Wall clock time and date at job start Tue Mar 31 2020 17:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35913 * 116.99908 * 2 1 4 4 C 1.39137 * 120.47343 * 359.97381 * 3 2 1 5 5 C 1.38539 * 118.37467 * 180.02562 * 4 3 2 6 6 C 1.38259 * 119.21958 * 0.02562 * 5 4 3 7 7 N 1.31846 * 120.88483 * 359.97438 * 6 5 4 8 8 C 1.31833 * 121.78390 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65974 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47240 * 89.99529 * 9 8 7 11 11 O 1.21278 * 120.00127 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99612 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63384 * 0.02562 * 12 10 9 14 14 C 1.53190 * 108.77690 * 126.36574 * 13 12 10 15 15 C 1.53045 * 109.31165 * 54.63237 * 14 13 12 16 16 C 1.53034 * 109.53803 * 298.63628 * 15 14 13 17 17 H 1.09003 * 109.49871 * 301.41149 * 16 15 14 18 18 N 1.46504 * 109.49389 * 181.31764 * 16 15 14 19 19 C 1.46499 * 119.99834 * 299.99322 * 18 16 15 20 20 C 1.36939 * 120.00172 * 120.00208 * 18 16 15 21 21 H 1.08003 * 119.99557 * 324.44024 * 20 18 16 22 22 C 1.38812 * 120.00400 * 144.43742 * 20 18 16 23 23 N 1.31612 * 120.00201 * 157.65742 * 22 20 18 24 24 Si 1.86806 * 119.99860 * 337.65581 * 22 20 18 25 25 H 1.48491 * 109.46957 * 95.57847 * 24 22 20 26 26 H 1.48499 * 109.47160 * 215.58174 * 24 22 20 27 27 H 1.48498 * 109.46856 * 335.57766 * 24 22 20 28 28 C 1.46924 * 120.62764 * 179.72089 * 12 10 9 29 29 H 1.08994 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47555 * 300.00395 * 1 2 3 31 31 H 1.09002 * 109.46712 * 60.00570 * 1 2 3 32 32 H 1.07999 * 120.81642 * 0.04566 * 4 3 2 33 33 H 1.07997 * 120.38876 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.55389 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47162 * 209.99769 * 9 8 7 36 36 H 1.08998 * 109.47281 * 329.99646 * 9 8 7 37 37 H 1.09000 * 109.58310 * 246.15560 * 13 12 10 38 38 H 1.08996 * 109.58325 * 6.43507 * 13 12 10 39 39 H 1.09002 * 109.49881 * 174.58506 * 14 13 12 40 40 H 1.08997 * 109.49871 * 294.68438 * 14 13 12 41 41 H 1.09000 * 109.45617 * 58.65894 * 15 14 13 42 42 H 1.08999 * 109.45520 * 178.61369 * 15 14 13 43 43 H 1.08999 * 109.46572 * 87.71090 * 19 18 16 44 44 H 1.09003 * 109.47264 * 207.70195 * 19 18 16 45 45 H 1.08993 * 109.47657 * 327.70659 * 19 18 16 46 46 H 0.97002 * 120.00237 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.58803 * 353.41645 * 28 12 10 48 48 H 1.08996 * 109.59046 * 113.84644 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0005 5 6 1.9716 3.5947 -0.0011 6 6 3.3542 3.5976 -0.0016 7 7 4.0333 2.4675 -0.0010 8 6 3.4305 1.2951 -0.0005 9 6 4.2542 0.0331 0.0006 10 6 4.5283 -0.3866 1.4219 11 8 4.0968 0.2737 2.3431 12 7 5.2520 -1.4964 1.6690 13 6 5.7809 -2.3070 0.5636 14 6 7.2900 -2.4830 0.7593 15 6 7.5555 -3.0660 2.1492 16 6 7.0395 -2.0988 3.2170 17 1 7.5356 -1.1347 3.1049 18 7 7.3223 -2.6431 4.5475 19 6 6.7626 -3.9378 4.9433 20 6 8.1096 -1.9416 5.4211 21 1 8.9442 -1.3641 5.0517 22 6 7.8352 -1.9728 6.7815 23 7 8.7836 -1.6953 7.6507 24 14 6.1195 -2.4084 7.3784 25 1 6.0622 -3.8555 7.7065 26 1 5.8004 -1.6128 8.5910 27 1 5.1321 -2.1031 6.3121 28 6 5.5327 -1.9150 3.0491 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2183 2.3519 -0.0002 33 1 1.4232 4.5251 -0.0011 34 1 3.8849 4.5382 -0.0024 35 1 3.7077 -0.7580 -0.5129 36 1 5.1982 0.2149 -0.5130 37 1 5.2962 -3.2833 0.5620 38 1 5.5895 -1.8025 -0.3834 39 1 7.6786 -3.1615 -0.0001 40 1 7.7837 -1.5154 0.6703 41 1 7.0411 -4.0221 2.2462 42 1 8.6270 -3.2153 2.2817 43 1 7.4383 -4.7354 4.6342 44 1 6.6399 -3.9650 6.0260 45 1 5.7935 -4.0765 4.4642 46 1 8.5919 -1.7174 8.6013 47 1 5.1799 -1.1508 3.7417 48 1 5.0274 -2.8587 3.2548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027544654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:32 Heat of formation + Delta-G solvation = -0.639022 kcal Electronic energy + Delta-G solvation = -29520.729627 eV Core-core repulsion = 25577.392756 eV Total energy + Delta-G solvation = -3943.336871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.02801 -39.75876 -38.33607 -37.45706 -35.20713 -33.33562 -32.30962 -31.61380 -31.47355 -29.70982 -28.26850 -27.66586 -26.14151 -25.00299 -23.77260 -23.08610 -22.52425 -21.57051 -19.65737 -18.66246 -18.27685 -17.35845 -17.12173 -16.78464 -16.42945 -16.03497 -15.51418 -15.23562 -15.10868 -14.61988 -14.20703 -14.12146 -14.07093 -13.92586 -13.45742 -13.39298 -13.04219 -12.85312 -12.66433 -12.47388 -12.27058 -12.21446 -12.14948 -11.87592 -11.71975 -11.66236 -11.31143 -10.97597 -10.59547 -10.47512 -10.35837 -10.01738 -9.97883 -9.89014 -9.72486 -9.55816 -9.48801 -8.51670 -8.47357 -8.33569 -6.81942 -5.95965 -3.36031 0.91674 1.09859 2.88781 2.93054 3.16444 3.34635 3.52463 3.58447 3.66710 4.11723 4.38854 4.48156 4.56264 4.71755 4.73957 4.81237 4.85301 4.89287 5.04237 5.12329 5.15624 5.19049 5.21027 5.31038 5.32930 5.36611 5.53431 5.60504 5.73147 5.79485 5.82391 5.87759 5.92235 6.11143 6.15939 6.23254 6.27285 6.38185 6.45603 6.52204 6.71516 6.74819 6.91368 6.94345 6.96077 7.68316 7.85360 8.06708 8.39069 8.46532 9.00466 9.73936 10.12300 11.19703 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003222 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.791685 B = 8689.506968 C = 9197.329524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.091 3.909 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.064 3.936 7 N -0.437 5.437 8 C 0.130 3.870 9 C -0.084 4.084 10 C 0.522 3.478 11 O -0.535 6.535 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.132 4.132 15 C -0.131 4.131 16 C 0.166 3.834 17 H 0.074 0.926 18 N -0.602 5.602 19 C 0.110 3.890 20 C -0.268 4.268 21 H 0.081 0.919 22 C 0.035 3.965 23 N -0.900 5.900 24 Si 0.882 3.118 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.269 1.269 28 C 0.095 3.905 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.045 0.955 45 H 0.029 0.971 46 H 0.263 0.737 47 H 0.091 0.909 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.893 3.062 -22.365 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.043 3.957 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.092 4.092 7 N -0.146 5.146 8 C -0.011 4.011 9 C -0.125 4.125 10 C 0.309 3.691 11 O -0.412 6.412 12 N -0.342 5.342 13 C -0.016 4.016 14 C -0.171 4.171 15 C -0.170 4.170 16 C 0.058 3.942 17 H 0.092 0.908 18 N -0.325 5.325 19 C -0.035 4.035 20 C -0.397 4.397 21 H 0.099 0.901 22 C -0.166 4.166 23 N -0.542 5.542 24 Si 0.713 3.287 25 H -0.216 1.216 26 H -0.231 1.231 27 H -0.194 1.194 28 C -0.029 4.029 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.087 3.268 -21.657 26.596 hybrid contribution -2.209 -0.119 0.585 2.288 sum -17.296 3.149 -21.072 27.443 Atomic orbital electron populations 1.23103 0.78235 1.04313 1.01275 1.86103 1.21464 1.25966 1.88300 1.19830 0.93068 0.85176 0.97606 1.21637 1.00633 0.92150 1.04791 1.21967 0.95784 0.98166 0.99640 1.22614 0.91418 0.96332 0.98881 1.67456 1.39999 0.97505 1.09638 1.19972 0.87711 0.93463 0.99936 1.20483 1.01414 0.94282 0.96314 1.20216 0.78167 0.80190 0.90523 1.90712 1.51187 1.52953 1.46303 1.48179 1.52548 1.25579 1.07878 1.21755 0.94849 0.95618 0.89362 1.21916 0.94979 1.01880 0.98340 1.22027 1.01967 0.99388 0.93613 1.20689 0.91644 0.96312 0.85585 0.90755 1.44086 1.58479 1.17248 1.12668 1.21323 0.95446 0.87869 0.98815 1.18820 1.06094 1.27669 0.87079 0.90129 1.25431 0.96996 0.98025 0.96116 1.69858 1.31530 1.51116 1.01663 0.86881 0.87581 0.76450 0.77821 1.21555 1.23055 1.19370 1.22356 0.98953 1.00328 0.81222 0.87916 0.92513 0.92652 0.84395 0.84539 0.82380 0.87198 0.87040 0.91494 0.90188 0.91098 0.91421 0.92494 0.91387 0.96453 0.93688 0.95223 0.92697 0.89109 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.83 101.05 0.99 1.18 16 2 O -0.31 -3.51 9.55 -19.47 -0.19 -3.69 16 3 C 0.09 1.14 6.67 -39.07 -0.26 0.88 16 4 C -0.17 -1.68 9.14 -39.14 -0.36 -2.04 16 5 C -0.14 -1.29 10.11 -39.46 -0.40 -1.69 16 6 C 0.06 0.73 11.18 -17.54 -0.20 0.54 16 7 N -0.44 -6.29 10.27 -9.35 -0.10 -6.38 16 8 C 0.13 1.82 5.29 -82.42 -0.44 1.39 16 9 C -0.08 -1.08 4.12 -29.03 -0.12 -1.20 16 10 C 0.52 8.88 7.69 -10.98 -0.08 8.79 16 11 O -0.54 -11.61 15.45 5.56 0.09 -11.53 16 12 N -0.61 -9.66 2.98 -173.06 -0.52 -10.18 16 13 C 0.11 1.22 6.35 -3.71 -0.02 1.20 16 14 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 15 C -0.13 -2.08 5.15 -26.69 -0.14 -2.22 16 16 C 0.17 3.35 2.73 -68.05 -0.19 3.17 16 17 H 0.07 1.64 7.89 -51.93 -0.41 1.23 16 18 N -0.60 -14.54 2.41 -173.62 -0.42 -14.96 16 19 C 0.11 2.43 8.55 59.85 0.51 2.94 16 20 C -0.27 -7.69 9.85 -15.06 -0.15 -7.84 16 21 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 22 C 0.03 1.03 5.31 -17.43 -0.09 0.94 16 23 N -0.90 -28.14 13.97 55.49 0.78 -27.37 16 24 Si 0.88 23.19 24.94 -169.99 -4.24 18.95 16 25 H -0.29 -7.24 6.67 56.52 0.38 -6.87 16 26 H -0.30 -8.10 7.11 56.52 0.40 -7.69 16 27 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.09 1.84 5.76 -3.95 -0.02 1.82 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 31 H 0.05 0.28 7.70 -51.93 -0.40 -0.12 16 32 H 0.14 0.99 6.45 -52.49 -0.34 0.65 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.11 1.13 7.32 -51.93 -0.38 0.75 16 36 H 0.11 1.22 7.69 -51.93 -0.40 0.82 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.87 7.72 -51.93 -0.40 0.47 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.04 1.09 3.11 -51.93 -0.16 0.93 16 45 H 0.03 0.57 6.34 -51.93 -0.33 0.25 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.09 2.11 7.01 -51.93 -0.36 1.74 16 48 H 0.06 1.10 6.46 -51.93 -0.34 0.76 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -36.90 376.91 -7.23 -44.13 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.19 Total: -0.75 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.12 Total: 6.10 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.26 Total: -58.89 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.10 Total: -15.22 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.24 Total: 18.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.90 -7.23 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.490 kcal (2) G-P(sol) polarization free energy of solvation -36.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds