Wall clock time and date at job start Tue Mar 31 2020 17:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35913 * 116.99948 * 2 1 4 4 C 1.39136 * 120.47311 * 179.97438 * 3 2 1 5 5 C 1.38530 * 118.37481 * 179.75296 * 4 3 2 6 6 C 1.38251 * 119.21973 * 0.53306 * 5 4 3 7 7 C 1.50703 * 119.55587 * 179.73131 * 6 5 4 8 8 C 1.50703 * 109.47222 * 124.73005 * 7 6 5 9 9 O 1.21278 * 119.99857 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00045 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63105 * 359.97438 * 10 8 7 12 12 C 1.53187 * 108.77864 * 233.61117 * 11 10 8 13 13 C 1.53042 * 109.31341 * 305.36443 * 12 11 10 14 14 C 1.53039 * 109.53460 * 61.36405 * 13 12 11 15 15 H 1.08999 * 109.50166 * 58.61876 * 14 13 12 16 16 N 1.46501 * 109.49603 * 178.68521 * 14 13 12 17 17 C 1.46495 * 120.00148 * 59.93699 * 16 14 13 18 18 C 1.36942 * 119.99873 * 239.93382 * 16 14 13 19 19 H 1.08004 * 120.00245 * 334.66574 * 18 16 14 20 20 C 1.38815 * 120.00062 * 154.66266 * 18 16 14 21 21 N 1.31622 * 119.99508 * 4.07726 * 20 18 16 22 22 Si 1.86797 * 120.00036 * 184.07441 * 20 18 16 23 23 H 1.48505 * 109.46927 * 60.00157 * 22 20 18 24 24 H 1.48497 * 109.47163 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47291 * 300.00203 * 22 20 18 26 26 C 1.46931 * 120.60403 * 180.02562 * 10 8 7 27 27 N 1.31844 * 120.89174 * 359.45295 * 6 5 4 28 28 C 1.31850 * 121.77293 * 0.28097 * 27 6 5 29 29 H 1.09006 * 109.46979 * 60.00134 * 1 2 3 30 30 H 1.09004 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47102 * 299.99751 * 1 2 3 32 32 H 1.08008 * 120.81064 * 0.02562 * 4 3 2 33 33 H 1.08006 * 120.39011 * 180.26420 * 5 4 3 34 34 H 1.08995 * 109.47325 * 4.73097 * 7 6 5 35 35 H 1.09008 * 109.47098 * 244.72516 * 7 6 5 36 36 H 1.09001 * 109.58790 * 113.82183 * 11 10 8 37 37 H 1.08998 * 109.58881 * 353.40045 * 11 10 8 38 38 H 1.08999 * 109.49864 * 185.41788 * 12 11 10 39 39 H 1.08996 * 109.49994 * 65.31614 * 12 11 10 40 40 H 1.08995 * 109.46334 * 301.34592 * 13 12 11 41 41 H 1.09003 * 109.46251 * 181.38101 * 13 12 11 42 42 H 1.09004 * 109.47133 * 264.48327 * 17 16 14 43 43 H 1.08993 * 109.47509 * 24.48319 * 17 16 14 44 44 H 1.09006 * 109.47379 * 144.48910 * 17 16 14 45 45 H 0.97005 * 119.99235 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.61869 * 6.61673 * 26 10 8 47 47 H 1.09006 * 109.56140 * 246.19487 * 26 10 8 48 48 H 1.07996 * 119.65608 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0181 2.5518 -0.0047 6 6 3.2079 3.6720 0.0009 7 6 3.8345 5.0426 0.0014 8 6 3.3025 5.8386 -1.1625 9 8 2.4946 5.3416 -1.9182 10 7 3.7246 7.1026 -1.3636 11 6 4.7025 7.7185 -0.4564 12 6 4.1342 9.0466 0.0533 13 6 3.7458 9.9222 -1.1403 14 6 2.6638 9.2172 -1.9615 15 1 1.7963 9.0237 -1.3306 16 7 2.2702 10.0698 -3.0860 17 6 3.2653 10.4734 -4.0826 18 6 0.9722 10.4893 -3.2056 19 1 0.1747 9.9108 -2.7631 20 6 0.6813 11.6582 -3.8957 21 7 1.6430 12.3204 -4.5031 22 14 -1.0749 12.2911 -3.9621 23 1 -1.5570 12.5590 -2.5833 24 1 -1.1190 13.5465 -4.7541 25 1 -1.9448 11.2713 -4.6012 26 6 3.2143 7.8909 -2.4937 27 7 1.8945 3.5574 0.0004 28 6 1.3002 2.3804 0.0000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0433 0.4029 0.0005 33 1 5.0932 2.6551 -0.0088 34 1 4.9166 4.9475 -0.0879 35 1 3.5902 5.5535 0.9328 36 1 5.6338 7.9013 -0.9925 37 1 4.8885 7.0531 0.3867 38 1 4.8880 9.5596 0.6506 39 1 3.2531 8.8543 0.6654 40 1 4.6221 10.0937 -1.7654 41 1 3.3638 10.8777 -0.7807 42 1 3.6604 11.4559 -3.8242 43 1 4.0783 9.7477 -4.0990 44 1 2.7974 10.5173 -5.0662 45 1 1.4397 13.1374 -4.9850 46 1 2.4184 7.3396 -2.9946 47 1 4.0239 8.0873 -3.1967 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027545873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:38 Heat of formation + Delta-G solvation = -27.036107 kcal Electronic energy + Delta-G solvation = -28764.172162 eV Core-core repulsion = 24819.690628 eV Total energy + Delta-G solvation = -3944.481535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78438 -40.99111 -39.30835 -38.60158 -36.72452 -34.10621 -33.37823 -33.25806 -32.81460 -30.60484 -29.04976 -28.14153 -28.05242 -26.10000 -25.23488 -24.32642 -23.19066 -22.98624 -21.02686 -19.82865 -19.11904 -18.80975 -18.34800 -17.82451 -17.23927 -17.07603 -16.80153 -16.33149 -16.21669 -15.66856 -15.36451 -15.16810 -15.14031 -14.98710 -14.85516 -14.42832 -14.19635 -13.97121 -13.89428 -13.70018 -13.57287 -13.15507 -12.96120 -12.87503 -12.75943 -12.70759 -12.51684 -12.31909 -12.25010 -12.12949 -11.92315 -11.76268 -11.64145 -11.36821 -10.81641 -10.64367 -10.60997 -10.31137 -9.63311 -9.34613 -8.72650 -7.86026 -5.34813 0.12413 0.33550 1.42547 1.44805 1.51542 1.74767 2.05441 2.23900 2.48312 2.81191 3.26874 3.33528 3.62993 3.67087 3.70969 3.77002 4.02364 4.03906 4.15884 4.20118 4.27353 4.32909 4.33613 4.39797 4.40281 4.54037 4.58646 4.65281 4.68507 4.73292 4.79089 4.82123 4.91548 4.94151 5.00061 5.08661 5.12122 5.19373 5.34902 5.47047 5.53048 5.53351 5.60015 5.64194 5.77420 6.20538 6.32816 6.56721 7.07702 7.14776 7.31721 7.85711 8.28336 9.16158 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002596 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.434448 B =10783.450056 C =12060.297508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.065 3.935 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.082 3.918 7 C -0.076 4.076 8 C 0.509 3.491 9 O -0.584 6.584 10 N -0.609 5.609 11 C 0.104 3.896 12 C -0.124 4.124 13 C -0.122 4.122 14 C 0.169 3.831 15 H 0.039 0.961 16 N -0.615 5.615 17 C 0.185 3.815 18 C -0.269 4.269 19 H 0.058 0.942 20 C -0.046 4.046 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.281 1.281 26 C 0.115 3.885 27 N -0.463 5.463 28 C 0.002 3.998 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.005 0.995 43 H 0.023 0.977 44 H 0.019 0.981 45 H 0.249 0.751 46 H 0.046 0.954 47 H 0.064 0.936 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.151 -21.946 15.421 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.017 3.983 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.057 4.057 7 C -0.116 4.116 8 C 0.298 3.702 9 O -0.463 6.463 10 N -0.342 5.342 11 C -0.017 4.017 12 C -0.163 4.163 13 C -0.162 4.162 14 C 0.061 3.939 15 H 0.057 0.943 16 N -0.338 5.338 17 C 0.041 3.959 18 C -0.399 4.399 19 H 0.076 0.924 20 C -0.241 4.241 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.207 1.207 26 C -0.010 4.010 27 N -0.173 5.173 28 C -0.156 4.156 29 H 0.075 0.925 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.201 0.799 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.273 -21.511 14.909 27.767 hybrid contribution -1.415 0.311 -0.798 1.654 sum 7.859 -21.200 14.111 26.652 Atomic orbital electron populations 1.23373 0.76422 1.05958 1.02083 1.86039 1.23372 1.25649 1.88511 1.20269 0.94135 0.85656 0.98193 1.21280 0.91350 0.99970 1.01551 1.22188 1.02972 0.90496 0.97756 1.20941 0.89032 0.95994 0.99776 1.20712 1.03131 0.90180 0.97528 1.21179 0.80754 0.81568 0.86706 1.90703 1.35530 1.70742 1.49323 1.48278 1.44218 1.12740 1.28982 1.22129 0.90795 0.94883 0.93877 1.21909 1.02007 0.95650 0.96735 1.21927 0.98340 0.98546 0.97370 1.20695 0.95605 0.89256 0.88350 0.94268 1.44095 1.06499 1.58018 1.25226 1.20528 0.89323 0.94583 0.91467 1.19425 0.84800 1.03337 1.32330 0.92372 1.25844 1.01378 0.96675 1.00190 1.70247 1.32127 1.18162 1.37575 0.85340 0.80000 0.77375 0.77715 1.20251 1.21364 1.20748 1.21813 0.98188 0.92108 0.88875 1.67255 1.13333 1.27539 1.09144 1.23028 1.01123 0.87249 1.04178 0.92534 0.85509 0.91601 0.81470 0.79920 0.82743 0.85151 0.89444 0.85596 0.87643 0.92209 0.92234 0.94099 0.97680 0.95832 0.96216 0.94119 0.93492 0.91809 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 113.37 1.11 1.31 16 2 O -0.32 -6.09 10.51 -92.57 -0.97 -7.07 16 3 C 0.07 1.40 6.71 22.60 0.15 1.55 16 4 C -0.12 -2.00 10.13 22.56 0.23 -1.77 16 5 C -0.11 -1.86 9.70 22.34 0.22 -1.64 16 6 C 0.08 1.89 5.76 42.56 0.25 2.13 16 7 C -0.08 -1.38 4.45 29.10 0.13 -1.25 16 8 C 0.51 15.49 7.63 87.66 0.67 16.16 16 9 O -0.58 -24.63 14.74 -3.02 -0.04 -24.68 16 10 N -0.61 -17.58 2.97 -818.98 -2.43 -20.02 16 11 C 0.10 1.87 6.34 86.36 0.55 2.42 16 12 C -0.12 -2.75 6.08 30.67 0.19 -2.56 16 13 C -0.12 -4.17 5.15 30.62 0.16 -4.01 16 14 C 0.17 7.21 2.73 45.05 0.12 7.33 16 15 H 0.04 1.83 7.88 -2.39 -0.02 1.81 16 16 N -0.62 -32.43 2.82 -702.42 -1.98 -34.42 16 17 C 0.19 9.52 7.99 127.77 1.02 10.54 16 18 C -0.27 -15.74 9.59 84.03 0.81 -14.93 16 19 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 20 C -0.05 -2.67 5.38 84.86 0.46 -2.21 16 21 N -0.93 -56.39 10.12 21.65 0.22 -56.17 16 22 Si 0.97 47.03 29.56 68.60 2.03 49.06 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 26 C 0.12 4.46 5.78 86.35 0.50 4.96 16 27 N -0.46 -13.80 9.21 -183.49 -1.69 -15.49 16 28 C 0.00 0.06 10.22 84.80 0.87 0.93 16 29 H 0.06 0.72 7.68 -2.38 -0.02 0.71 16 30 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.70 7.68 -2.39 -0.02 0.68 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.18 1.29 7.95 -2.91 -0.02 1.27 16 34 H 0.15 1.26 7.67 -2.39 -0.02 1.24 16 35 H 0.13 1.84 7.69 -2.38 -0.02 1.82 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 1.15 5.93 -2.39 -0.01 1.14 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.99 7.71 -2.39 -0.02 1.97 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.00 0.27 7.44 -2.38 -0.02 0.25 16 43 H 0.02 1.03 6.36 -2.39 -0.02 1.02 16 44 H 0.02 1.10 7.03 -2.38 -0.02 1.08 16 45 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 46 H 0.05 2.19 7.01 -2.38 -0.02 2.17 16 47 H 0.06 2.41 6.50 -2.38 -0.02 2.39 16 48 H 0.16 3.52 6.32 -2.91 -0.02 3.51 16 Total: -1.00 -84.57 380.48 3.50 -81.07 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.96 Total: 8.77 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 7.42 Total: 18.94 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.89 Total: -126.09 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.02 Total: -31.75 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -84.57 3.50 -81.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027545873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.033 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds