Wall clock time and date at job start Tue Mar 31 2020 17:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99791 * 2 1 4 4 C 1.39133 * 120.47989 * 0.20636 * 3 2 1 5 5 C 1.38538 * 118.37862 * 180.26265 * 4 3 2 6 6 C 1.38256 * 119.21840 * 359.75789 * 5 4 3 7 7 N 1.31844 * 120.88722 * 0.02562 * 6 5 4 8 8 C 1.31845 * 121.78136 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.65583 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47327 * 90.00001 * 9 8 7 11 11 O 1.21278 * 119.99857 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.63332 * 359.97438 * 12 10 9 14 14 C 1.53187 * 108.77751 * 233.61058 * 13 12 10 15 15 C 1.53036 * 109.31159 * 305.36533 * 14 13 12 16 16 C 1.53031 * 109.54066 * 61.36455 * 15 14 13 17 17 H 1.08999 * 109.50285 * 58.61783 * 16 15 14 18 18 N 1.46510 * 109.50182 * 178.68660 * 16 15 14 19 19 C 1.46494 * 120.00028 * 59.92751 * 18 16 15 20 20 C 1.36935 * 119.99830 * 239.93907 * 18 16 15 21 21 H 1.08004 * 120.00233 * 334.65526 * 20 18 16 22 22 C 1.38815 * 120.00074 * 154.65796 * 20 18 16 23 23 N 1.31622 * 119.99508 * 4.07148 * 22 20 18 24 24 Si 1.86797 * 120.00036 * 184.06863 * 22 20 18 25 25 H 1.48506 * 109.47095 * 90.00165 * 24 22 20 26 26 H 1.48502 * 109.47024 * 209.99822 * 24 22 20 27 27 H 1.48499 * 109.47257 * 330.00226 * 24 22 20 28 28 C 1.46931 * 120.60403 * 180.02562 * 12 10 9 29 29 H 1.08999 * 109.47101 * 59.99804 * 1 2 3 30 30 H 1.08995 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46787 * 299.99962 * 1 2 3 32 32 H 1.08001 * 120.81108 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.39146 * 179.77233 * 5 4 3 34 34 H 1.07998 * 119.55176 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47435 * 329.99962 * 9 8 7 36 36 H 1.09008 * 109.46883 * 209.99445 * 9 8 7 37 37 H 1.09001 * 109.58744 * 113.81636 * 13 12 10 38 38 H 1.09004 * 109.58412 * 353.39361 * 13 12 10 39 39 H 1.08997 * 109.50034 * 185.40893 * 14 13 12 40 40 H 1.09005 * 109.49933 * 65.31312 * 14 13 12 41 41 H 1.09005 * 109.46145 * 301.34272 * 15 14 13 42 42 H 1.09001 * 109.46377 * 181.38529 * 15 14 13 43 43 H 1.08995 * 109.47707 * 264.49607 * 19 18 16 44 44 H 1.09006 * 109.47081 * 24.49357 * 19 18 16 45 45 H 1.09003 * 109.47259 * 144.48748 * 19 18 16 46 46 H 0.97005 * 119.99235 * 180.02562 * 23 22 20 47 47 H 1.09007 * 109.61869 * 6.61673 * 28 12 10 48 48 H 1.09006 * 109.56140 * 246.19487 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 0.0043 5 6 1.9717 3.5946 -0.0015 6 6 3.3543 3.5975 -0.0061 7 7 4.0334 2.4675 -0.0057 8 6 3.4306 1.2950 -0.0003 9 6 4.2542 0.0330 -0.0006 10 6 4.5348 -0.3842 1.4201 11 8 4.1082 0.2783 2.3421 12 7 5.2596 -1.4935 1.6661 13 6 5.7826 -2.3066 0.5597 14 6 5.3366 -3.7582 0.7609 15 6 5.7702 -4.2331 2.1496 16 6 5.0985 -3.3688 3.2190 17 1 4.0157 -3.4349 3.1130 18 7 5.4895 -3.8439 4.5486 19 6 6.9021 -3.8542 4.9366 20 6 4.5346 -4.2787 5.4285 21 1 3.5203 -3.9166 5.3471 22 6 4.8702 -5.1846 6.4253 23 7 6.1215 -5.5644 6.5752 24 14 3.5461 -5.8647 7.5538 25 1 2.9803 -7.1039 6.9626 26 1 4.1374 -6.1743 8.8803 27 1 2.4678 -4.8565 7.7155 28 6 5.5406 -1.9128 3.0460 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2185 2.3518 0.0081 33 1 1.4234 4.5251 -0.0020 34 1 3.8849 4.5381 -0.0111 35 1 5.1959 0.2139 -0.5188 36 1 3.7053 -0.7590 -0.5102 37 1 6.8714 -2.2565 0.5523 38 1 5.3911 -1.9318 -0.3860 39 1 5.7969 -4.3890 0.0005 40 1 4.2515 -3.8203 0.6777 41 1 6.8531 -4.1475 2.2410 42 1 5.4757 -5.2737 2.2861 43 1 7.3220 -4.8433 4.7539 44 1 7.4458 -3.1145 4.3487 45 1 6.9898 -3.6121 5.9958 46 1 6.3559 -6.1978 7.2715 47 1 4.9895 -1.2787 3.7406 48 1 6.6096 -1.8300 3.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027544653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:29 Heat of formation + Delta-G solvation = -4.713267 kcal Electronic energy + Delta-G solvation = -29427.974433 eV Core-core repulsion = 25484.460890 eV Total energy + Delta-G solvation = -3943.513544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.00355 -39.68659 -38.29750 -37.30861 -35.01521 -33.32017 -32.24994 -31.58604 -31.22655 -29.21112 -28.01897 -27.59720 -25.96429 -24.90110 -23.54110 -23.06360 -22.46369 -21.55162 -19.56550 -18.52162 -18.24723 -17.32813 -17.10031 -16.68656 -16.39879 -15.97743 -15.37960 -15.14886 -14.76643 -14.55131 -14.13324 -14.00650 -13.93889 -13.64349 -13.51681 -13.41530 -12.94747 -12.70424 -12.58218 -12.46146 -12.23874 -11.90059 -11.83660 -11.67271 -11.59483 -11.01698 -10.91282 -10.75890 -10.58374 -10.31972 -10.21285 -10.07503 -9.97428 -9.85087 -9.74116 -9.72054 -9.44374 -8.51269 -8.47945 -8.25247 -6.68324 -5.68936 -3.15745 0.92605 1.11075 2.92728 2.97286 3.21862 3.40989 3.47058 3.48921 3.68361 4.12494 4.40919 4.50754 4.52516 4.75110 4.78477 4.87490 4.92386 5.01803 5.06766 5.20776 5.22692 5.24160 5.34341 5.38459 5.49768 5.56756 5.64246 5.69857 5.80817 5.85538 5.89367 5.94635 6.07860 6.23362 6.25200 6.30772 6.46431 6.58579 6.75379 6.89850 6.98409 7.01845 7.07275 7.54720 7.73901 7.81888 7.84939 7.90091 8.45179 8.50947 9.30384 9.91080 10.40545 11.35386 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.002978 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.751973 B = 9400.067337 C =10047.371607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.062 3.938 7 N -0.439 5.439 8 C 0.129 3.871 9 C -0.085 4.085 10 C 0.523 3.477 11 O -0.538 6.538 12 N -0.606 5.606 13 C 0.108 3.892 14 C -0.132 4.132 15 C -0.131 4.131 16 C 0.170 3.830 17 H 0.063 0.937 18 N -0.596 5.596 19 C 0.166 3.834 20 C -0.253 4.253 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.910 5.910 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.098 3.902 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.025 0.975 44 H -0.008 1.008 45 H 0.052 0.948 46 H 0.252 0.748 47 H 0.088 0.912 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 13.158 -19.755 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.095 4.095 7 N -0.148 5.148 8 C -0.011 4.011 9 C -0.125 4.125 10 C 0.310 3.690 11 O -0.415 6.415 12 N -0.340 5.340 13 C -0.016 4.016 14 C -0.171 4.171 15 C -0.171 4.171 16 C 0.061 3.939 17 H 0.082 0.918 18 N -0.319 5.319 19 C 0.021 3.979 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.026 4.026 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.216 13.221 -19.078 24.030 hybrid contribution -1.835 -0.365 0.694 1.995 sum -8.050 12.856 -18.385 23.835 Atomic orbital electron populations 1.23119 0.78113 1.04489 1.01213 1.86124 1.21559 1.25815 1.88135 1.19842 0.93088 0.85263 0.97276 1.21648 1.00698 0.92139 1.04737 1.21955 0.95766 0.98155 0.99680 1.22579 0.91432 0.96276 0.99215 1.67443 1.40024 0.97506 1.09831 1.19969 0.87771 0.93413 0.99950 1.20484 1.01331 0.94294 0.96426 1.20180 0.77977 0.80420 0.90470 1.90696 1.51372 1.53216 1.46237 1.48145 1.52858 1.24929 1.08064 1.21759 0.98971 0.91647 0.89180 1.21934 1.01549 0.94912 0.98724 1.22102 1.00731 1.00972 0.93307 1.20566 0.97675 0.89869 0.85798 0.91830 1.43883 1.03827 1.74614 1.09534 1.20862 0.82743 0.96247 0.97999 1.19244 0.91350 1.18967 1.08676 0.91444 1.25130 0.96362 0.97729 1.00032 1.70095 1.15435 1.35445 1.34538 0.86255 0.81263 0.79248 0.79841 1.21433 1.21714 1.20541 1.22393 1.00888 0.98465 0.80818 0.92700 0.87763 0.92460 0.84357 0.84587 0.82491 0.87229 0.87062 0.91398 0.90334 0.91310 0.91730 0.92454 0.91610 0.95644 0.98928 0.92957 0.93799 0.89398 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.83 101.05 0.99 1.20 16 2 O -0.30 -3.68 9.54 -19.45 -0.19 -3.86 16 3 C 0.09 1.19 6.67 -39.07 -0.26 0.93 16 4 C -0.17 -1.70 9.14 -39.14 -0.36 -2.05 16 5 C -0.14 -1.27 10.11 -39.46 -0.40 -1.67 16 6 C 0.06 0.68 11.18 -17.54 -0.20 0.48 16 7 N -0.44 -6.12 10.27 -9.35 -0.10 -6.21 16 8 C 0.13 1.81 5.29 -82.41 -0.44 1.37 16 9 C -0.08 -1.09 4.13 -29.04 -0.12 -1.21 16 10 C 0.52 8.85 7.69 -10.98 -0.08 8.76 16 11 O -0.54 -11.45 15.45 5.56 0.09 -11.36 16 12 N -0.61 -9.77 2.97 -172.79 -0.51 -10.28 16 13 C 0.11 1.31 6.34 -3.72 -0.02 1.28 16 14 C -0.13 -1.73 6.08 -26.62 -0.16 -1.89 16 15 C -0.13 -2.32 5.15 -26.70 -0.14 -2.45 16 16 C 0.17 3.57 2.73 -67.84 -0.19 3.38 16 17 H 0.06 1.41 7.88 -51.93 -0.41 1.00 16 18 N -0.60 -15.18 2.82 -173.38 -0.49 -15.67 16 19 C 0.17 4.15 7.99 59.84 0.48 4.63 16 20 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 21 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 22 C 0.01 0.15 5.38 -17.43 -0.09 0.05 16 23 N -0.91 -26.64 10.12 55.49 0.56 -26.08 16 24 Si 0.90 22.23 29.56 -169.99 -5.02 17.21 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.10 1.91 5.78 -3.73 -0.02 1.89 16 29 H 0.05 0.31 7.71 -51.93 -0.40 -0.09 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.43 7.69 -51.93 -0.40 0.03 16 32 H 0.14 1.02 6.45 -52.49 -0.34 0.68 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.11 1.18 7.94 -51.93 -0.41 0.77 16 36 H 0.11 1.21 7.06 -51.92 -0.37 0.84 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.03 0.68 7.44 -51.93 -0.39 0.29 16 44 H -0.01 -0.17 6.36 -51.93 -0.33 -0.50 16 45 H 0.05 1.43 7.03 -51.93 -0.37 1.07 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.09 1.97 7.01 -51.92 -0.36 1.60 16 48 H 0.06 1.22 6.50 -51.93 -0.34 0.88 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -35.17 380.80 -8.39 -43.57 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.32 Total: -0.50 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.15 Total: 7.45 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.54 Total: -58.24 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.10 Total: -15.23 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.17 -8.39 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.855 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds