Wall clock time and date at job start Tue Mar 31 2020 17:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 120.00341 * 2 1 4 4 O 1.21607 * 120.00104 * 185.25961 * 3 2 1 5 5 C 1.47398 * 120.00028 * 5.26275 * 3 2 1 6 6 C 1.37362 * 128.56452 * 320.73363 * 5 3 2 7 7 O 1.33495 * 106.34040 * 179.97438 * 6 5 3 8 8 N 1.20656 * 113.15636 * 0.02562 * 7 6 5 9 9 C 1.30015 * 112.30145 * 359.73313 * 8 7 6 10 10 C 1.50702 * 127.33215 * 180.27477 * 9 8 7 11 11 C 1.54266 * 110.03174 * 58.05569 * 10 9 8 12 12 C 1.54967 * 104.15775 * 217.13459 * 11 10 9 13 13 C 1.54884 * 102.77678 * 37.89106 * 12 11 10 14 14 C 1.53872 * 110.03237 * 300.83571 * 10 9 8 15 15 C 1.46504 * 119.99668 * 180.02562 * 2 1 3 16 16 H 1.09006 * 110.64052 * 188.85481 * 15 2 1 17 17 C 1.55157 * 110.72297 * 65.71266 * 15 2 1 18 18 C 1.54906 * 101.58021 * 277.14004 * 17 15 2 19 19 N 1.47425 * 104.93065 * 322.93302 * 18 17 15 20 20 C 1.36930 * 125.64965 * 204.15709 * 19 18 17 21 21 H 1.08004 * 120.00117 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99887 * 0.02562 * 20 19 18 23 23 N 1.31613 * 120.00301 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46576 * 60.00408 * 24 22 20 26 26 H 1.48494 * 109.47061 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47280 * 300.00585 * 24 22 20 28 28 C 1.47295 * 108.55662 * 24.15523 * 19 18 17 29 29 H 1.08996 * 109.47504 * 204.47667 * 1 2 3 30 30 H 1.09005 * 109.46807 * 324.47108 * 1 2 3 31 31 H 1.09000 * 109.47539 * 84.46881 * 1 2 3 32 32 H 1.07998 * 126.82633 * 359.96756 * 6 5 3 33 33 H 1.08996 * 110.01701 * 179.44419 * 10 9 8 34 34 H 1.08999 * 110.49406 * 335.78157 * 11 10 9 35 35 H 1.09003 * 110.48405 * 98.43012 * 11 10 9 36 36 H 1.08997 * 110.72099 * 279.57523 * 12 11 10 37 37 H 1.08999 * 110.92118 * 156.29960 * 12 11 10 38 38 H 1.09003 * 110.48430 * 203.40455 * 13 12 11 39 39 H 1.08992 * 110.49036 * 80.76143 * 13 12 11 40 40 H 1.09001 * 110.03424 * 238.57101 * 14 10 9 41 41 H 1.08997 * 110.03104 * 0.02562 * 14 10 9 42 42 H 1.09000 * 111.00580 * 159.06283 * 17 15 2 43 43 H 1.09007 * 111.03623 * 35.22918 * 17 15 2 44 44 H 1.09004 * 110.36571 * 81.82935 * 18 17 15 45 45 H 1.09004 * 110.36337 * 204.03691 * 18 17 15 46 46 H 0.97006 * 120.00291 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.85849 * 239.50202 * 28 19 18 48 48 H 1.09004 * 109.87038 * 118.35572 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3511 1.1693 -0.0965 5 6 1.4066 2.4410 0.1171 6 6 0.2086 2.7956 -0.4537 7 8 -0.0424 4.0446 -0.0548 8 7 0.8158 4.4946 0.6642 9 6 1.7759 3.6444 0.8783 10 6 3.0062 3.8491 1.7241 11 6 2.6006 4.1978 3.1711 12 6 3.6562 5.2398 3.6200 13 6 3.8768 6.0785 2.3367 14 6 3.8176 5.0441 1.1938 15 6 2.1974 -1.2688 -0.0006 16 1 3.2624 -1.0977 0.1565 17 6 1.9549 -2.0421 -1.3237 18 6 0.6057 -2.7445 -1.0306 19 7 0.6748 -3.1209 0.3931 20 6 -0.0320 -4.1325 0.9864 21 1 0.0892 -4.3295 2.0414 22 6 -0.9044 -4.9049 0.2318 23 7 -1.0517 -4.6652 -1.0539 24 14 -1.8682 -6.2855 1.0410 25 1 -2.7240 -5.7263 2.1181 26 1 -2.7229 -6.9530 0.0267 27 1 -0.9243 -7.2739 1.6217 28 6 1.6309 -2.2268 1.0685 29 1 -0.3634 -0.9352 0.4258 30 1 -0.3633 0.8364 0.5972 31 1 -0.3634 0.0991 -1.0228 32 1 -0.4076 2.1854 -1.0973 33 1 3.6193 2.9480 1.7151 34 1 1.6016 4.6333 3.1930 35 1 2.6453 3.3114 3.8039 36 1 4.5800 4.7470 3.9229 37 1 3.2698 5.8625 4.4268 38 1 4.8523 6.5643 2.3615 39 1 3.0842 6.8181 2.2233 40 1 4.8249 4.7231 0.9281 41 1 3.3213 5.4762 0.3249 42 1 2.7451 -2.7719 -1.5001 43 1 1.8637 -1.3567 -2.1664 44 1 -0.2240 -2.0586 -1.2018 45 1 0.4974 -3.6327 -1.6530 46 1 -1.6616 -5.2047 -1.5811 47 1 2.4389 -2.8122 1.5073 48 1 1.1201 -1.6562 1.8442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033140051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:50 Heat of formation + Delta-G solvation = 54.730275 kcal Electronic energy + Delta-G solvation = -29624.741933 eV Core-core repulsion = 25683.806055 eV Total energy + Delta-G solvation = -3940.935878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.00166 -39.91842 -38.46582 -37.43030 -34.63495 -33.78078 -32.53948 -31.58322 -29.34511 -28.92018 -28.89728 -27.89795 -26.61716 -25.00536 -23.88983 -22.65728 -21.06116 -20.81668 -20.20001 -19.77531 -19.03976 -17.85217 -17.57516 -17.03317 -16.81080 -16.18877 -15.96037 -15.23934 -15.08795 -14.75592 -14.37457 -13.87867 -13.80449 -13.65995 -13.56353 -12.92296 -12.74537 -12.39150 -12.12460 -12.08413 -11.88759 -11.81234 -11.60552 -11.37653 -11.31669 -11.24460 -11.13205 -10.95753 -10.89777 -10.86986 -10.76290 -10.44549 -10.21171 -9.99579 -9.92331 -9.86804 -9.63067 -9.60923 -8.75474 -8.38281 -6.94193 -5.73654 -3.16371 1.09297 1.72020 2.72573 2.98153 3.27282 3.35302 3.40311 3.40941 3.85786 4.12619 4.41737 4.42292 4.46373 4.68625 4.77034 4.89273 5.17199 5.22307 5.28792 5.29871 5.34772 5.35943 5.39336 5.43984 5.45439 5.49926 5.60486 5.62598 5.68628 5.70798 5.76625 5.81842 5.91807 5.98473 6.08696 6.11189 6.16844 6.24173 6.28687 6.46845 6.51860 6.62882 6.90954 7.38483 7.53318 7.54527 7.76818 8.10182 8.21647 8.26946 9.12924 9.73074 10.37202 11.29515 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.002740 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.234421 B =10217.091593 C =10354.411819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.584 5.584 3 C 0.591 3.409 4 O -0.536 6.536 5 C -0.241 4.241 6 C -0.013 4.013 7 O 0.095 5.905 8 N -0.356 5.356 9 C 0.075 3.925 10 C -0.017 4.017 11 C -0.116 4.116 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.112 4.112 15 C 0.128 3.872 16 H 0.100 0.900 17 C -0.155 4.155 18 C 0.147 3.853 19 N -0.602 5.602 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.126 3.874 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.227 0.773 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.106 0.894 46 H 0.253 0.747 47 H 0.036 0.964 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 18.225 2.963 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.315 5.315 3 C 0.378 3.622 4 O -0.414 6.414 5 C -0.248 4.248 6 C -0.094 4.094 7 O 0.034 5.966 8 N -0.062 5.062 9 C -0.088 4.088 10 C -0.037 4.037 11 C -0.154 4.154 12 C -0.161 4.161 13 C -0.160 4.160 14 C -0.150 4.150 15 C 0.025 3.975 16 H 0.118 0.882 17 C -0.194 4.194 18 C 0.022 3.978 19 N -0.329 5.329 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.000 4.000 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.124 0.876 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.404 19.271 3.236 20.274 hybrid contribution -0.490 -1.619 0.065 1.693 sum 4.913 17.651 3.300 18.617 Atomic orbital electron populations 1.22244 0.79144 1.05200 1.01435 1.47674 1.07406 1.05210 1.71189 1.16916 0.86406 0.81912 0.76979 1.90769 1.13282 1.86940 1.50430 1.22358 0.98004 0.97774 1.06700 1.26604 0.96403 0.86758 0.99684 1.84570 1.38638 1.25538 1.47822 1.73578 1.00348 1.21954 1.10275 1.24684 0.97164 0.88102 0.98843 1.20353 0.90025 1.00845 0.92439 1.22478 0.99632 0.99345 0.93992 1.22496 0.98945 0.97178 0.97434 1.22362 1.01607 0.97657 0.94419 1.22161 1.00036 0.94358 0.98451 1.22202 0.96144 0.81560 0.97618 0.88170 1.23384 1.01949 0.98815 0.95270 1.22060 0.89928 0.99186 0.86595 1.44603 1.47681 1.35432 1.05205 1.19010 1.16764 1.06253 0.93273 0.90533 1.24770 0.99964 0.99752 0.95899 1.69778 1.40162 1.41789 1.05224 0.86159 0.79580 0.81807 0.77970 1.21214 1.21571 1.21147 1.21666 0.93327 0.91343 0.93683 0.87416 0.92127 0.92483 0.75655 0.87862 0.91078 0.91061 0.91192 0.91351 0.91507 0.91513 0.90907 0.91648 0.90958 0.92060 0.96420 0.87588 0.93620 0.94619 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 7.14 59.84 0.43 1.32 16 2 N -0.58 -9.24 2.84 -173.11 -0.49 -9.73 16 3 C 0.59 9.40 7.58 -12.53 -0.10 9.31 16 4 O -0.54 -9.92 15.83 5.27 0.08 -9.83 16 5 C -0.24 -3.26 5.64 -102.89 -0.58 -3.84 16 6 C -0.01 -0.14 10.14 30.41 0.31 0.17 16 7 O 0.09 1.10 11.06 18.65 0.21 1.31 16 8 N -0.36 -4.62 11.85 34.78 0.41 -4.21 16 9 C 0.07 0.99 5.79 -79.77 -0.46 0.52 16 10 C -0.02 -0.21 3.42 -90.65 -0.31 -0.52 16 11 C -0.12 -1.20 6.36 -25.03 -0.16 -1.36 16 12 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 13 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 14 C -0.11 -1.17 6.45 -25.61 -0.17 -1.34 16 15 C 0.13 2.25 3.54 -66.09 -0.23 2.01 16 16 H 0.10 1.76 7.08 -51.93 -0.37 1.40 16 17 C -0.15 -2.84 6.68 -24.58 -0.16 -3.00 16 18 C 0.15 3.26 5.04 -2.53 -0.01 3.25 16 19 N -0.60 -14.22 2.85 -169.85 -0.48 -14.71 16 20 C -0.22 -5.90 10.28 -15.06 -0.15 -6.05 16 21 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -25.36 10.09 55.49 0.56 -24.80 16 24 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.13 2.50 6.09 -2.91 -0.02 2.49 16 29 H 0.11 1.91 5.17 -51.93 -0.27 1.64 16 30 H 0.06 0.73 5.98 -51.93 -0.31 0.42 16 31 H 0.06 0.72 7.25 -51.93 -0.38 0.34 16 32 H 0.23 1.66 6.68 -52.49 -0.35 1.30 16 33 H 0.10 1.36 7.38 -51.93 -0.38 0.98 16 34 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.40 6.01 -51.93 -0.31 0.09 16 45 H 0.11 2.73 5.87 -51.93 -0.30 2.43 16 46 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.03 0.57 7.56 -51.93 -0.39 0.17 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -29.89 372.52 -8.39 -38.29 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.22 Total: 1.70 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.06 Total: 0.21 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.00 Total: -53.44 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.29 Total: -8.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.89 -8.39 -38.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033140051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.017 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds