Wall clock time and date at job start Tue Mar 31 2020 17:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35913 * 116.99908 * 2 1 4 4 C 1.39137 * 120.47343 * 359.97381 * 3 2 1 5 5 C 1.38539 * 118.37467 * 180.02562 * 4 3 2 6 6 C 1.38259 * 119.21958 * 0.02562 * 5 4 3 7 7 N 1.31846 * 120.88483 * 359.97438 * 6 5 4 8 8 C 1.31833 * 121.78390 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65974 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47240 * 89.99529 * 9 8 7 11 11 O 1.21278 * 120.00127 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99612 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63384 * 0.02562 * 12 10 9 14 14 C 1.53190 * 108.77690 * 126.36574 * 13 12 10 15 15 C 1.53045 * 109.31165 * 54.63237 * 14 13 12 16 16 C 1.53034 * 109.53803 * 298.63628 * 15 14 13 17 17 H 1.09003 * 109.49871 * 301.41149 * 16 15 14 18 18 N 1.46504 * 109.49389 * 181.31764 * 16 15 14 19 19 C 1.46499 * 119.99834 * 299.99322 * 18 16 15 20 20 C 1.36939 * 120.00172 * 120.00208 * 18 16 15 21 21 H 1.08003 * 119.99557 * 324.44024 * 20 18 16 22 22 C 1.38812 * 120.00400 * 144.43742 * 20 18 16 23 23 N 1.31612 * 120.00201 * 157.65742 * 22 20 18 24 24 Si 1.86806 * 119.99860 * 337.65581 * 22 20 18 25 25 H 1.48491 * 109.46957 * 95.57847 * 24 22 20 26 26 H 1.48499 * 109.47160 * 215.58174 * 24 22 20 27 27 H 1.48498 * 109.46856 * 335.57766 * 24 22 20 28 28 C 1.46924 * 120.62764 * 179.72089 * 12 10 9 29 29 H 1.08994 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47555 * 300.00395 * 1 2 3 31 31 H 1.09002 * 109.46712 * 60.00570 * 1 2 3 32 32 H 1.07999 * 120.81642 * 0.04566 * 4 3 2 33 33 H 1.07997 * 120.38876 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.55389 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47162 * 209.99769 * 9 8 7 36 36 H 1.08998 * 109.47281 * 329.99646 * 9 8 7 37 37 H 1.09000 * 109.58310 * 246.15560 * 13 12 10 38 38 H 1.08996 * 109.58325 * 6.43507 * 13 12 10 39 39 H 1.09002 * 109.49881 * 174.58506 * 14 13 12 40 40 H 1.08997 * 109.49871 * 294.68438 * 14 13 12 41 41 H 1.09000 * 109.45617 * 58.65894 * 15 14 13 42 42 H 1.08999 * 109.45520 * 178.61369 * 15 14 13 43 43 H 1.08999 * 109.46572 * 87.71090 * 19 18 16 44 44 H 1.09003 * 109.47264 * 207.70195 * 19 18 16 45 45 H 1.08993 * 109.47657 * 327.70659 * 19 18 16 46 46 H 0.97002 * 120.00237 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.58803 * 353.41645 * 28 12 10 48 48 H 1.08996 * 109.59046 * 113.84644 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0005 5 6 1.9716 3.5947 -0.0011 6 6 3.3542 3.5976 -0.0016 7 7 4.0333 2.4675 -0.0010 8 6 3.4305 1.2951 -0.0005 9 6 4.2542 0.0331 0.0006 10 6 4.5283 -0.3866 1.4219 11 8 4.0968 0.2737 2.3431 12 7 5.2520 -1.4964 1.6690 13 6 5.7809 -2.3070 0.5636 14 6 7.2900 -2.4830 0.7593 15 6 7.5555 -3.0660 2.1492 16 6 7.0395 -2.0988 3.2170 17 1 7.5356 -1.1347 3.1049 18 7 7.3223 -2.6431 4.5475 19 6 6.7626 -3.9378 4.9433 20 6 8.1096 -1.9416 5.4211 21 1 8.9442 -1.3641 5.0517 22 6 7.8352 -1.9728 6.7815 23 7 8.7836 -1.6953 7.6507 24 14 6.1195 -2.4084 7.3784 25 1 6.0622 -3.8555 7.7065 26 1 5.8004 -1.6128 8.5910 27 1 5.1321 -2.1031 6.3121 28 6 5.5327 -1.9150 3.0491 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2183 2.3519 -0.0002 33 1 1.4232 4.5251 -0.0011 34 1 3.8849 4.5382 -0.0024 35 1 3.7077 -0.7580 -0.5129 36 1 5.1982 0.2149 -0.5130 37 1 5.2962 -3.2833 0.5620 38 1 5.5895 -1.8025 -0.3834 39 1 7.6786 -3.1615 -0.0001 40 1 7.7837 -1.5154 0.6703 41 1 7.0411 -4.0221 2.2462 42 1 8.6270 -3.2153 2.2817 43 1 7.4383 -4.7354 4.6342 44 1 6.6399 -3.9650 6.0260 45 1 5.7935 -4.0765 4.4642 46 1 8.5919 -1.7174 8.6013 47 1 5.1799 -1.1508 3.7417 48 1 5.0274 -2.8587 3.2548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027544654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:31 Heat of formation + Delta-G solvation = -27.326621 kcal Electronic energy + Delta-G solvation = -29521.886888 eV Core-core repulsion = 25577.392756 eV Total energy + Delta-G solvation = -3944.494132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91368 -40.99304 -39.15573 -38.91135 -36.86504 -34.39284 -33.94592 -33.09017 -32.47054 -31.15473 -29.26284 -28.31649 -28.08821 -26.22644 -25.48634 -23.86243 -23.50267 -22.96826 -21.14340 -19.93870 -19.05461 -18.93338 -18.32293 -18.15691 -17.41955 -17.38919 -16.81537 -16.55327 -16.35086 -15.76516 -15.48363 -15.31599 -15.16569 -14.92765 -14.78439 -14.47823 -14.36478 -14.18636 -14.12700 -14.10392 -13.88274 -13.55829 -13.24195 -13.01845 -12.92855 -12.59075 -12.36303 -12.32787 -12.24767 -12.08096 -11.86017 -11.75619 -11.65097 -11.45501 -10.99997 -10.66964 -10.60807 -10.57200 -9.70598 -9.34233 -8.79855 -8.26124 -5.62088 0.09061 0.29123 1.22176 1.36855 1.47045 1.62902 1.96562 2.23282 2.35296 2.78451 3.01599 3.26670 3.33452 3.61689 3.66098 3.81206 3.96434 4.05025 4.08795 4.12118 4.19712 4.26110 4.31441 4.33492 4.35557 4.45293 4.47820 4.52378 4.60537 4.68872 4.71736 4.74842 4.79395 4.86594 4.93034 4.97423 5.02673 5.04810 5.10447 5.17458 5.44031 5.49366 5.50146 5.51799 5.87381 6.10206 6.21375 6.45653 6.92004 7.00785 7.18544 7.57161 7.96924 8.94164 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003222 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.791685 B = 8689.506968 C = 9197.329524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.127 4.127 6 C 0.044 3.956 7 N -0.472 5.472 8 C 0.093 3.907 9 C -0.072 4.072 10 C 0.515 3.485 11 O -0.593 6.593 12 N -0.606 5.606 13 C 0.102 3.898 14 C -0.125 4.125 15 C -0.121 4.121 16 C 0.165 3.835 17 H 0.039 0.961 18 N -0.616 5.616 19 C 0.108 3.892 20 C -0.261 4.261 21 H 0.041 0.959 22 C -0.020 4.020 23 N -0.948 5.948 24 Si 0.947 3.053 25 H -0.264 1.264 26 H -0.311 1.311 27 H -0.270 1.270 28 C 0.108 3.892 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.264 0.736 47 H 0.042 0.958 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.633 1.672 -25.518 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.031 3.969 4 C -0.195 4.195 5 C -0.146 4.146 6 C -0.113 4.113 7 N -0.182 5.182 8 C -0.047 4.047 9 C -0.112 4.112 10 C 0.305 3.695 11 O -0.474 6.474 12 N -0.339 5.339 13 C -0.019 4.019 14 C -0.163 4.163 15 C -0.160 4.160 16 C 0.058 3.942 17 H 0.058 0.942 18 N -0.340 5.340 19 C -0.035 4.035 20 C -0.391 4.391 21 H 0.059 0.941 22 C -0.217 4.217 23 N -0.592 5.592 24 Si 0.776 3.224 25 H -0.191 1.191 26 H -0.240 1.240 27 H -0.195 1.195 28 C -0.017 4.017 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.195 0.805 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.835 1.822 -24.888 30.673 hybrid contribution -1.348 0.388 1.480 2.039 sum -19.183 2.210 -23.408 30.344 Atomic orbital electron populations 1.23402 0.76191 1.05877 1.02320 1.86058 1.23629 1.25729 1.88228 1.19983 0.93023 0.86332 0.97590 1.22071 1.02179 0.91594 1.03686 1.22384 0.95218 0.99582 0.97461 1.23116 0.92785 0.96395 0.98988 1.67401 1.41455 0.98506 1.10816 1.20179 0.88867 0.93688 1.01930 1.20479 1.02621 0.94949 0.93133 1.21057 0.77145 0.79466 0.91875 1.90676 1.53548 1.54737 1.48398 1.48265 1.52261 1.25919 1.07470 1.22166 0.94080 0.96608 0.89061 1.21909 0.95729 1.02080 0.96624 1.21890 1.00921 0.98882 0.94279 1.20770 0.92284 0.96044 0.85129 0.94235 1.44188 1.58438 1.18082 1.13339 1.21394 0.97276 0.87015 0.97855 1.18718 1.05496 1.26868 0.87991 0.94081 1.26026 1.00213 0.99117 0.96305 1.69974 1.33394 1.53852 1.01962 0.85833 0.82649 0.77293 0.76631 1.19053 1.23958 1.19502 1.21865 0.97730 0.99196 0.82881 0.86231 0.92522 0.90454 0.81411 0.80893 0.80465 0.84394 0.85367 0.88945 0.86527 0.87009 0.92442 0.90835 0.92807 0.94636 0.95653 0.92171 0.92687 0.93944 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 113.37 1.11 1.31 16 2 O -0.32 -6.84 9.55 -92.57 -0.88 -7.72 16 3 C 0.08 1.88 6.67 22.60 0.15 2.03 16 4 C -0.17 -3.07 9.14 22.56 0.21 -2.86 16 5 C -0.13 -2.15 10.11 22.35 0.23 -1.92 16 6 C 0.04 0.97 11.18 84.70 0.95 1.92 16 7 N -0.47 -13.58 10.27 -183.50 -1.88 -15.46 16 8 C 0.09 2.56 5.29 42.67 0.23 2.78 16 9 C -0.07 -1.73 4.12 29.10 0.12 -1.61 16 10 C 0.52 17.42 7.69 87.66 0.67 18.09 16 11 O -0.59 -26.75 15.45 -3.02 -0.05 -26.80 16 12 N -0.61 -18.52 2.98 -819.82 -2.44 -20.97 16 13 C 0.10 1.92 6.35 86.36 0.55 2.47 16 14 C -0.12 -2.60 6.08 30.67 0.19 -2.41 16 15 C -0.12 -3.62 5.15 30.62 0.16 -3.46 16 16 C 0.16 6.75 2.73 44.91 0.12 6.88 16 17 H 0.04 1.85 7.89 -2.39 -0.02 1.83 16 18 N -0.62 -30.21 2.41 -703.23 -1.70 -31.90 16 19 C 0.11 4.62 8.55 127.77 1.09 5.71 16 20 C -0.26 -15.65 9.85 84.03 0.83 -14.82 16 21 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 22 C -0.02 -1.23 5.31 84.86 0.45 -0.78 16 23 N -0.95 -61.61 13.97 21.65 0.30 -61.31 16 24 Si 0.95 49.26 24.94 68.60 1.71 50.97 16 25 H -0.26 -12.63 6.67 99.48 0.66 -11.96 16 26 H -0.31 -16.44 7.11 99.48 0.71 -15.74 16 27 H -0.27 -13.96 7.11 99.48 0.71 -13.25 16 28 C 0.11 4.20 5.76 86.21 0.50 4.70 16 29 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.65 7.70 -2.39 -0.02 0.64 16 31 H 0.08 0.55 7.70 -2.39 -0.02 0.53 16 32 H 0.17 1.85 6.45 -2.91 -0.02 1.83 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.14 2.43 7.32 -2.39 -0.02 2.41 16 36 H 0.13 2.56 7.69 -2.39 -0.02 2.54 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.43 5.93 -2.39 -0.01 1.42 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.99 7.72 -2.39 -0.02 1.97 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.03 1.18 3.11 -2.39 -0.01 1.18 16 45 H 0.06 2.18 6.34 -2.39 -0.02 2.16 16 46 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 47 H 0.04 2.05 7.01 -2.39 -0.02 2.04 16 48 H 0.07 2.55 6.46 -2.39 -0.02 2.53 16 Total: -1.00 -87.82 376.91 3.53 -84.29 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.92 Total: 10.88 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 7.55 Total: 18.01 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -5.72 Total: -129.64 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.93 Total: -34.52 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.71 Total: 50.97 kcal Total: -87.82 3.53 -84.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.967 kcal (2) G-P(sol) polarization free energy of solvation -87.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds