Wall clock time and date at job start Tue Mar 31 2020 17:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 120.00120 * 2 1 4 4 O 1.21609 * 119.99580 * 175.76734 * 3 2 1 5 5 C 1.47397 * 119.99948 * 355.77691 * 3 2 1 6 6 C 1.37357 * 128.56550 * 34.96409 * 5 3 2 7 7 O 1.33500 * 106.33915 * 179.85477 * 6 5 3 8 8 N 1.20652 * 113.15462 * 0.44703 * 7 6 5 9 9 C 1.30012 * 112.30287 * 359.71934 * 8 7 6 10 10 C 1.50704 * 127.33376 * 179.97438 * 9 8 7 11 11 C 1.54265 * 110.03265 * 57.95175 * 10 9 8 12 12 C 1.54971 * 104.15967 * 217.13908 * 11 10 9 13 13 C 1.54889 * 102.77613 * 37.88383 * 12 11 10 14 14 C 1.53877 * 110.03295 * 300.73003 * 10 9 8 15 15 C 1.46499 * 119.99589 * 180.02562 * 2 1 3 16 16 H 1.09000 * 110.77902 * 176.76146 * 15 2 1 17 17 C 1.55155 * 110.72412 * 300.00073 * 15 2 1 18 18 C 1.54898 * 101.61966 * 153.84666 * 17 15 2 19 19 N 1.47474 * 104.81485 * 323.04439 * 18 17 15 20 20 C 1.36932 * 125.62807 * 204.05115 * 19 18 17 21 21 H 1.08006 * 119.99810 * 174.17822 * 20 19 18 22 22 C 1.38806 * 120.00227 * 354.17433 * 20 19 18 23 23 N 1.31618 * 120.00102 * 4.77085 * 22 20 19 24 24 Si 1.86799 * 119.99793 * 184.76793 * 22 20 19 25 25 H 1.48507 * 109.47353 * 95.00317 * 24 22 20 26 26 H 1.48503 * 109.47238 * 215.00000 * 24 22 20 27 27 H 1.48497 * 109.47418 * 335.00319 * 24 22 20 28 28 C 1.47022 * 108.71990 * 24.06901 * 19 18 17 29 29 H 1.08994 * 109.47236 * 275.63271 * 1 2 3 30 30 H 1.09004 * 109.47084 * 35.63024 * 1 2 3 31 31 H 1.08998 * 109.47451 * 155.62774 * 1 2 3 32 32 H 1.08002 * 126.83069 * 359.97438 * 6 5 3 33 33 H 1.08999 * 110.01780 * 179.34135 * 10 9 8 34 34 H 1.08997 * 110.48430 * 335.77976 * 11 10 9 35 35 H 1.08998 * 110.48987 * 98.42680 * 11 10 9 36 36 H 1.09009 * 110.71461 * 279.57173 * 12 11 10 37 37 H 1.08991 * 110.76543 * 156.22455 * 12 11 10 38 38 H 1.09005 * 110.48327 * 203.40709 * 13 12 11 39 39 H 1.08995 * 110.48401 * 80.76991 * 13 12 11 40 40 H 1.08995 * 110.03793 * 238.57093 * 14 10 9 41 41 H 1.09004 * 110.03136 * 0.02562 * 14 10 9 42 42 H 1.09003 * 111.00036 * 271.94469 * 17 15 2 43 43 H 1.09000 * 111.00147 * 35.75362 * 17 15 2 44 44 H 1.09005 * 110.36983 * 81.84752 * 18 17 15 45 45 H 1.09003 * 110.36819 * 204.17289 * 18 17 15 46 46 H 0.97007 * 119.99788 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.88377 * 239.56509 * 28 19 18 48 48 H 1.08997 * 109.88246 * 118.39515 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3525 1.1685 0.0777 5 6 1.4049 2.4420 -0.0940 6 6 0.1781 2.7645 0.4328 7 8 -0.0595 4.0309 0.0833 8 7 0.8269 4.5152 -0.5766 9 6 1.8027 3.6806 -0.7804 10 6 3.0711 3.9292 -1.5555 11 6 3.8335 5.1265 -0.9514 12 6 4.4302 5.8557 -2.1818 13 6 3.3045 5.7238 -3.2374 14 6 2.7352 4.3084 -3.0085 15 6 2.1974 -1.2688 -0.0006 16 1 3.2719 -1.0950 -0.0581 17 6 1.8435 -2.1076 1.2558 18 6 2.1162 -3.5482 0.7561 19 7 1.6776 -3.5483 -0.6519 20 6 1.2888 -4.6500 -1.3662 21 1 0.8947 -4.5344 -2.3651 22 6 1.4013 -5.9152 -0.8065 23 7 1.7927 -6.0497 0.4429 24 14 0.9972 -7.4270 -1.8266 25 1 2.2440 -7.9683 -2.4249 26 1 0.3765 -8.4590 -0.9578 27 1 0.0500 -7.0556 -2.9082 28 6 1.7272 -2.1702 -1.1617 29 1 -0.3633 0.1009 1.0226 30 1 -0.3633 0.8353 -0.5987 31 1 -0.3634 -0.9360 -0.4241 32 1 -0.4654 2.1221 1.0156 33 1 3.6997 3.0389 -1.5378 34 1 3.1489 5.7829 -0.4142 35 1 4.6277 4.7790 -0.2907 36 1 5.3388 5.3584 -2.5216 37 1 4.6246 6.9035 -1.9532 38 1 3.7132 5.8124 -4.2440 39 1 2.5343 6.4766 -3.0698 40 1 3.2014 3.6027 -3.6960 41 1 1.6548 4.3131 -3.1529 42 1 2.4957 -1.8538 2.0914 43 1 0.7957 -1.9803 1.5280 44 1 3.1799 -3.7775 0.8217 45 1 1.5360 -4.2668 1.3349 46 1 1.8709 -6.9340 0.8341 47 1 0.7357 -1.8613 -1.4925 48 1 2.4331 -2.1065 -1.9898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033140052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:53 Heat of formation + Delta-G solvation = 53.054735 kcal Electronic energy + Delta-G solvation = -29259.663481 eV Core-core repulsion = 25318.654946 eV Total energy + Delta-G solvation = -3941.008535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.09356 -39.92388 -38.48509 -37.36050 -35.00648 -33.86554 -32.58336 -31.70221 -29.33019 -28.95013 -28.93583 -27.62221 -27.00244 -25.07480 -23.92140 -22.72470 -20.97880 -20.78532 -20.28469 -19.88241 -19.15522 -17.87960 -17.72900 -17.04251 -16.92566 -16.17526 -15.98477 -15.23674 -15.17044 -14.74595 -14.39797 -14.11649 -13.80636 -13.62245 -13.58479 -13.10470 -13.04010 -12.48247 -12.28416 -12.13707 -11.98024 -11.86292 -11.58745 -11.41190 -11.33949 -11.26870 -11.09140 -10.98132 -10.88596 -10.85745 -10.79231 -10.54820 -10.14724 -10.03591 -9.94157 -9.88611 -9.77258 -9.65797 -8.70115 -8.49996 -6.89948 -5.74040 -3.14570 0.97727 1.64203 2.62946 2.92430 3.16038 3.36605 3.42066 3.43734 3.78567 4.05086 4.39827 4.40460 4.44673 4.62555 4.69293 4.78871 5.03501 5.11717 5.19843 5.23600 5.27566 5.30274 5.36773 5.43384 5.43869 5.44855 5.50180 5.58913 5.61671 5.66853 5.68390 5.74005 5.81475 5.88985 5.95809 6.08130 6.15006 6.16851 6.25115 6.43758 6.49686 6.63028 6.87977 7.39949 7.46507 7.54789 7.76663 8.02183 8.12976 8.26138 9.14282 9.75023 10.39448 11.31877 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.002569 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.295801 B =10897.434374 C =11341.109565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.591 5.591 3 C 0.591 3.409 4 O -0.530 6.530 5 C -0.241 4.241 6 C -0.016 4.016 7 O 0.095 5.905 8 N -0.355 5.355 9 C 0.077 3.923 10 C -0.019 4.019 11 C -0.113 4.113 12 C -0.124 4.124 13 C -0.122 4.122 14 C -0.116 4.116 15 C 0.127 3.873 16 H 0.106 0.894 17 C -0.152 4.152 18 C 0.160 3.840 19 N -0.602 5.602 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.129 3.871 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.228 0.772 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.102 0.898 46 H 0.253 0.747 47 H 0.029 0.971 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 22.003 -0.928 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.322 5.322 3 C 0.378 3.622 4 O -0.407 6.407 5 C -0.248 4.248 6 C -0.098 4.098 7 O 0.035 5.965 8 N -0.061 5.061 9 C -0.086 4.086 10 C -0.039 4.039 11 C -0.151 4.151 12 C -0.161 4.161 13 C -0.160 4.160 14 C -0.154 4.154 15 C 0.025 3.975 16 H 0.124 0.876 17 C -0.192 4.192 18 C 0.035 3.965 19 N -0.329 5.329 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.002 3.998 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.873 23.006 -1.213 23.114 hybrid contribution -0.084 -1.752 -0.263 1.773 sum -1.957 21.254 -1.476 21.395 Atomic orbital electron populations 1.22085 0.79928 1.04564 1.01442 1.47696 1.07005 1.05655 1.71856 1.16899 0.86492 0.81840 0.76926 1.90791 1.13120 1.86833 1.49957 1.22377 0.97107 0.97328 1.08029 1.26652 0.96663 0.86745 0.99758 1.84578 1.37275 1.23624 1.51048 1.73589 0.99131 1.21701 1.11650 1.24712 0.97058 0.87922 0.98888 1.20395 0.89570 1.00935 0.92967 1.22435 0.99332 0.95513 0.97852 1.22512 0.98193 1.00318 0.95089 1.22350 0.97987 0.96618 0.99032 1.22215 1.01347 0.97286 0.94530 1.22308 0.97090 0.80768 0.97360 0.87637 1.23392 1.00797 0.99009 0.95960 1.21798 0.98257 0.90924 0.85556 1.44438 1.78038 1.01155 1.09229 1.19049 1.35094 0.83779 0.97538 0.90450 1.24810 1.01432 0.97476 0.96665 1.69846 1.53296 1.21752 1.11888 0.86068 0.77800 0.82689 0.79006 1.21566 1.21688 1.20616 1.21539 0.97912 0.86391 0.93986 0.92328 0.91332 0.88948 0.75635 0.87609 0.91238 0.90881 0.91123 0.91357 0.91469 0.91508 0.90947 0.91613 0.91933 0.91764 0.96366 0.88035 0.93618 0.95310 0.95536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 7.81 59.85 0.47 1.15 16 2 N -0.59 -8.59 2.89 -173.11 -0.50 -9.09 16 3 C 0.59 8.97 7.61 -12.53 -0.10 8.87 16 4 O -0.53 -9.73 15.57 5.27 0.08 -9.65 16 5 C -0.24 -3.00 5.74 -102.90 -0.59 -3.59 16 6 C -0.02 -0.15 10.10 30.41 0.31 0.16 16 7 O 0.10 0.99 11.06 18.64 0.21 1.20 16 8 N -0.35 -4.30 11.85 34.78 0.41 -3.89 16 9 C 0.08 0.96 5.79 -79.77 -0.46 0.50 16 10 C -0.02 -0.22 3.42 -90.65 -0.31 -0.53 16 11 C -0.11 -1.15 6.36 -25.03 -0.16 -1.31 16 12 C -0.12 -1.03 6.91 -24.69 -0.17 -1.20 16 13 C -0.12 -1.03 6.83 -25.07 -0.17 -1.21 16 14 C -0.12 -1.16 6.45 -25.61 -0.17 -1.32 16 15 C 0.13 2.26 3.35 -66.09 -0.22 2.04 16 16 H 0.11 2.04 7.02 -51.93 -0.36 1.67 16 17 C -0.15 -2.78 6.65 -24.59 -0.16 -2.94 16 18 C 0.16 3.75 5.75 -2.51 -0.01 3.74 16 19 N -0.60 -14.91 3.40 -170.03 -0.58 -15.48 16 20 C -0.23 -6.14 10.26 -15.06 -0.15 -6.29 16 21 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 22 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 23 N -0.92 -26.21 10.18 55.49 0.57 -25.64 16 24 Si 0.91 21.60 29.56 -169.99 -5.02 16.58 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.13 2.61 6.77 -3.06 -0.02 2.59 16 29 H 0.06 0.50 7.43 -51.93 -0.39 0.11 16 30 H 0.07 0.61 5.88 -51.93 -0.31 0.30 16 31 H 0.09 1.15 6.17 -51.93 -0.32 0.83 16 32 H 0.23 1.18 6.35 -52.49 -0.33 0.85 16 33 H 0.11 1.39 7.16 -51.93 -0.37 1.02 16 34 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.10 7.34 -51.93 -0.38 0.72 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 2.66 6.13 -51.93 -0.32 2.34 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 47 H 0.03 0.56 6.01 -51.93 -0.31 0.25 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -31.69 375.39 -8.44 -40.13 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.24 Total: -0.16 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.02 Total: 0.35 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.10 Total: -54.10 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.29 Total: -8.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.69 -8.44 -40.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033140052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.186 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds