Wall clock time and date at job start Tue Mar 31 2020 17:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00078 * 2 1 4 4 H 1.07997 * 119.99790 * 201.99854 * 3 2 1 5 5 C 1.38810 * 119.99957 * 22.00311 * 3 2 1 6 6 N 1.31615 * 120.00198 * 12.68429 * 5 3 2 7 7 Si 1.86803 * 119.99790 * 192.67953 * 5 3 2 8 8 H 1.48505 * 109.46653 * 90.00447 * 7 5 3 9 9 H 1.48498 * 109.46950 * 209.99790 * 7 5 3 10 10 H 1.48494 * 109.47406 * 330.00469 * 7 5 3 11 11 C 1.46499 * 119.99671 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.52342 * 180.08264 * 11 2 1 13 13 C 1.53040 * 109.49840 * 300.15980 * 11 2 1 14 14 C 1.53037 * 109.53874 * 181.32116 * 13 11 2 15 15 C 1.53623 * 109.24151 * 298.50735 * 14 13 11 16 16 N 1.46928 * 108.54263 * 54.85569 * 15 14 13 17 17 C 1.34777 * 120.62633 * 126.36533 * 16 15 14 18 18 O 1.21280 * 119.99504 * 179.71951 * 17 16 15 19 19 C 1.50696 * 120.00199 * 359.72958 * 17 16 15 20 20 C 1.53004 * 109.46848 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46780 * 179.97438 * 20 19 17 22 22 C 1.38831 * 120.35506 * 89.99935 * 21 20 19 23 23 C 1.38382 * 118.48543 * 180.02562 * 22 21 20 24 24 C 1.38924 * 119.10878 * 0.25461 * 23 22 21 25 25 O 1.35671 * 119.68036 * 179.74441 * 24 23 22 26 26 N 1.32249 * 120.62982 * 359.49671 * 24 23 22 27 27 C 1.31954 * 121.64889 * 0.49156 * 26 24 23 28 28 C 1.46917 * 118.73924 * 306.09841 * 16 15 14 29 29 H 1.09002 * 109.47080 * 274.32760 * 1 2 3 30 30 H 1.09004 * 109.46707 * 34.32273 * 1 2 3 31 31 H 1.09000 * 109.47361 * 154.32475 * 1 2 3 32 32 H 0.96999 * 119.99957 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.46017 * 301.33691 * 13 11 2 34 34 H 1.08997 * 109.46118 * 61.31029 * 13 11 2 35 35 H 1.09002 * 109.50105 * 58.58745 * 14 13 11 36 36 H 1.09001 * 109.49705 * 178.64923 * 14 13 11 37 37 H 1.09002 * 109.73763 * 295.12102 * 15 14 13 38 38 H 1.08997 * 109.66828 * 174.54994 * 15 14 13 39 39 H 1.08990 * 109.47470 * 59.99692 * 19 17 16 40 40 H 1.09001 * 109.47156 * 299.99135 * 19 17 16 41 41 H 1.08994 * 109.47700 * 59.99648 * 20 19 17 42 42 H 1.08992 * 109.46853 * 299.99465 * 20 19 17 43 43 H 1.07999 * 120.75873 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.44634 * 179.97438 * 23 22 21 45 45 H 0.96706 * 114.00325 * 89.99909 * 25 24 23 46 46 H 1.08009 * 119.58274 * 179.75097 * 27 26 24 47 47 H 1.09004 * 109.58821 * 173.64451 * 28 16 15 48 48 H 1.09002 * 109.59070 * 294.07088 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1707 1.2199 -0.3503 5 6 1.5315 2.3442 0.4504 6 7 0.3917 2.2703 1.1043 7 14 2.3175 4.0080 0.1285 8 1 1.8259 4.5455 -1.1656 9 1 1.9574 4.9454 1.2225 10 1 3.7935 3.8558 0.0727 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0706 0.0010 13 6 1.8251 -2.0741 1.2464 14 6 2.6144 -3.3851 1.2636 15 6 2.2449 -4.2148 0.0246 16 7 2.4680 -3.3921 -1.1722 17 6 3.2409 -3.8422 -2.1804 18 8 3.4133 -3.1556 -3.1652 19 6 3.8908 -5.1984 -2.0841 20 6 4.7063 -5.4642 -3.3512 21 6 5.3566 -6.8202 -3.2546 22 6 4.6985 -7.9490 -3.7237 23 6 5.3313 -9.1749 -3.6152 24 6 6.5941 -9.2349 -3.0391 25 8 7.2230 -10.4313 -2.9222 26 7 7.1909 -8.1363 -2.6080 27 6 6.6130 -6.9534 -2.6982 28 6 1.8278 -2.0721 -1.2515 29 1 -0.3633 0.0775 1.0248 30 1 -0.3633 0.8488 -0.5795 31 1 -0.3634 -0.9262 -0.4452 32 1 -0.0401 3.0798 1.4193 33 1 2.0646 -1.4944 2.1379 34 1 0.7575 -2.2933 1.2317 35 1 3.6824 -3.1670 1.2532 36 1 2.3667 -3.9472 2.1640 37 1 1.1961 -4.5071 0.0767 38 1 2.8726 -5.1047 -0.0216 39 1 3.1214 -5.9634 -1.9805 40 1 4.5491 -5.2250 -1.2158 41 1 5.4756 -4.6992 -3.4553 42 1 4.0477 -5.4377 -4.2192 43 1 3.7146 -7.8723 -4.1625 44 1 4.8482 -10.0734 -3.9695 45 1 7.7734 -10.6624 -3.6830 46 1 7.1293 -6.0784 -2.3318 47 1 2.1802 -1.5478 -2.1398 48 1 0.7457 -2.1932 -1.3013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027546858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:00 Heat of formation + Delta-G solvation = -45.496312 kcal Electronic energy + Delta-G solvation = -28332.766973 eV Core-core repulsion = 24387.484944 eV Total energy + Delta-G solvation = -3945.282029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53951 -41.09951 -38.98373 -38.17470 -36.75020 -35.12991 -33.93889 -33.04549 -32.82717 -31.00028 -29.85752 -28.06936 -26.77059 -25.56860 -24.83036 -24.64414 -23.02538 -22.60449 -20.91394 -19.77138 -19.75776 -18.78748 -18.23912 -17.92427 -17.11713 -16.94402 -16.70019 -16.48040 -16.01862 -15.68408 -15.41420 -15.23423 -15.10453 -14.63197 -14.54645 -14.41524 -14.21877 -14.08361 -13.73763 -13.67569 -13.58054 -13.03555 -12.88846 -12.86255 -12.77818 -12.54168 -12.48857 -12.29226 -12.09889 -11.99700 -11.91690 -11.77441 -11.67115 -11.37987 -10.86183 -10.76333 -10.65346 -10.37024 -9.71372 -9.66214 -8.76888 -7.84808 -5.32478 0.00760 0.28194 1.43474 1.45348 1.53574 1.68632 2.03702 2.49543 2.57493 2.86709 3.27830 3.47873 3.62623 3.77215 3.93060 3.94458 4.01276 4.03870 4.09211 4.14102 4.22150 4.28708 4.33176 4.38928 4.50380 4.60103 4.69038 4.74913 4.78450 4.80145 4.89983 4.93017 4.96606 5.04643 5.06085 5.16336 5.21042 5.28342 5.36621 5.45339 5.50176 5.54879 5.62877 5.63880 5.71852 6.30925 6.52863 6.65468 6.97178 7.13160 7.23974 7.85296 8.27264 9.17683 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.002106 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.633909 B =13293.258911 C =13628.531332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.062 0.938 5 C -0.051 4.051 6 N -0.935 5.935 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.272 1.272 11 C 0.167 3.833 12 H 0.044 0.956 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.106 3.894 16 N -0.608 5.608 17 C 0.505 3.495 18 O -0.592 6.592 19 C -0.122 4.122 20 C -0.054 4.054 21 C -0.136 4.136 22 C -0.053 4.053 23 C -0.179 4.179 24 C 0.286 3.714 25 O -0.497 6.497 26 N -0.535 5.535 27 C 0.117 3.883 28 C 0.113 3.887 29 H 0.007 0.993 30 H 0.013 0.987 31 H 0.030 0.970 32 H 0.249 0.751 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.418 0.582 46 H 0.169 0.831 47 H 0.056 0.944 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 -27.164 -7.102 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.080 0.920 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.197 1.197 11 C 0.059 3.941 12 H 0.062 0.938 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.296 3.704 18 O -0.473 6.473 19 C -0.162 4.162 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.078 4.078 23 C -0.200 4.200 24 C 0.108 3.892 25 O -0.307 6.307 26 N -0.254 5.254 27 C -0.039 4.039 28 C -0.012 4.012 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.182 0.818 44 H 0.180 0.820 45 H 0.278 0.722 46 H 0.186 0.814 47 H 0.074 0.926 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.871 -26.850 -6.652 28.760 hybrid contribution -0.340 1.731 -0.689 1.894 sum 7.531 -25.119 -7.341 27.232 Atomic orbital electron populations 1.20485 0.82554 0.95729 0.97596 1.44109 1.02163 1.01064 1.86029 1.19479 0.97707 0.86776 1.35404 0.91995 1.25711 0.98589 1.01566 0.98734 1.70216 1.19701 1.27397 1.40842 0.85274 0.78289 0.80009 0.76928 1.21408 1.21759 1.19667 1.20720 0.94747 0.85267 0.93341 0.93804 1.21939 1.00219 0.96457 0.97674 1.21971 1.00068 0.95188 0.99039 1.22154 1.03349 0.93715 0.82335 1.48306 1.48653 1.17601 1.19486 1.21447 0.77892 0.89500 0.81583 1.90690 1.63088 1.60390 1.33091 1.21711 1.01124 0.92547 1.00788 1.20147 0.99191 0.92164 0.97707 1.20857 0.95839 0.96540 1.00619 1.21785 1.00499 0.90547 0.95008 1.22335 0.95879 1.00472 1.01311 1.19513 0.90615 0.84779 0.94295 1.84737 1.66497 1.30782 1.48682 1.67167 1.39302 0.99716 1.19203 1.22690 0.92477 0.93837 0.94930 1.21857 0.96903 0.83338 0.99116 0.97492 0.96839 0.95121 0.94204 0.94237 0.92415 0.91894 0.88150 0.89807 0.86110 0.85951 0.86721 0.90816 0.90136 0.81766 0.81954 0.72181 0.81412 0.92578 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.97 8.03 127.77 1.03 9.99 16 2 N -0.61 -31.00 2.82 -702.33 -1.98 -32.98 16 3 C -0.26 -14.92 9.60 84.03 0.81 -14.12 16 4 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 5 C -0.05 -2.91 5.10 84.86 0.43 -2.47 16 6 N -0.93 -55.73 10.64 21.65 0.23 -55.50 16 7 Si 0.97 46.31 29.57 68.60 2.03 48.33 16 8 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 C 0.17 6.78 2.74 45.07 0.12 6.90 16 12 H 0.04 1.93 7.86 -2.39 -0.02 1.91 16 13 C -0.12 -4.10 5.14 30.62 0.16 -3.94 16 14 C -0.12 -2.68 6.10 30.82 0.19 -2.49 16 15 C 0.11 1.86 6.37 86.51 0.55 2.41 16 16 N -0.61 -16.05 2.97 -818.08 -2.43 -18.48 16 17 C 0.51 13.14 7.70 87.66 0.67 13.81 16 18 O -0.59 -21.19 15.39 -3.03 -0.05 -21.24 16 19 C -0.12 -1.77 4.03 29.85 0.12 -1.65 16 20 C -0.05 -0.81 4.66 29.85 0.14 -0.67 16 21 C -0.14 -1.82 5.15 -19.77 -0.10 -1.92 16 22 C -0.05 -0.56 9.85 22.45 0.22 -0.34 16 23 C -0.18 -2.05 10.04 22.47 0.23 -1.82 16 24 C 0.29 4.71 7.74 84.79 0.66 5.37 16 25 O -0.50 -7.06 13.56 -89.88 -1.22 -8.28 16 26 N -0.53 -10.61 10.39 -308.95 -3.21 -13.82 16 27 C 0.12 1.89 10.85 84.63 0.92 2.81 16 28 C 0.11 4.04 5.78 86.36 0.50 4.54 16 29 H 0.01 0.37 7.41 -2.39 -0.02 0.35 16 30 H 0.01 0.71 7.21 -2.38 -0.02 0.69 16 31 H 0.03 1.28 6.36 -2.39 -0.02 1.26 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.90 7.71 -2.39 -0.02 1.88 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 1.20 5.93 -2.39 -0.01 1.18 16 39 H 0.12 1.11 7.93 -2.39 -0.02 1.09 16 40 H 0.11 1.28 7.70 -2.39 -0.02 1.26 16 41 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 42 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 43 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.42 1.76 9.06 -74.05 -0.67 1.09 16 46 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 47 H 0.06 2.39 7.01 -2.38 -0.02 2.37 16 48 H 0.06 2.24 6.50 -2.39 -0.02 2.23 16 Total: -1.00 -78.85 385.19 0.32 -78.54 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.30 Total: 7.00 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.64 Total: 16.42 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -7.38 Total: -120.77 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.27 Total: -29.52 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.85 0.32 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027546858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.041 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds