Wall clock time and date at job start Tue Mar 31 2020 17:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99791 * 2 1 4 4 C 1.39133 * 120.47989 * 0.20636 * 3 2 1 5 5 C 1.38538 * 118.37862 * 180.26265 * 4 3 2 6 6 C 1.38256 * 119.21840 * 359.75789 * 5 4 3 7 7 N 1.31844 * 120.88722 * 0.02562 * 6 5 4 8 8 C 1.31845 * 121.78136 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.65583 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47327 * 90.00001 * 9 8 7 11 11 O 1.21278 * 119.99857 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.63332 * 359.97438 * 12 10 9 14 14 C 1.53187 * 108.77751 * 233.61058 * 13 12 10 15 15 C 1.53036 * 109.31159 * 305.36533 * 14 13 12 16 16 C 1.53031 * 109.54066 * 61.36455 * 15 14 13 17 17 H 1.08999 * 109.50285 * 58.61783 * 16 15 14 18 18 N 1.46510 * 109.50182 * 178.68660 * 16 15 14 19 19 C 1.46494 * 120.00028 * 59.92751 * 18 16 15 20 20 C 1.36935 * 119.99830 * 239.93907 * 18 16 15 21 21 H 1.08004 * 120.00233 * 334.65526 * 20 18 16 22 22 C 1.38815 * 120.00074 * 154.65796 * 20 18 16 23 23 N 1.31622 * 119.99508 * 4.07148 * 22 20 18 24 24 Si 1.86797 * 120.00036 * 184.06863 * 22 20 18 25 25 H 1.48506 * 109.47095 * 90.00165 * 24 22 20 26 26 H 1.48502 * 109.47024 * 209.99822 * 24 22 20 27 27 H 1.48499 * 109.47257 * 330.00226 * 24 22 20 28 28 C 1.46931 * 120.60403 * 180.02562 * 12 10 9 29 29 H 1.08999 * 109.47101 * 59.99804 * 1 2 3 30 30 H 1.08995 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46787 * 299.99962 * 1 2 3 32 32 H 1.08001 * 120.81108 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.39146 * 179.77233 * 5 4 3 34 34 H 1.07998 * 119.55176 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47435 * 329.99962 * 9 8 7 36 36 H 1.09008 * 109.46883 * 209.99445 * 9 8 7 37 37 H 1.09001 * 109.58744 * 113.81636 * 13 12 10 38 38 H 1.09004 * 109.58412 * 353.39361 * 13 12 10 39 39 H 1.08997 * 109.50034 * 185.40893 * 14 13 12 40 40 H 1.09005 * 109.49933 * 65.31312 * 14 13 12 41 41 H 1.09005 * 109.46145 * 301.34272 * 15 14 13 42 42 H 1.09001 * 109.46377 * 181.38529 * 15 14 13 43 43 H 1.08995 * 109.47707 * 264.49607 * 19 18 16 44 44 H 1.09006 * 109.47081 * 24.49357 * 19 18 16 45 45 H 1.09003 * 109.47259 * 144.48748 * 19 18 16 46 46 H 0.97005 * 119.99235 * 180.02562 * 23 22 20 47 47 H 1.09007 * 109.61869 * 6.61673 * 28 12 10 48 48 H 1.09006 * 109.56140 * 246.19487 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 0.0043 5 6 1.9717 3.5946 -0.0015 6 6 3.3543 3.5975 -0.0061 7 7 4.0334 2.4675 -0.0057 8 6 3.4306 1.2950 -0.0003 9 6 4.2542 0.0330 -0.0006 10 6 4.5348 -0.3842 1.4201 11 8 4.1082 0.2783 2.3421 12 7 5.2596 -1.4935 1.6661 13 6 5.7826 -2.3066 0.5597 14 6 5.3366 -3.7582 0.7609 15 6 5.7702 -4.2331 2.1496 16 6 5.0985 -3.3688 3.2190 17 1 4.0157 -3.4349 3.1130 18 7 5.4895 -3.8439 4.5486 19 6 6.9021 -3.8542 4.9366 20 6 4.5346 -4.2787 5.4285 21 1 3.5203 -3.9166 5.3471 22 6 4.8702 -5.1846 6.4253 23 7 6.1215 -5.5644 6.5752 24 14 3.5461 -5.8647 7.5538 25 1 2.9803 -7.1039 6.9626 26 1 4.1374 -6.1743 8.8803 27 1 2.4678 -4.8565 7.7155 28 6 5.5406 -1.9128 3.0460 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2185 2.3518 0.0081 33 1 1.4234 4.5251 -0.0020 34 1 3.8849 4.5381 -0.0111 35 1 5.1959 0.2139 -0.5188 36 1 3.7053 -0.7590 -0.5102 37 1 6.8714 -2.2565 0.5523 38 1 5.3911 -1.9318 -0.3860 39 1 5.7969 -4.3890 0.0005 40 1 4.2515 -3.8203 0.6777 41 1 6.8531 -4.1475 2.2410 42 1 5.4757 -5.2737 2.2861 43 1 7.3220 -4.8433 4.7539 44 1 7.4458 -3.1145 4.3487 45 1 6.9898 -3.6121 5.9958 46 1 6.3559 -6.1978 7.2715 47 1 4.9895 -1.2787 3.7406 48 1 6.6096 -1.8300 3.2420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027544653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:28 Heat of formation + Delta-G solvation = -28.216939 kcal Electronic energy + Delta-G solvation = -29428.993629 eV Core-core repulsion = 25484.460890 eV Total energy + Delta-G solvation = -3944.532739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89286 -40.95056 -39.12214 -38.81022 -36.75727 -34.35312 -33.78733 -32.84442 -32.43086 -30.70213 -29.13242 -28.30699 -28.07671 -26.18975 -25.25339 -23.84201 -23.46248 -23.01437 -21.07698 -19.87947 -19.04607 -18.81233 -18.27408 -18.15001 -17.35714 -17.08626 -16.74771 -16.39159 -16.25909 -15.66444 -15.39556 -15.25968 -15.18613 -14.85425 -14.74518 -14.47610 -14.28918 -14.15384 -13.95068 -13.70564 -13.60001 -13.19929 -12.92290 -12.89990 -12.73576 -12.53339 -12.35627 -12.32114 -12.24411 -12.10510 -11.93182 -11.77864 -11.67535 -11.38178 -10.96926 -10.65411 -10.59302 -10.56321 -9.69096 -9.32455 -8.73368 -7.85649 -5.34651 0.10679 0.30731 1.43320 1.44234 1.53428 1.65276 1.99108 2.25241 2.48449 2.80499 3.27392 3.29105 3.63128 3.64326 3.68707 3.82932 4.01349 4.07150 4.11527 4.16630 4.22302 4.29253 4.33546 4.35542 4.38549 4.47105 4.49517 4.61301 4.69525 4.73836 4.79988 4.80805 4.90968 4.94078 5.05270 5.07030 5.12194 5.17568 5.34207 5.45905 5.51286 5.51637 5.55321 5.63710 5.77056 6.23056 6.32857 6.48314 7.01378 7.14595 7.20228 7.85274 8.28699 9.16898 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.002978 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.751973 B = 9400.067337 C =10047.371607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.076 3.924 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.468 5.468 8 C 0.094 3.906 9 C -0.073 4.073 10 C 0.517 3.483 11 O -0.591 6.591 12 N -0.605 5.605 13 C 0.103 3.897 14 C -0.122 4.122 15 C -0.122 4.122 16 C 0.170 3.830 17 H 0.043 0.957 18 N -0.614 5.614 19 C 0.185 3.815 20 C -0.269 4.269 21 H 0.060 0.940 22 C -0.046 4.046 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.114 3.886 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.005 0.995 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.249 0.751 47 H 0.049 0.951 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 13.982 -22.465 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.028 3.972 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.178 5.178 8 C -0.046 4.046 9 C -0.113 4.113 10 C 0.307 3.693 11 O -0.472 6.472 12 N -0.338 5.338 13 C -0.018 4.018 14 C -0.161 4.161 15 C -0.161 4.161 16 C 0.062 3.938 17 H 0.061 0.939 18 N -0.337 5.337 19 C 0.040 3.960 20 C -0.399 4.399 21 H 0.078 0.922 22 C -0.241 4.241 23 N -0.581 5.581 24 Si 0.797 3.203 25 H -0.207 1.207 26 H -0.217 1.217 27 H -0.200 1.200 28 C -0.011 4.011 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.075 0.925 32 H 0.183 0.817 33 H 0.191 0.809 34 H 0.199 0.801 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.024 0.976 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.282 14.034 -21.855 26.974 hybrid contribution -1.571 -0.513 1.521 2.246 sum -8.853 13.520 -20.334 25.974 Atomic orbital electron populations 1.23383 0.76270 1.05738 1.02344 1.86073 1.23584 1.25965 1.88227 1.20039 0.93198 0.86265 0.97671 1.22068 1.02143 0.91690 1.03728 1.22387 0.95364 0.99413 0.97461 1.23142 0.92661 0.96460 0.98860 1.67404 1.41236 0.98320 1.10823 1.20148 0.88714 0.93748 1.01941 1.20472 1.02723 0.94840 0.93247 1.21000 0.76763 0.79708 0.91859 1.90663 1.53378 1.54909 1.48231 1.48229 1.52737 1.25363 1.07471 1.22126 1.00176 0.90310 0.89219 1.21894 1.01794 0.96066 0.96311 1.21923 1.00260 0.98929 0.95024 1.20677 0.96865 0.91232 0.84996 0.93867 1.44090 1.03460 1.74980 1.11203 1.20531 0.83099 0.95839 0.96487 1.19480 0.91633 1.19132 1.09643 0.92174 1.25850 0.98388 0.98157 1.01662 1.70260 1.16913 1.35849 1.35115 0.85251 0.78753 0.78563 0.77774 1.20723 1.21668 1.20031 1.21881 0.99969 0.96538 0.82730 0.90317 0.86599 0.92479 0.81651 0.80877 0.80118 0.84978 0.84966 0.89644 0.86279 0.87580 0.91837 0.92366 0.93734 0.97626 0.96004 0.96150 0.94142 0.93219 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.83 113.37 1.11 1.35 16 2 O -0.33 -7.52 9.54 -92.50 -0.88 -8.40 16 3 C 0.08 1.86 6.67 22.60 0.15 2.01 16 4 C -0.17 -3.12 9.14 22.56 0.21 -2.92 16 5 C -0.13 -2.05 10.11 22.35 0.23 -1.82 16 6 C 0.05 0.94 11.18 84.70 0.95 1.88 16 7 N -0.47 -12.68 10.27 -183.50 -1.88 -14.57 16 8 C 0.09 2.55 5.29 42.67 0.23 2.77 16 9 C -0.07 -1.76 4.13 29.10 0.12 -1.64 16 10 C 0.52 17.39 7.69 87.66 0.67 18.07 16 11 O -0.59 -26.04 15.45 -3.02 -0.05 -26.08 16 12 N -0.61 -19.01 2.97 -818.98 -2.43 -21.44 16 13 C 0.10 2.16 6.34 86.36 0.55 2.71 16 14 C -0.12 -2.84 6.08 30.67 0.19 -2.65 16 15 C -0.12 -4.21 5.15 30.62 0.16 -4.05 16 16 C 0.17 7.30 2.73 45.05 0.12 7.43 16 17 H 0.04 2.00 7.88 -2.39 -0.02 1.98 16 18 N -0.61 -32.37 2.82 -702.44 -1.98 -34.35 16 19 C 0.18 9.56 7.99 127.77 1.02 10.58 16 20 C -0.27 -15.63 9.59 84.03 0.81 -14.83 16 21 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 22 C -0.05 -2.64 5.38 84.86 0.46 -2.18 16 23 N -0.93 -56.29 10.12 21.65 0.22 -56.07 16 24 Si 0.97 46.64 29.56 68.60 2.03 48.67 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 28 C 0.11 4.54 5.78 86.35 0.50 5.04 16 29 H 0.08 0.70 7.71 -2.39 -0.02 0.68 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 0.78 7.69 -2.39 -0.02 0.76 16 32 H 0.17 1.95 6.45 -2.91 -0.02 1.93 16 33 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.13 2.50 7.94 -2.39 -0.02 2.48 16 36 H 0.13 2.54 7.06 -2.38 -0.02 2.53 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.12 1.62 5.93 -2.39 -0.01 1.61 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.06 2.00 7.71 -2.38 -0.02 1.98 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.01 0.30 7.44 -2.39 -0.02 0.28 16 44 H 0.02 0.97 6.36 -2.38 -0.02 0.96 16 45 H 0.02 1.14 7.03 -2.39 -0.02 1.13 16 46 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 47 H 0.05 2.35 7.01 -2.38 -0.02 2.33 16 48 H 0.06 2.48 6.50 -2.38 -0.02 2.46 16 Total: -1.00 -81.75 380.80 3.44 -78.32 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.96 Total: 12.18 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.46 Total: 21.74 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -6.08 Total: -126.43 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.93 Total: -34.49 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -81.75 3.44 -78.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.101 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds