Wall clock time and date at job start Tue Mar 31 2020 17:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 120.00341 * 2 1 4 4 O 1.21607 * 120.00104 * 185.25961 * 3 2 1 5 5 C 1.47398 * 120.00028 * 5.26275 * 3 2 1 6 6 C 1.37362 * 128.56452 * 320.73363 * 5 3 2 7 7 O 1.33495 * 106.34040 * 179.97438 * 6 5 3 8 8 N 1.20656 * 113.15636 * 0.02562 * 7 6 5 9 9 C 1.30015 * 112.30145 * 359.73313 * 8 7 6 10 10 C 1.50702 * 127.33215 * 180.27477 * 9 8 7 11 11 C 1.54266 * 110.03174 * 58.05569 * 10 9 8 12 12 C 1.54967 * 104.15775 * 217.13459 * 11 10 9 13 13 C 1.54884 * 102.77678 * 37.89106 * 12 11 10 14 14 C 1.53872 * 110.03237 * 300.83571 * 10 9 8 15 15 C 1.46504 * 119.99668 * 180.02562 * 2 1 3 16 16 H 1.09006 * 110.64052 * 188.85481 * 15 2 1 17 17 C 1.55157 * 110.72297 * 65.71266 * 15 2 1 18 18 C 1.54906 * 101.58021 * 277.14004 * 17 15 2 19 19 N 1.47425 * 104.93065 * 322.93302 * 18 17 15 20 20 C 1.36930 * 125.64965 * 204.15709 * 19 18 17 21 21 H 1.08004 * 120.00117 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99887 * 0.02562 * 20 19 18 23 23 N 1.31613 * 120.00301 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46576 * 60.00408 * 24 22 20 26 26 H 1.48494 * 109.47061 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47280 * 300.00585 * 24 22 20 28 28 C 1.47295 * 108.55662 * 24.15523 * 19 18 17 29 29 H 1.08996 * 109.47504 * 204.47667 * 1 2 3 30 30 H 1.09005 * 109.46807 * 324.47108 * 1 2 3 31 31 H 1.09000 * 109.47539 * 84.46881 * 1 2 3 32 32 H 1.07998 * 126.82633 * 359.96756 * 6 5 3 33 33 H 1.08996 * 110.01701 * 179.44419 * 10 9 8 34 34 H 1.08999 * 110.49406 * 335.78157 * 11 10 9 35 35 H 1.09003 * 110.48405 * 98.43012 * 11 10 9 36 36 H 1.08997 * 110.72099 * 279.57523 * 12 11 10 37 37 H 1.08999 * 110.92118 * 156.29960 * 12 11 10 38 38 H 1.09003 * 110.48430 * 203.40455 * 13 12 11 39 39 H 1.08992 * 110.49036 * 80.76143 * 13 12 11 40 40 H 1.09001 * 110.03424 * 238.57101 * 14 10 9 41 41 H 1.08997 * 110.03104 * 0.02562 * 14 10 9 42 42 H 1.09000 * 111.00580 * 159.06283 * 17 15 2 43 43 H 1.09007 * 111.03623 * 35.22918 * 17 15 2 44 44 H 1.09004 * 110.36571 * 81.82935 * 18 17 15 45 45 H 1.09004 * 110.36337 * 204.03691 * 18 17 15 46 46 H 0.97006 * 120.00291 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.85849 * 239.50202 * 28 19 18 48 48 H 1.09004 * 109.87038 * 118.35572 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3511 1.1693 -0.0965 5 6 1.4066 2.4410 0.1171 6 6 0.2086 2.7956 -0.4537 7 8 -0.0424 4.0446 -0.0548 8 7 0.8158 4.4946 0.6642 9 6 1.7759 3.6444 0.8783 10 6 3.0062 3.8491 1.7241 11 6 2.6006 4.1978 3.1711 12 6 3.6562 5.2398 3.6200 13 6 3.8768 6.0785 2.3367 14 6 3.8176 5.0441 1.1938 15 6 2.1974 -1.2688 -0.0006 16 1 3.2624 -1.0977 0.1565 17 6 1.9549 -2.0421 -1.3237 18 6 0.6057 -2.7445 -1.0306 19 7 0.6748 -3.1209 0.3931 20 6 -0.0320 -4.1325 0.9864 21 1 0.0892 -4.3295 2.0414 22 6 -0.9044 -4.9049 0.2318 23 7 -1.0517 -4.6652 -1.0539 24 14 -1.8682 -6.2855 1.0410 25 1 -2.7240 -5.7263 2.1181 26 1 -2.7229 -6.9530 0.0267 27 1 -0.9243 -7.2739 1.6217 28 6 1.6309 -2.2268 1.0685 29 1 -0.3634 -0.9352 0.4258 30 1 -0.3633 0.8364 0.5972 31 1 -0.3634 0.0991 -1.0228 32 1 -0.4076 2.1854 -1.0973 33 1 3.6193 2.9480 1.7151 34 1 1.6016 4.6333 3.1930 35 1 2.6453 3.3114 3.8039 36 1 4.5800 4.7470 3.9229 37 1 3.2698 5.8625 4.4268 38 1 4.8523 6.5643 2.3615 39 1 3.0842 6.8181 2.2233 40 1 4.8249 4.7231 0.9281 41 1 3.3213 5.4762 0.3249 42 1 2.7451 -2.7719 -1.5001 43 1 1.8637 -1.3567 -2.1664 44 1 -0.2240 -2.0586 -1.2018 45 1 0.4974 -3.6327 -1.6530 46 1 -1.6616 -5.2047 -1.5811 47 1 2.4389 -2.8122 1.5073 48 1 1.1201 -1.6562 1.8442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033140051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:49 Heat of formation + Delta-G solvation = 39.093410 kcal Electronic energy + Delta-G solvation = -29625.419999 eV Core-core repulsion = 25683.806055 eV Total energy + Delta-G solvation = -3941.613944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.98045 -41.25472 -39.34261 -38.89833 -36.09723 -34.83455 -34.05752 -32.85061 -31.05059 -29.79296 -29.69213 -29.40674 -27.95207 -26.58341 -25.30538 -23.55417 -22.31710 -21.96244 -21.57203 -20.67671 -20.35510 -18.97709 -18.83529 -18.57527 -18.03133 -17.44948 -16.78087 -16.69111 -16.34813 -16.18014 -15.62481 -15.59071 -14.93547 -14.60083 -14.33792 -14.31662 -14.18135 -13.79975 -13.62937 -13.43887 -13.17029 -12.93990 -12.93073 -12.77517 -12.74685 -12.44083 -12.19696 -12.07614 -12.07156 -12.02662 -11.98809 -11.79537 -11.66445 -11.54005 -11.43441 -11.17029 -10.86071 -10.71368 -10.66088 -9.73313 -8.86054 -7.74120 -5.17969 0.13332 0.71732 1.50350 1.51705 1.57230 1.58342 1.88143 2.21825 2.51617 2.89554 3.19816 3.36398 3.50573 3.64635 3.69619 3.78742 3.85918 3.91946 3.94240 4.02588 4.19874 4.29456 4.38331 4.43413 4.50285 4.51941 4.58029 4.63519 4.65537 4.69061 4.75210 4.83065 4.86812 4.90021 4.90737 5.00506 5.03406 5.11819 5.18648 5.20421 5.29907 5.42348 5.45461 5.53586 5.67575 5.85074 6.28762 6.34301 6.95785 7.14162 7.17673 7.79435 8.43180 9.26499 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.002740 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.234421 B =10217.091593 C =10354.411819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.584 5.584 3 C 0.597 3.403 4 O -0.566 6.566 5 C -0.272 4.272 6 C 0.020 3.980 7 O 0.099 5.901 8 N -0.366 5.366 9 C 0.068 3.932 10 C -0.022 4.022 11 C -0.114 4.114 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.111 4.111 15 C 0.140 3.860 16 H 0.103 0.897 17 C -0.140 4.140 18 C 0.154 3.846 19 N -0.618 5.618 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.058 4.058 23 N -0.943 5.943 24 Si 0.974 3.026 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.282 1.282 28 C 0.129 3.871 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.014 0.986 45 H 0.070 0.930 46 H 0.247 0.753 47 H 0.036 0.964 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 19.651 3.410 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.315 5.315 3 C 0.385 3.615 4 O -0.447 6.447 5 C -0.280 4.280 6 C -0.062 4.062 7 O 0.040 5.960 8 N -0.073 5.073 9 C -0.094 4.094 10 C -0.041 4.041 11 C -0.152 4.152 12 C -0.156 4.156 13 C -0.156 4.156 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.121 0.879 17 C -0.180 4.180 18 C 0.030 3.970 19 N -0.344 5.344 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.251 4.251 23 N -0.592 5.592 24 Si 0.803 3.197 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.208 1.208 28 C 0.003 3.997 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.278 0.722 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.032 0.968 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.165 20.725 3.702 21.678 hybrid contribution -0.424 -2.043 -0.074 2.088 sum 4.741 18.682 3.627 19.613 Atomic orbital electron populations 1.22257 0.78057 1.04376 1.02924 1.47647 1.07969 1.04616 1.71231 1.17092 0.86046 0.82376 0.75943 1.90750 1.14719 1.87405 1.51801 1.22176 0.99546 0.97142 1.09095 1.27165 0.95148 0.86081 0.97825 1.84568 1.38188 1.25822 1.47394 1.73583 1.00585 1.22174 1.10921 1.24906 0.97549 0.88060 0.98928 1.20403 0.89697 1.00605 0.93414 1.22460 0.99837 0.99885 0.93064 1.22504 0.98661 0.96735 0.97671 1.22349 1.02496 0.97119 0.93606 1.22156 0.99668 0.94326 0.98737 1.21934 0.96336 0.81939 0.96133 0.87879 1.23229 0.99633 0.98847 0.96275 1.21825 0.91893 0.97817 0.85480 1.44774 1.48017 1.35549 1.06096 1.19310 1.16842 1.06821 0.93530 0.90501 1.25479 1.01212 1.01938 0.96498 1.70008 1.40606 1.42494 1.06139 0.85222 0.78228 0.79252 0.77002 1.20557 1.22090 1.20832 1.21711 0.92535 0.91254 0.94218 0.90758 0.89696 0.90428 0.72185 0.89667 0.91818 0.91134 0.90478 0.90004 0.89888 0.91653 0.90732 0.92757 0.90912 0.90350 0.96769 0.91226 0.94316 0.94626 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 7.14 127.77 0.91 2.67 16 2 N -0.58 -17.63 2.84 -819.86 -2.33 -19.96 16 3 C 0.60 18.25 7.58 86.66 0.66 18.90 16 4 O -0.57 -20.67 15.83 -4.05 -0.06 -20.73 16 5 C -0.27 -6.91 5.64 -18.75 -0.11 -7.01 16 6 C 0.02 0.36 10.14 67.61 0.69 1.05 16 7 O 0.10 2.08 11.06 76.97 0.85 2.93 16 8 N -0.37 -8.97 11.85 -44.78 -0.53 -9.50 16 9 C 0.07 1.73 5.79 45.16 0.26 1.99 16 10 C -0.02 -0.51 3.42 -10.82 -0.04 -0.54 16 11 C -0.11 -2.25 6.36 31.70 0.20 -2.05 16 12 C -0.12 -1.79 6.91 31.91 0.22 -1.57 16 13 C -0.12 -1.86 6.83 31.67 0.22 -1.64 16 14 C -0.11 -2.24 6.45 31.32 0.20 -2.03 16 15 C 0.14 4.81 3.54 46.18 0.16 4.98 16 16 H 0.10 3.54 7.08 -2.38 -0.02 3.52 16 17 C -0.14 -5.03 6.68 31.99 0.21 -4.82 16 18 C 0.15 6.89 5.04 86.85 0.44 7.33 16 19 N -0.62 -29.30 2.85 -691.29 -1.97 -31.26 16 20 C -0.24 -12.45 10.28 84.03 0.86 -11.59 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.06 -3.11 5.49 84.86 0.47 -2.65 16 23 N -0.94 -52.69 10.09 21.65 0.22 -52.48 16 24 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.13 5.06 6.09 86.68 0.53 5.59 16 29 H 0.07 2.57 5.17 -2.39 -0.01 2.56 16 30 H 0.08 1.82 5.98 -2.38 -0.01 1.81 16 31 H 0.08 1.74 7.25 -2.39 -0.02 1.72 16 32 H 0.26 2.70 6.68 -2.91 -0.02 2.68 16 33 H 0.08 2.28 7.38 -2.39 -0.02 2.26 16 34 H 0.06 1.34 7.72 -2.39 -0.02 1.32 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.20 7.66 -2.39 -0.02 1.19 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 44 H 0.01 0.65 6.01 -2.38 -0.01 0.63 16 45 H 0.07 3.67 5.87 -2.39 -0.01 3.65 16 46 H 0.25 13.56 8.31 -92.70 -0.77 12.78 16 47 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.03 1.17 7.56 -2.38 -0.02 1.16 16 Total: -1.00 -64.95 372.52 5.07 -59.88 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.97 Total: 16.81 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.89 Total: 8.59 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -4.61 Total: -113.21 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.79 Total: -17.80 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.95 5.07 -59.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033140051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.978 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds