26.792 Atomic orbital electron populations 1.20532 0.82407 0.95737 0.97931 1.44049 1.02179 1.00824 1.86099 1.19417 0.98788 0.87229 1.34517 0.92279 1.25739 0.98505 1.01641 0.98262 1.70190 1.19723 1.27891 1.40071 0.85356 0.77813 0.79676 0.77678 1.20845 1.21442 1.20249 1.20687 0.94754 0.85458 0.93100 0.94061 1.21929 1.00378 0.95947 0.97822 1.21856 0.99982 0.95610 0.98474 1.22549 1.03516 0.94207 0.83337 1.48131 1.48434 1.18407 1.18346 1.17516 0.77742 0.85142 0.82343 1.90808 1.62811 1.59230 1.33186 1.19988 1.02330 0.89098 1.06732 1.20939 0.95988 0.95403 1.00600 1.20175 1.01848 0.95829 1.06320 1.20934 0.92027 0.92000 1.00798 1.42455 1.23901 1.09150 1.36157 0.71952 1.21223 1.03303 0.86709 1.00943 1.22818 0.83130 0.95608 1.00095 1.88005 1.31678 1.45360 1.66514 1.21086 0.96076 0.84221 0.92546 1.21992 0.97134 0.82260 0.99693 0.97012 0.96984 0.94949 0.94094 0.93702 0.91722 0.92558 0.87293 0.88170 0.87611 0.84152 0.87884 0.86704 0.85545 0.91994 0.90968 0.87669 0.90838 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 8.03 127.77 1.03 9.81 16 2 N -0.61 -31.07 2.81 -702.34 -1.98 -33.05 16 3 C -0.27 -15.40 9.58 84.03 0.81 -14.59 16 4 H 0.06 3.39 7.82 -2.91 -0.02 3.37 16 5 C -0.05 -2.63 5.14 84.86 0.44 -2.19 16 6 N -0.93 -55.35 10.65 21.65 0.23 -55.12 16 7 Si 0.97 46.44 29.57 68.60 2.03 48.47 16 8 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 C 0.17 6.98 2.74 45.07 0.12 7.10 16 12 H 0.04 1.89 7.87 -2.39 -0.02 1.87 16 13 C -0.12 -4.05 5.15 30.62 0.16 -3.89 16 14 C -0.12 -2.77 6.08 30.67 0.19 -2.58 16 15 C 0.09 1.71 5.57 86.36 0.48 2.19 16 16 N -0.60 -18.12 2.97 -823.62 -2.45 -20.56 16 17 C 0.58 19.51 7.64 86.45 0.66 20.17 16 18 O -0.58 -24.81 16.39 -4.31 -0.07 -24.88 16 19 C -0.07 -1.81 6.47 40.37 0.26 -1.55 16 20 C -0.10 -2.61 10.72 22.42 0.24 -2.37 16 21 C -0.24 -4.69 6.02 -20.11 -0.12 -4.82 16 22 C 0.06 0.99 7.14 41.78 0.30 1.29 16 23 N -0.51 -8.80 4.79 -171.09 -0.82 -9.61 16 24 H 0.43 4.89 6.14 -92.71 -0.57 4.32 16 25 C -0.08 -0.65 6.56 30.15 0.20 -0.45 16 26 C 0.06 0.52 6.78 72.16 0.49 1.01 16 27 O -0.40 -6.18 10.74 -148.98 -1.60 -7.78 16 28 C 0.14 2.18 7.25 71.28 0.52 2.70 16 29 C 0.11 4.25 5.78 86.36 0.50 4.75 16 30 H 0.01 0.62 7.31 -2.39 -0.02 0.60 16 31 H 0.01 0.62 7.36 -2.39 -0.02 0.61 16 32 H 0.03 1.33 6.35 -2.39 -0.02 1.32 16 33 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.07 7.72 -2.38 -0.02 2.05 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.61 3.65 -2.40 -0.01 1.60 16 40 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 0.48 8.09 -2.38 -0.02 0.46 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 2.61 6.50 -2.38 -0.02 2.59 16 48 H 0.06 2.61 7.01 -2.39 -0.02 2.59 16 Total: -1.00 -77.07 371.37 2.01 -75.05 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.41 Total: 10.92 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.26 Total: 16.57 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.01 Total: -118.35 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.67 Total: -32.66 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.07 2.01 -75.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027436735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.435 kcal (2) G-P(sol) polarization free energy of solvation -77.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds