Wall clock time and date at job start Tue Mar 31 2020 17:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99855 * 2 1 4 4 C 1.50697 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.38350 * 120.34913 * 90.00339 * 4 3 2 6 6 N 1.31925 * 121.08420 * 180.02562 * 5 4 3 7 7 C 1.31699 * 121.87869 * 359.97438 * 6 5 4 8 8 C 1.39529 * 120.56262 * 0.02562 * 7 6 5 9 9 C 1.47839 * 120.55611 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99928 * 145.22494 * 9 8 7 11 11 N 1.34782 * 119.99978 * 325.49888 * 9 8 7 12 12 C 1.46926 * 120.62861 * 353.65352 * 11 9 8 13 13 C 1.52766 * 109.00703 * 233.58210 * 12 11 9 14 14 C 1.53035 * 109.38524 * 305.58976 * 13 12 11 15 15 C 1.53045 * 109.53570 * 61.24069 * 14 13 12 16 16 H 1.08997 * 109.52907 * 58.60463 * 15 14 13 17 17 N 1.46500 * 109.49528 * 178.68598 * 15 14 13 18 18 C 1.46501 * 120.00509 * 59.83486 * 17 15 14 19 19 C 1.36942 * 120.00019 * 239.83777 * 17 15 14 20 20 H 1.07998 * 119.99926 * 23.78051 * 19 17 15 21 21 C 1.38813 * 120.00006 * 203.79235 * 19 17 15 22 22 N 1.31614 * 120.00076 * 11.06064 * 21 19 17 23 23 Si 1.86796 * 119.99740 * 191.06372 * 21 19 17 24 24 H 1.48503 * 109.47194 * 90.00048 * 23 21 19 25 25 H 1.48501 * 109.47258 * 209.99717 * 23 21 19 26 26 H 1.48501 * 109.47541 * 329.99937 * 23 21 19 27 27 C 1.46923 * 120.62999 * 173.93735 * 11 9 8 28 28 C 1.38359 * 120.34878 * 270.30506 * 4 3 2 29 29 H 1.09007 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46907 * 299.99352 * 1 2 3 31 31 H 1.08996 * 109.47454 * 59.99766 * 1 2 3 32 32 H 1.09002 * 109.46831 * 60.00323 * 3 2 1 33 33 H 1.09000 * 109.47165 * 300.00522 * 3 2 1 34 34 H 1.08001 * 119.46262 * 0.04639 * 5 4 3 35 35 H 1.07994 * 119.71876 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.59012 * 353.41627 * 12 11 9 37 37 H 1.08997 * 109.58323 * 113.84592 * 12 11 9 38 38 H 1.08999 * 109.56591 * 185.55134 * 13 12 11 39 39 H 1.09004 * 109.38615 * 65.51612 * 13 12 11 40 40 H 1.08996 * 109.46102 * 301.22351 * 14 13 12 41 41 H 1.09000 * 109.46180 * 181.25959 * 14 13 12 42 42 H 1.09002 * 109.47104 * 95.18240 * 18 17 15 43 43 H 1.08997 * 109.47569 * 215.18261 * 18 17 15 44 44 H 1.09000 * 109.46917 * 335.18751 * 18 17 15 45 45 H 0.96999 * 119.99923 * 180.02562 * 22 21 19 46 46 H 1.09008 * 109.58057 * 246.15494 * 27 11 9 47 47 H 1.08998 * 109.58683 * 6.57605 * 27 11 9 48 48 H 1.07996 * 120.85514 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2088 1.1316 -1.1948 6 7 5.5238 1.0270 -1.2123 7 6 6.2319 0.9707 -0.1033 8 6 5.6047 1.0200 1.1421 9 6 6.3997 0.9574 2.3870 10 8 6.0479 1.5873 3.3652 11 7 7.5177 0.2061 2.4355 12 6 7.8846 -0.6636 1.3096 13 6 8.1028 -2.0838 1.8284 14 6 9.1290 -2.0578 2.9634 15 6 8.5989 -1.1978 4.1131 16 1 7.6503 -1.6037 4.4643 17 7 9.5680 -1.1991 5.2117 18 6 10.9273 -0.6995 4.9902 19 6 9.2034 -1.6674 6.4459 20 1 8.3857 -2.3667 6.5381 21 6 9.8848 -1.2429 7.5783 22 7 10.7287 -0.2360 7.4999 23 14 9.6039 -2.1010 9.2136 24 1 10.5681 -3.2214 9.3568 25 1 9.8027 -1.1323 10.3215 26 1 8.2178 -2.6315 9.2627 27 6 8.3893 0.2366 3.6179 28 6 4.2094 1.1248 1.1930 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.6672 1.1755 -2.1281 35 1 7.3070 0.8855 -0.1583 36 1 7.0820 -0.6648 0.5721 37 1 8.8041 -0.2997 0.8514 38 1 8.4706 -2.7154 1.0198 39 1 7.1588 -2.4821 2.2005 40 1 10.0653 -1.6369 2.5969 41 1 9.3024 -3.0733 3.3196 42 1 10.9835 0.3466 5.2913 43 1 11.6308 -1.2859 5.5811 44 1 11.1789 -0.7873 3.9333 45 1 11.2051 0.0603 8.2912 46 1 9.3509 0.6755 3.3516 47 1 7.9196 0.8292 4.4029 48 1 3.6908 1.1611 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027446758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:12 Heat of formation + Delta-G solvation = -26.874031 kcal Electronic energy + Delta-G solvation = -28978.587094 eV Core-core repulsion = 25034.112588 eV Total energy + Delta-G solvation = -3944.474506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08038 -40.62019 -38.94499 -38.67265 -36.88107 -34.33570 -34.06005 -33.01885 -32.88751 -30.44517 -28.44362 -28.05504 -27.10297 -26.46995 -25.56882 -24.60868 -23.69763 -22.98383 -21.27295 -20.17370 -18.88732 -18.60984 -18.08385 -17.74664 -17.37738 -17.13695 -16.94734 -16.35724 -16.24024 -15.98647 -15.76469 -15.37267 -15.10779 -14.96729 -14.72219 -14.46484 -14.24529 -14.11896 -13.98372 -13.79138 -13.54146 -13.33422 -12.92986 -12.92232 -12.81581 -12.47692 -12.37626 -12.22121 -12.14667 -12.11491 -11.79834 -11.70938 -11.41209 -11.31319 -11.02139 -10.72347 -10.66950 -10.50129 -10.14934 -9.76964 -8.77323 -7.85023 -5.35473 -0.42607 -0.01198 1.43359 1.44388 1.53387 1.57088 1.81794 2.48256 2.50369 3.01131 3.21317 3.27989 3.43413 3.57757 3.69122 3.71896 3.82418 3.92895 3.98413 4.03451 4.07189 4.20435 4.31649 4.34319 4.49667 4.53781 4.55526 4.57304 4.62701 4.65158 4.75117 4.84043 4.87099 4.90631 4.93539 5.00552 5.04691 5.13147 5.26551 5.39102 5.39756 5.45064 5.53778 5.61607 5.72699 6.16974 6.28999 6.31528 6.71252 6.96936 7.13296 7.84307 8.26739 9.16860 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.002685 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.414412 B =10424.399529 C =11206.967278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.107 3.893 4 C -0.148 4.148 5 C 0.145 3.855 6 N -0.494 5.494 7 C 0.140 3.860 8 C -0.192 4.192 9 C 0.555 3.445 10 O -0.585 6.585 11 N -0.595 5.595 12 C 0.090 3.910 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.167 3.833 16 H 0.040 0.960 17 N -0.608 5.608 18 C 0.178 3.822 19 C -0.266 4.266 20 H 0.064 0.936 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.272 1.272 27 C 0.114 3.886 28 C -0.014 4.014 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.002 0.998 43 H 0.015 0.985 44 H 0.039 0.961 45 H 0.249 0.751 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 0.706 -23.898 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.030 3.970 4 C -0.150 4.150 5 C -0.012 4.012 6 N -0.202 5.202 7 C -0.017 4.017 8 C -0.197 4.197 9 C 0.344 3.656 10 O -0.466 6.466 11 N -0.327 5.327 12 C -0.031 4.031 13 C -0.162 4.162 14 C -0.161 4.161 15 C 0.059 3.941 16 H 0.059 0.941 17 N -0.331 5.331 18 C 0.033 3.967 19 C -0.396 4.396 20 H 0.082 0.918 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.208 1.208 25 H -0.221 1.221 26 H -0.197 1.197 27 C -0.010 4.010 28 C -0.040 4.040 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.212 0.788 35 H 0.203 0.797 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.034 0.966 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.191 0.886 -24.057 28.465 hybrid contribution -0.447 0.161 2.770 2.810 sum -15.638 1.048 -21.287 26.435 Atomic orbital electron populations 1.22950 0.79015 1.03845 1.01272 1.87930 1.21727 1.27908 1.95707 1.21341 0.87031 0.85330 1.03288 1.20757 0.97148 1.03742 0.93364 1.23449 0.89633 0.89525 0.98563 1.67923 1.08592 1.13526 1.30124 1.23533 1.01711 0.90743 0.85725 1.20793 0.95183 1.09371 0.94392 1.18627 0.80499 0.79026 0.87488 1.90776 1.70412 1.47059 1.38363 1.48196 1.23021 1.42576 1.18867 1.22473 1.02980 0.89890 0.87724 1.21822 0.99133 0.96440 0.98760 1.21927 0.99277 0.99844 0.95061 1.20776 0.92010 0.92718 0.88604 0.94126 1.44143 1.08029 1.73645 1.07267 1.20527 0.84581 0.96465 0.95093 1.19507 1.16238 1.19264 0.84618 0.91778 1.25828 1.00175 0.97669 1.00981 1.70219 1.31510 1.27601 1.28879 0.85237 0.78088 0.77511 0.79430 1.20763 1.22111 1.19737 1.22082 0.92877 0.99616 0.86443 1.21673 0.92279 0.90451 0.99627 0.88926 0.93402 0.92012 0.91525 0.88726 0.78823 0.79659 0.87500 0.88042 0.87029 0.92612 0.91125 0.92400 0.98015 0.96592 0.94263 0.94208 0.91255 0.93495 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.81 10.69 -148.98 -1.59 -8.41 16 3 C 0.11 1.38 6.08 71.23 0.43 1.81 16 4 C -0.15 -2.60 5.52 -19.81 -0.11 -2.71 16 5 C 0.14 2.25 10.85 84.71 0.92 3.17 16 6 N -0.49 -9.34 10.35 -194.75 -2.01 -11.35 16 7 C 0.14 2.83 8.56 85.02 0.73 3.56 16 8 C -0.19 -4.93 5.31 -19.99 -0.11 -5.04 16 9 C 0.55 18.84 7.40 86.78 0.64 19.49 16 10 O -0.59 -25.64 16.30 -3.88 -0.06 -25.71 16 11 N -0.60 -18.62 2.98 -823.15 -2.45 -21.07 16 12 C 0.09 1.90 4.74 86.22 0.41 2.31 16 13 C -0.12 -2.74 6.06 30.53 0.19 -2.56 16 14 C -0.12 -3.77 5.13 30.62 0.16 -3.61 16 15 C 0.17 6.91 2.74 45.07 0.12 7.04 16 16 H 0.04 1.85 7.87 -2.39 -0.02 1.83 16 17 N -0.61 -30.99 2.81 -702.34 -1.98 -32.96 16 18 C 0.18 8.76 7.91 127.77 1.01 9.77 16 19 C -0.27 -15.15 9.58 84.03 0.81 -14.34 16 20 H 0.06 3.61 7.82 -2.91 -0.02 3.59 16 21 C -0.05 -2.96 5.14 84.86 0.44 -2.52 16 22 N -0.94 -56.76 10.65 21.65 0.23 -56.53 16 23 Si 0.97 46.64 29.57 68.60 2.03 48.67 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 27 C 0.11 4.55 5.80 86.36 0.50 5.05 16 28 C -0.01 -0.33 9.44 22.73 0.21 -0.11 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 33 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 34 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.19 2.98 5.99 -2.91 -0.02 2.97 16 36 H 0.11 1.88 4.46 -2.39 -0.01 1.87 16 37 H 0.10 1.65 8.05 -2.39 -0.02 1.63 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 2.06 6.71 -2.39 -0.02 2.04 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.00 0.08 7.32 -2.39 -0.02 0.07 16 43 H 0.02 0.83 7.35 -2.39 -0.02 0.81 16 44 H 0.04 1.58 6.45 -2.39 -0.02 1.57 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.07 2.67 7.52 -2.38 -0.02 2.65 16 47 H 0.05 2.29 7.00 -2.39 -0.02 2.28 16 48 H 0.13 3.36 8.05 -2.91 -0.02 3.33 16 Total: -1.00 -77.22 381.94 2.72 -74.50 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.96 Total: 10.06 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 7.60 Total: 22.79 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.21 Total: -121.91 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.66 Total: -34.11 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -77.22 2.72 -74.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027446758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.631 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds