Wall clock time and date at job start Tue Mar 31 2020 17:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35913 * 116.99948 * 2 1 4 4 C 1.39136 * 120.47311 * 179.97438 * 3 2 1 5 5 C 1.38530 * 118.37481 * 179.75296 * 4 3 2 6 6 C 1.38251 * 119.21973 * 0.53306 * 5 4 3 7 7 C 1.50703 * 119.55587 * 179.73131 * 6 5 4 8 8 C 1.50703 * 109.47222 * 124.73005 * 7 6 5 9 9 O 1.21278 * 119.99857 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00045 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63105 * 359.97438 * 10 8 7 12 12 C 1.53187 * 108.77864 * 233.61117 * 11 10 8 13 13 C 1.53042 * 109.31341 * 305.36443 * 12 11 10 14 14 C 1.53039 * 109.53460 * 61.36405 * 13 12 11 15 15 H 1.08999 * 109.50166 * 58.61876 * 14 13 12 16 16 N 1.46501 * 109.49603 * 178.68521 * 14 13 12 17 17 C 1.46495 * 120.00148 * 59.93699 * 16 14 13 18 18 C 1.36942 * 119.99873 * 239.93382 * 16 14 13 19 19 H 1.08004 * 120.00245 * 334.66574 * 18 16 14 20 20 C 1.38815 * 120.00062 * 154.66266 * 18 16 14 21 21 N 1.31622 * 119.99508 * 4.07726 * 20 18 16 22 22 Si 1.86797 * 120.00036 * 184.07441 * 20 18 16 23 23 H 1.48505 * 109.46927 * 60.00157 * 22 20 18 24 24 H 1.48497 * 109.47163 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47291 * 300.00203 * 22 20 18 26 26 C 1.46931 * 120.60403 * 180.02562 * 10 8 7 27 27 N 1.31844 * 120.89174 * 359.45295 * 6 5 4 28 28 C 1.31850 * 121.77293 * 0.28097 * 27 6 5 29 29 H 1.09006 * 109.46979 * 60.00134 * 1 2 3 30 30 H 1.09004 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47102 * 299.99751 * 1 2 3 32 32 H 1.08008 * 120.81064 * 0.02562 * 4 3 2 33 33 H 1.08006 * 120.39011 * 180.26420 * 5 4 3 34 34 H 1.08995 * 109.47325 * 4.73097 * 7 6 5 35 35 H 1.09008 * 109.47098 * 244.72516 * 7 6 5 36 36 H 1.09001 * 109.58790 * 113.82183 * 11 10 8 37 37 H 1.08998 * 109.58881 * 353.40045 * 11 10 8 38 38 H 1.08999 * 109.49864 * 185.41788 * 12 11 10 39 39 H 1.08996 * 109.49994 * 65.31614 * 12 11 10 40 40 H 1.08995 * 109.46334 * 301.34592 * 13 12 11 41 41 H 1.09003 * 109.46251 * 181.38101 * 13 12 11 42 42 H 1.09004 * 109.47133 * 264.48327 * 17 16 14 43 43 H 1.08993 * 109.47509 * 24.48319 * 17 16 14 44 44 H 1.09006 * 109.47379 * 144.48910 * 17 16 14 45 45 H 0.97005 * 119.99235 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.61869 * 6.61673 * 26 10 8 47 47 H 1.09006 * 109.56140 * 246.19487 * 26 10 8 48 48 H 1.07996 * 119.65608 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0181 2.5518 -0.0047 6 6 3.2079 3.6720 0.0009 7 6 3.8345 5.0426 0.0014 8 6 3.3025 5.8386 -1.1625 9 8 2.4946 5.3416 -1.9182 10 7 3.7246 7.1026 -1.3636 11 6 4.7025 7.7185 -0.4564 12 6 4.1342 9.0466 0.0533 13 6 3.7458 9.9222 -1.1403 14 6 2.6638 9.2172 -1.9615 15 1 1.7963 9.0237 -1.3306 16 7 2.2702 10.0698 -3.0860 17 6 3.2653 10.4734 -4.0826 18 6 0.9722 10.4893 -3.2056 19 1 0.1747 9.9108 -2.7631 20 6 0.6813 11.6582 -3.8957 21 7 1.6430 12.3204 -4.5031 22 14 -1.0749 12.2911 -3.9621 23 1 -1.5570 12.5590 -2.5833 24 1 -1.1190 13.5465 -4.7541 25 1 -1.9448 11.2713 -4.6012 26 6 3.2143 7.8909 -2.4937 27 7 1.8945 3.5574 0.0004 28 6 1.3002 2.3804 0.0000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0433 0.4029 0.0005 33 1 5.0932 2.6551 -0.0088 34 1 4.9166 4.9475 -0.0879 35 1 3.5902 5.5535 0.9328 36 1 5.6338 7.9013 -0.9925 37 1 4.8885 7.0531 0.3867 38 1 4.8880 9.5596 0.6506 39 1 3.2531 8.8543 0.6654 40 1 4.6221 10.0937 -1.7654 41 1 3.3638 10.8777 -0.7807 42 1 3.6604 11.4559 -3.8242 43 1 4.0783 9.7477 -4.0990 44 1 2.7974 10.5173 -5.0662 45 1 1.4397 13.1374 -4.9850 46 1 2.4184 7.3396 -2.9946 47 1 4.0239 8.0873 -3.1967 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027545873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:39 Heat of formation + Delta-G solvation = -3.044199 kcal Electronic energy + Delta-G solvation = -28763.131795 eV Core-core repulsion = 24819.690628 eV Total energy + Delta-G solvation = -3943.441167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94290 -39.82233 -38.42196 -37.21848 -35.02215 -32.74727 -32.59836 -32.06862 -31.24322 -29.11052 -28.16522 -27.31363 -25.96653 -24.88296 -23.69022 -23.37313 -22.28316 -21.56282 -19.55463 -18.53892 -18.37466 -17.43971 -16.86056 -16.66901 -16.26341 -16.11482 -15.43620 -15.16808 -14.80825 -14.42475 -14.36878 -14.02725 -13.94123 -13.65599 -13.63085 -13.15327 -12.96097 -12.77477 -12.58928 -12.41306 -12.26635 -12.14862 -11.97273 -11.88849 -11.59634 -11.02601 -10.92632 -10.73166 -10.60179 -10.33127 -10.22610 -10.10006 -9.91658 -9.85482 -9.74551 -9.55646 -9.39573 -8.54253 -8.49559 -8.25836 -6.68723 -5.68774 -3.15651 0.91652 1.12217 2.87439 2.92078 3.21178 3.42872 3.47076 3.48977 3.66882 4.13826 4.43428 4.44931 4.53018 4.62315 4.76555 4.82126 4.90261 4.98813 5.06272 5.16185 5.19231 5.24438 5.30306 5.35917 5.41942 5.48706 5.60347 5.63393 5.73652 5.83628 5.86767 5.92978 6.05638 6.21677 6.27436 6.29238 6.44878 6.57503 6.73856 6.88384 6.92174 7.00728 7.06479 7.53741 7.72540 7.81552 7.89622 7.89922 8.45602 8.51684 9.30510 9.91069 10.40340 11.35528 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002596 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.434448 B =10783.450056 C =12060.297508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.069 3.931 4 C -0.110 4.110 5 C -0.127 4.127 6 C 0.109 3.891 7 C -0.087 4.087 8 C 0.517 3.483 9 O -0.526 6.526 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.131 4.131 14 C 0.170 3.830 15 H 0.064 0.936 16 N -0.596 5.596 17 C 0.166 3.834 18 C -0.253 4.253 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.911 5.911 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.099 3.901 27 N -0.417 5.417 28 C 0.027 3.973 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.025 0.975 43 H -0.008 1.008 44 H 0.052 0.948 45 H 0.252 0.748 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -20.394 13.125 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.227 6.227 3 C 0.022 3.978 4 C -0.136 4.136 5 C -0.147 4.147 6 C -0.030 4.030 7 C -0.127 4.127 8 C 0.303 3.697 9 O -0.401 6.401 10 N -0.344 5.344 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.171 4.171 14 C 0.061 3.939 15 H 0.082 0.918 16 N -0.319 5.319 17 C 0.022 3.978 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.556 5.556 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.025 4.025 27 N -0.126 5.126 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.764 -19.936 12.557 24.513 hybrid contribution -0.611 -0.074 -0.086 0.622 sum 6.153 -20.010 12.471 24.368 Atomic orbital electron populations 1.23128 0.77931 1.04257 1.01836 1.86050 1.21728 1.26175 1.88713 1.20099 0.93315 0.85744 0.98634 1.20834 0.91641 0.98672 1.02450 1.21778 1.01204 0.91644 1.00030 1.20508 0.89291 0.94349 0.98855 1.20587 1.00811 0.91738 0.99592 1.20179 0.81802 0.81618 0.86105 1.90722 1.32938 1.69488 1.46960 1.48185 1.43753 1.12862 1.29553 1.21740 0.91647 0.95152 0.92972 1.21935 1.00959 0.95442 0.98837 1.22106 1.00015 0.99119 0.95889 1.20569 0.95155 0.88743 0.89469 0.91782 1.43879 1.07172 1.57311 1.23498 1.20860 0.89038 0.94696 0.93227 1.19202 0.83467 1.03121 1.32465 0.91462 1.25132 0.97511 0.96412 1.00210 1.70083 1.30501 1.18057 1.36965 0.86328 0.84464 0.78147 0.77597 1.20990 1.21644 1.20998 1.22379 0.99388 0.93249 0.87484 1.67324 1.11465 1.26225 1.07603 1.22903 1.00546 0.86921 1.02821 0.92198 0.87964 0.92357 0.84065 0.84059 0.87602 0.87249 0.91494 0.90414 0.91352 0.91738 0.92487 0.91607 0.95655 0.98984 0.92961 0.93751 0.89374 0.92031 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.10 10.51 -19.47 -0.20 -3.30 16 3 C 0.07 0.77 6.71 -39.08 -0.26 0.51 16 4 C -0.11 -1.08 10.13 -39.14 -0.40 -1.48 16 5 C -0.13 -1.24 9.70 -39.47 -0.38 -1.63 16 6 C 0.11 1.37 5.76 -82.58 -0.48 0.90 16 7 C -0.09 -0.95 4.45 -29.03 -0.13 -1.08 16 8 C 0.52 8.21 7.63 -10.98 -0.08 8.12 16 9 O -0.53 -10.79 14.74 5.56 0.08 -10.71 16 10 N -0.61 -9.34 2.97 -172.79 -0.51 -9.86 16 11 C 0.11 1.22 6.34 -3.72 -0.02 1.20 16 12 C -0.13 -1.69 6.08 -26.61 -0.16 -1.86 16 13 C -0.13 -2.29 5.15 -26.69 -0.14 -2.43 16 14 C 0.17 3.54 2.73 -67.83 -0.19 3.35 16 15 H 0.06 1.43 7.88 -51.93 -0.41 1.02 16 16 N -0.60 -15.14 2.82 -173.37 -0.49 -15.62 16 17 C 0.17 4.13 7.99 59.84 0.48 4.61 16 18 C -0.25 -7.12 9.59 -15.06 -0.14 -7.26 16 19 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 20 C 0.01 0.14 5.38 -17.43 -0.09 0.05 16 21 N -0.91 -26.66 10.12 55.49 0.56 -26.09 16 22 Si 0.90 22.31 29.56 -169.99 -5.02 17.28 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.10 1.88 5.78 -3.73 -0.02 1.85 16 27 N -0.42 -6.19 9.21 -9.35 -0.09 -6.28 16 28 C 0.03 0.34 10.22 -17.37 -0.18 0.16 16 29 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 0.90 7.95 -52.48 -0.42 0.49 16 34 H 0.11 0.78 7.67 -51.93 -0.40 0.38 16 35 H 0.11 1.02 7.69 -51.92 -0.40 0.62 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.03 0.67 7.44 -51.93 -0.39 0.28 16 43 H -0.01 -0.18 6.36 -51.93 -0.33 -0.51 16 44 H 0.05 1.43 7.03 -51.93 -0.37 1.06 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.09 1.94 7.01 -51.92 -0.36 1.58 16 47 H 0.06 1.17 6.50 -51.93 -0.34 0.83 16 48 H 0.16 1.60 6.32 -52.49 -0.33 1.27 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -35.44 380.48 -8.47 -43.91 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.33 Total: -1.22 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.21 Total: 6.16 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.53 Total: -57.85 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.12 Total: -14.01 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.44 -8.47 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027545873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.863 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds