Wall clock time and date at job start Tue Mar 31 2020 17:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36937 * 120.00130 * 2 1 4 4 H 1.07999 * 119.99805 * 204.16013 * 3 2 1 5 5 C 1.38808 * 119.99804 * 24.15692 * 3 2 1 6 6 N 1.31619 * 120.00620 * 15.51917 * 5 3 2 7 7 Si 1.86800 * 119.99858 * 195.52001 * 5 3 2 8 8 H 1.48499 * 109.47298 * 89.99943 * 7 5 3 9 9 H 1.48497 * 109.47249 * 210.00126 * 7 5 3 10 10 H 1.48500 * 109.47381 * 330.00150 * 7 5 3 11 11 C 1.46505 * 119.99780 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49544 * 179.97438 * 11 2 1 13 13 C 1.53045 * 109.49649 * 300.00168 * 11 2 1 14 14 C 1.53040 * 109.53430 * 181.31838 * 13 11 2 15 15 C 1.53195 * 109.31170 * 298.63198 * 14 13 11 16 16 N 1.46925 * 108.89081 * 54.56723 * 15 14 13 17 17 C 1.34782 * 120.62734 * 126.45956 * 16 15 14 18 18 O 1.21612 * 120.00114 * 352.99993 * 17 16 15 19 19 C 1.47423 * 119.99554 * 173.00011 * 17 16 15 20 20 C 1.36093 * 126.44561 * 173.52843 * 19 17 16 21 21 O 1.34255 * 106.94735 * 179.90053 * 20 19 17 22 22 C 1.34054 * 108.22923 * 0.36413 * 21 20 19 23 23 C 1.50697 * 125.37968 * 179.73070 * 22 21 20 24 24 C 1.53786 * 113.61343 * 37.54163 * 23 22 21 25 25 C 1.53781 * 87.08015 * 220.01766 * 24 23 22 26 26 C 1.53777 * 87.08267 * 25.43077 * 25 24 23 27 27 N 1.29933 * 109.23811 * 359.76859 * 22 21 20 28 28 C 1.46959 * 118.71882 * 306.63828 * 16 15 14 29 29 H 1.08998 * 109.47327 * 272.78365 * 1 2 3 30 30 H 1.09000 * 109.47211 * 32.78413 * 1 2 3 31 31 H 1.09000 * 109.46746 * 152.78057 * 1 2 3 32 32 H 0.96993 * 120.00661 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.45997 * 61.30048 * 13 11 2 34 34 H 1.08998 * 109.45715 * 301.33498 * 13 11 2 35 35 H 1.08998 * 109.49826 * 178.68358 * 14 13 11 36 36 H 1.09003 * 109.52575 * 58.60281 * 14 13 11 37 37 H 1.09004 * 109.58259 * 174.42219 * 15 14 13 38 38 H 1.08988 * 109.58842 * 294.70712 * 15 14 13 39 39 H 1.08002 * 126.52794 * 0.02914 * 20 19 17 40 40 H 1.08999 * 112.84885 * 168.84398 * 23 22 21 41 41 H 1.09004 * 113.61101 * 334.56591 * 24 23 22 42 42 H 1.09000 * 113.61286 * 105.46922 * 24 23 22 43 43 H 1.09004 * 113.60932 * 270.88391 * 25 24 23 44 44 H 1.09000 * 113.61196 * 139.98545 * 25 24 23 45 45 H 1.08994 * 113.61729 * 220.02100 * 26 25 24 46 46 H 1.09001 * 113.69068 * 89.12578 * 26 25 24 47 47 H 1.09001 * 109.46803 * 293.57665 * 28 16 15 48 48 H 1.09000 * 109.59833 * 173.21617 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1588 1.2268 -0.3828 5 6 1.5469 2.3354 0.4920 6 7 0.4596 2.2449 1.2282 7 14 2.2786 4.0109 0.1091 8 1 1.6843 4.5354 -1.1466 9 1 1.9845 4.9461 1.2244 10 1 3.7490 3.8831 -0.0550 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8281 -2.0713 1.2503 14 6 2.6175 -3.3823 1.2685 15 6 2.2495 -4.2123 0.0346 16 7 2.4627 -3.3964 -1.1685 17 6 3.2316 -3.8500 -2.1783 18 8 3.8584 -4.8840 -2.0484 19 6 3.3127 -3.0925 -3.4405 20 6 4.1350 -3.3586 -4.4917 21 8 3.8847 -2.4307 -5.4291 22 6 2.9356 -1.6075 -4.9614 23 6 2.3672 -0.4228 -5.6991 24 6 2.2004 -0.6596 -7.2094 25 6 2.6940 0.7829 -7.4104 26 6 3.4184 0.6395 -6.0615 27 7 2.5837 -1.9922 -3.7713 28 6 1.8248 -2.0749 -1.2477 29 1 -0.3634 0.0499 1.0264 30 1 -0.3633 0.8640 -0.5564 31 1 -0.3633 -0.9139 -0.4701 32 1 0.0386 3.0480 1.5723 33 1 0.7605 -2.2904 1.2387 34 1 2.0698 -1.4896 2.1399 35 1 2.3715 -3.9426 2.1705 36 1 3.6855 -3.1647 1.2553 37 1 2.8801 -5.1004 -0.0096 38 1 1.2027 -4.5101 0.0934 39 1 4.8510 -4.1643 -4.5599 40 1 1.4787 -0.0120 -5.2195 41 1 2.8784 -1.4130 -7.6107 42 1 1.1657 -0.8137 -7.5156 43 1 1.8942 1.5234 -7.3999 44 1 3.3689 0.8993 -8.2584 45 1 3.3670 1.5341 -5.4410 46 1 4.4295 0.2416 -6.1476 47 1 0.7426 -2.1961 -1.2947 48 1 2.1751 -1.5526 -2.1380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027643302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:19 Heat of formation + Delta-G solvation = 25.555492 kcal Electronic energy + Delta-G solvation = -29997.791700 eV Core-core repulsion = 26055.590708 eV Total energy + Delta-G solvation = -3942.200992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55415 -41.14674 -39.53516 -38.93433 -36.64435 -36.09195 -33.84631 -33.10320 -31.69923 -30.36597 -28.01692 -27.36711 -26.73128 -26.57553 -25.33287 -24.66452 -23.17409 -22.40250 -21.51251 -20.63600 -19.78049 -18.89754 -18.48117 -18.01836 -17.84017 -17.01839 -16.92033 -16.64057 -16.17628 -16.07854 -15.72176 -15.38144 -15.17087 -14.91953 -14.70880 -14.44324 -14.02476 -13.78084 -13.74402 -13.62486 -13.49902 -13.33268 -12.91748 -12.81830 -12.55293 -12.45050 -12.31218 -12.23142 -12.05873 -11.93154 -11.92337 -11.70796 -11.54017 -11.46769 -11.42356 -11.38216 -10.78768 -10.54442 -10.09570 -9.69823 -8.71071 -7.81786 -5.29931 0.03222 0.86789 1.46341 1.46922 1.50970 1.55876 1.86582 2.14776 2.51343 2.76066 3.30674 3.37284 3.54918 3.65496 3.72674 3.81648 3.91691 3.96321 3.99569 4.04884 4.15964 4.25239 4.37433 4.45497 4.54083 4.60446 4.64746 4.73546 4.76944 4.78241 4.86969 4.89129 4.91736 4.99114 5.05451 5.06202 5.11028 5.13491 5.20674 5.26195 5.42504 5.46818 5.50756 5.61969 5.68611 5.73777 6.21247 6.35446 6.49643 6.96823 7.16238 7.87317 8.32845 9.21256 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.005307 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.932590 B = 5274.853437 C = 8193.969632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.261 4.261 4 H 0.060 0.940 5 C -0.046 4.046 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.282 1.282 9 H -0.295 1.295 10 H -0.273 1.273 11 C 0.168 3.832 12 H 0.040 0.960 13 C -0.124 4.124 14 C -0.118 4.118 15 C 0.110 3.890 16 N -0.590 5.590 17 C 0.598 3.402 18 O -0.568 6.568 19 C -0.103 4.103 20 C 0.031 3.969 21 O -0.187 6.187 22 C 0.214 3.786 23 C -0.034 4.034 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.134 4.134 27 N -0.480 5.480 28 C 0.083 3.917 29 H 0.003 0.997 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.248 0.752 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.263 0.737 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.056 0.944 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -9.618 -16.258 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.324 5.324 3 C -0.391 4.391 4 H 0.078 0.922 5 C -0.241 4.241 6 N -0.580 5.580 7 Si 0.792 3.208 8 H -0.208 1.208 9 H -0.222 1.222 10 H -0.198 1.198 11 C 0.060 3.940 12 H 0.058 0.942 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.011 4.011 16 N -0.320 5.320 17 C 0.387 3.613 18 O -0.449 6.449 19 C -0.222 4.222 20 C -0.043 4.043 21 O -0.073 6.073 22 C 0.006 3.994 23 C -0.053 4.053 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.172 4.172 27 N -0.209 5.209 28 C -0.041 4.041 29 H 0.021 0.979 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.278 0.722 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.074 0.926 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.213 -9.724 -15.737 18.973 hybrid contribution 0.499 0.803 0.366 1.014 sum 4.711 -8.922 -15.371 18.386 Atomic orbital electron populations 1.20453 0.82733 0.95947 0.97280 1.43982 1.01893 1.00719 1.85812 1.19396 0.98984 0.86841 1.33856 0.92192 1.25692 0.98962 1.01553 0.97926 1.70219 1.23254 1.27793 1.36693 0.85329 0.78258 0.80158 0.77094 1.20846 1.22156 1.19759 1.20687 0.94547 0.85614 0.93113 0.94153 1.21975 0.99924 0.95954 0.98547 1.21831 0.99895 0.95672 0.98295 1.21794 1.02359 0.94091 0.82871 1.48040 1.47781 1.18748 1.17476 1.17033 0.78651 0.83548 0.82116 1.90738 1.46321 1.25438 1.82451 1.21805 1.02690 0.98830 0.98839 1.25790 0.99759 0.93408 0.85335 1.84362 1.47294 1.33529 1.42097 1.26809 0.88229 0.94771 0.89610 1.21642 1.00277 0.87795 0.95633 1.23005 1.03551 0.98693 0.90647 1.22788 1.00524 0.96354 0.96698 1.23057 0.97878 0.97677 0.98600 1.70692 1.26102 1.11293 1.12790 1.23028 0.97132 0.81551 1.02434 0.97871 0.96487 0.95355 0.94233 0.92453 0.93951 0.88263 0.92518 0.88676 0.90017 0.72162 0.85399 0.88935 0.89278 0.88689 0.89160 0.90828 0.89460 0.92608 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 8.07 127.77 1.03 10.01 16 2 N -0.60 -30.54 2.81 -702.32 -1.97 -32.51 16 3 C -0.26 -14.52 9.55 84.03 0.80 -13.72 16 4 H 0.06 3.34 7.85 -2.91 -0.02 3.31 16 5 C -0.05 -2.57 5.02 84.86 0.43 -2.14 16 6 N -0.93 -55.23 10.95 21.65 0.24 -54.99 16 7 Si 0.96 45.10 29.58 68.60 2.03 47.13 16 8 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 9 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.17 7.21 2.75 45.07 0.12 7.33 16 12 H 0.04 1.87 7.87 -2.39 -0.02 1.85 16 13 C -0.12 -4.67 5.15 30.62 0.16 -4.51 16 14 C -0.12 -3.46 6.08 30.67 0.19 -3.28 16 15 C 0.11 3.17 6.44 86.36 0.56 3.73 16 16 N -0.59 -20.03 2.98 -822.69 -2.45 -22.48 16 17 C 0.60 20.39 7.68 86.66 0.67 21.05 16 18 O -0.57 -20.32 16.32 -4.07 -0.07 -20.39 16 19 C -0.10 -3.19 6.68 40.41 0.27 -2.92 16 20 C 0.03 0.72 11.95 67.32 0.80 1.53 16 21 O -0.19 -4.25 10.39 0.36 0.00 -4.25 16 22 C 0.21 5.56 7.33 88.39 0.65 6.21 16 23 C -0.03 -0.70 4.29 -11.01 -0.05 -0.74 16 24 C -0.12 -1.67 7.62 31.12 0.24 -1.44 16 25 C -0.13 -1.56 8.08 31.12 0.25 -1.31 16 26 C -0.13 -2.36 7.63 31.12 0.24 -2.12 16 27 N -0.48 -15.43 7.82 -293.03 -2.29 -17.72 16 28 C 0.08 3.13 5.46 86.36 0.47 3.60 16 29 H 0.00 0.16 7.45 -2.39 -0.02 0.15 16 30 H 0.02 0.89 7.33 -2.39 -0.02 0.87 16 31 H 0.03 1.22 6.34 -2.39 -0.02 1.20 16 32 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.06 2.13 7.72 -2.39 -0.02 2.11 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.64 7.00 -2.38 -0.02 2.62 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.26 3.96 8.06 -2.91 -0.02 3.94 16 40 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.09 1.22 7.82 -2.39 -0.02 1.20 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 47 H 0.06 2.15 6.48 -2.39 -0.02 2.13 16 48 H 0.13 5.23 4.10 -20.02 -0.08 5.15 16 Total: -1.00 -69.49 379.64 3.20 -66.29 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.89 Total: 17.65 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.82 Total: 21.28 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.48 Total: -127.71 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.49 3.20 -66.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027643302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.843 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds