Wall clock time and date at job start Tue Mar 31 2020 17:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 120.00120 * 2 1 4 4 O 1.21609 * 119.99580 * 175.76734 * 3 2 1 5 5 C 1.47397 * 119.99948 * 355.77691 * 3 2 1 6 6 C 1.37357 * 128.56550 * 34.96409 * 5 3 2 7 7 O 1.33500 * 106.33915 * 179.85477 * 6 5 3 8 8 N 1.20652 * 113.15462 * 0.44703 * 7 6 5 9 9 C 1.30012 * 112.30287 * 359.71934 * 8 7 6 10 10 C 1.50704 * 127.33376 * 179.97438 * 9 8 7 11 11 C 1.54265 * 110.03265 * 57.95175 * 10 9 8 12 12 C 1.54971 * 104.15967 * 217.13908 * 11 10 9 13 13 C 1.54889 * 102.77613 * 37.88383 * 12 11 10 14 14 C 1.53877 * 110.03295 * 300.73003 * 10 9 8 15 15 C 1.46499 * 119.99589 * 180.02562 * 2 1 3 16 16 H 1.09000 * 110.77902 * 176.76146 * 15 2 1 17 17 C 1.55155 * 110.72412 * 300.00073 * 15 2 1 18 18 C 1.54898 * 101.61966 * 153.84666 * 17 15 2 19 19 N 1.47474 * 104.81485 * 323.04439 * 18 17 15 20 20 C 1.36932 * 125.62807 * 204.05115 * 19 18 17 21 21 H 1.08006 * 119.99810 * 174.17822 * 20 19 18 22 22 C 1.38806 * 120.00227 * 354.17433 * 20 19 18 23 23 N 1.31618 * 120.00102 * 4.77085 * 22 20 19 24 24 Si 1.86799 * 119.99793 * 184.76793 * 22 20 19 25 25 H 1.48507 * 109.47353 * 95.00317 * 24 22 20 26 26 H 1.48503 * 109.47238 * 215.00000 * 24 22 20 27 27 H 1.48497 * 109.47418 * 335.00319 * 24 22 20 28 28 C 1.47022 * 108.71990 * 24.06901 * 19 18 17 29 29 H 1.08994 * 109.47236 * 275.63271 * 1 2 3 30 30 H 1.09004 * 109.47084 * 35.63024 * 1 2 3 31 31 H 1.08998 * 109.47451 * 155.62774 * 1 2 3 32 32 H 1.08002 * 126.83069 * 359.97438 * 6 5 3 33 33 H 1.08999 * 110.01780 * 179.34135 * 10 9 8 34 34 H 1.08997 * 110.48430 * 335.77976 * 11 10 9 35 35 H 1.08998 * 110.48987 * 98.42680 * 11 10 9 36 36 H 1.09009 * 110.71461 * 279.57173 * 12 11 10 37 37 H 1.08991 * 110.76543 * 156.22455 * 12 11 10 38 38 H 1.09005 * 110.48327 * 203.40709 * 13 12 11 39 39 H 1.08995 * 110.48401 * 80.76991 * 13 12 11 40 40 H 1.08995 * 110.03793 * 238.57093 * 14 10 9 41 41 H 1.09004 * 110.03136 * 0.02562 * 14 10 9 42 42 H 1.09003 * 111.00036 * 271.94469 * 17 15 2 43 43 H 1.09000 * 111.00147 * 35.75362 * 17 15 2 44 44 H 1.09005 * 110.36983 * 81.84752 * 18 17 15 45 45 H 1.09003 * 110.36819 * 204.17289 * 18 17 15 46 46 H 0.97007 * 119.99788 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.88377 * 239.56509 * 28 19 18 48 48 H 1.08997 * 109.88246 * 118.39515 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3525 1.1685 0.0777 5 6 1.4049 2.4420 -0.0940 6 6 0.1781 2.7645 0.4328 7 8 -0.0595 4.0309 0.0833 8 7 0.8269 4.5152 -0.5766 9 6 1.8027 3.6806 -0.7804 10 6 3.0711 3.9292 -1.5555 11 6 3.8335 5.1265 -0.9514 12 6 4.4302 5.8557 -2.1818 13 6 3.3045 5.7238 -3.2374 14 6 2.7352 4.3084 -3.0085 15 6 2.1974 -1.2688 -0.0006 16 1 3.2719 -1.0950 -0.0581 17 6 1.8435 -2.1076 1.2558 18 6 2.1162 -3.5482 0.7561 19 7 1.6776 -3.5483 -0.6519 20 6 1.2888 -4.6500 -1.3662 21 1 0.8947 -4.5344 -2.3651 22 6 1.4013 -5.9152 -0.8065 23 7 1.7927 -6.0497 0.4429 24 14 0.9972 -7.4270 -1.8266 25 1 2.2440 -7.9683 -2.4249 26 1 0.3765 -8.4590 -0.9578 27 1 0.0500 -7.0556 -2.9082 28 6 1.7272 -2.1702 -1.1617 29 1 -0.3633 0.1009 1.0226 30 1 -0.3633 0.8353 -0.5987 31 1 -0.3634 -0.9360 -0.4241 32 1 -0.4654 2.1221 1.0156 33 1 3.6997 3.0389 -1.5378 34 1 3.1489 5.7829 -0.4142 35 1 4.6277 4.7790 -0.2907 36 1 5.3388 5.3584 -2.5216 37 1 4.6246 6.9035 -1.9532 38 1 3.7132 5.8124 -4.2440 39 1 2.5343 6.4766 -3.0698 40 1 3.2014 3.6027 -3.6960 41 1 1.6548 4.3131 -3.1529 42 1 2.4957 -1.8538 2.0914 43 1 0.7957 -1.9803 1.5280 44 1 3.1799 -3.7775 0.8217 45 1 1.5360 -4.2668 1.3349 46 1 1.8709 -6.9340 0.8341 47 1 0.7357 -1.8613 -1.4925 48 1 2.4331 -2.1065 -1.9898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033140052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:52 Heat of formation + Delta-G solvation = 34.917329 kcal Electronic energy + Delta-G solvation = -29260.449978 eV Core-core repulsion = 25318.654946 eV Total energy + Delta-G solvation = -3941.795032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.98441 -41.17560 -39.32876 -38.88356 -36.39266 -34.84141 -34.12704 -32.92328 -31.08797 -29.80794 -29.70175 -29.14824 -28.08047 -26.71391 -25.28500 -23.55050 -22.16365 -22.12127 -21.58888 -20.73643 -20.41476 -18.97910 -18.80911 -18.66698 -18.03448 -17.38100 -16.76800 -16.74715 -16.31911 -16.11269 -15.88040 -15.47961 -14.91542 -14.66946 -14.45640 -14.34801 -14.29008 -13.92980 -13.77463 -13.36780 -13.16217 -12.98184 -12.94180 -12.74485 -12.73319 -12.45672 -12.22814 -12.17860 -12.08131 -11.99999 -11.99577 -11.83447 -11.67441 -11.54868 -11.42427 -11.21324 -10.86320 -10.75287 -10.69215 -9.73905 -8.90886 -7.81248 -5.24426 0.13112 0.71696 1.47182 1.49698 1.55444 1.58941 1.90614 2.22828 2.49895 2.89490 3.20080 3.32119 3.50134 3.64150 3.68983 3.76426 3.85910 3.90329 3.93421 3.98249 4.16315 4.22759 4.38239 4.42698 4.50340 4.51502 4.57086 4.58498 4.63023 4.66090 4.74302 4.79293 4.82798 4.90132 4.94451 4.98913 4.99282 5.06624 5.17358 5.19134 5.29851 5.41347 5.46489 5.49944 5.57144 5.75544 6.25533 6.27228 6.96288 7.08041 7.19998 7.74081 8.38041 9.22895 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.002569 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.295801 B =10897.434374 C =11341.109565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.588 5.588 3 C 0.594 3.406 4 O -0.572 6.572 5 C -0.273 4.273 6 C 0.024 3.976 7 O 0.102 5.898 8 N -0.366 5.366 9 C 0.065 3.935 10 C -0.024 4.024 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.114 4.114 15 C 0.144 3.856 16 H 0.085 0.915 17 C -0.131 4.131 18 C 0.163 3.837 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.082 0.918 22 C -0.062 4.062 23 N -0.947 5.947 24 Si 0.979 3.021 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.266 1.266 28 C 0.129 3.871 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.272 0.728 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.084 0.916 44 H -0.014 1.014 45 H 0.073 0.927 46 H 0.248 0.752 47 H 0.048 0.952 48 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 23.743 -1.125 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.319 5.319 3 C 0.383 3.617 4 O -0.452 6.452 5 C -0.280 4.280 6 C -0.057 4.057 7 O 0.043 5.957 8 N -0.072 5.072 9 C -0.097 4.097 10 C -0.043 4.043 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.152 4.152 15 C 0.039 3.961 16 H 0.104 0.896 17 C -0.170 4.170 18 C 0.038 3.962 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.100 0.900 22 C -0.255 4.255 23 N -0.596 5.596 24 Si 0.807 3.193 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.191 1.191 28 C 0.003 3.997 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.287 0.713 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.004 0.996 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.921 24.792 -1.428 25.141 hybrid contribution 0.515 -2.267 -0.199 2.333 sum -3.406 22.525 -1.627 22.839 Atomic orbital electron populations 1.22402 0.77260 1.04923 1.04117 1.47633 1.08470 1.04154 1.71635 1.17175 0.86071 0.82604 0.75836 1.90770 1.15144 1.87462 1.51826 1.22109 0.98818 0.96295 1.10828 1.27334 0.95252 0.85999 0.97157 1.84573 1.36636 1.24085 1.50446 1.73598 0.99322 1.21926 1.12331 1.24868 0.97421 0.88209 0.99186 1.20397 0.89398 1.00450 0.94096 1.22412 0.98947 0.95083 0.98522 1.22517 0.98162 1.00941 0.94039 1.22341 0.97948 0.95386 0.99856 1.22204 1.00958 0.98445 0.93573 1.21814 0.96439 0.81945 0.95857 0.89642 1.23173 1.02326 0.95218 0.96312 1.21561 0.95703 0.93692 0.85244 1.44687 1.77816 1.02384 1.09881 1.19409 1.34700 0.84861 0.97908 0.90040 1.25624 1.01975 1.00203 0.97745 1.70072 1.54481 1.21826 1.13243 0.85057 0.77466 0.79023 0.77752 1.21890 1.21856 1.19102 1.21625 0.98564 0.84942 0.94554 0.88821 0.88841 0.90321 0.71298 0.89951 0.91726 0.91511 0.90731 0.89918 0.90011 0.91432 0.90900 0.92296 0.90541 0.89701 0.99593 0.90864 0.94195 0.93412 0.96779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.97 7.81 127.77 1.00 1.97 16 2 N -0.59 -15.99 2.89 -819.85 -2.37 -18.36 16 3 C 0.59 17.39 7.61 86.65 0.66 18.05 16 4 O -0.57 -21.37 15.57 -4.06 -0.06 -21.43 16 5 C -0.27 -6.26 5.74 -18.75 -0.11 -6.36 16 6 C 0.02 0.35 10.10 67.61 0.68 1.03 16 7 O 0.10 1.80 11.06 76.93 0.85 2.66 16 8 N -0.37 -8.18 11.85 -44.79 -0.53 -8.71 16 9 C 0.07 1.57 5.79 45.16 0.26 1.83 16 10 C -0.02 -0.56 3.42 -10.81 -0.04 -0.59 16 11 C -0.11 -2.24 6.36 31.70 0.20 -2.04 16 12 C -0.12 -1.84 6.91 31.91 0.22 -1.62 16 13 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 14 C -0.11 -2.22 6.45 31.32 0.20 -2.02 16 15 C 0.14 5.05 3.35 46.18 0.15 5.20 16 16 H 0.09 3.38 7.02 -2.39 -0.02 3.36 16 17 C -0.13 -4.67 6.65 31.98 0.21 -4.46 16 18 C 0.16 7.87 5.75 86.84 0.50 8.37 16 19 N -0.62 -31.19 3.40 -691.87 -2.35 -33.53 16 20 C -0.24 -13.13 10.26 84.03 0.86 -12.26 16 21 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16 23 N -0.95 -55.37 10.18 21.65 0.22 -55.14 16 24 Si 0.98 44.73 29.56 68.60 2.03 46.76 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 28 C 0.13 5.24 6.77 86.73 0.59 5.83 16 29 H 0.09 1.07 7.43 -2.39 -0.02 1.06 16 30 H 0.09 1.23 5.88 -2.38 -0.01 1.21 16 31 H 0.08 1.70 6.17 -2.39 -0.01 1.69 16 32 H 0.27 1.16 6.35 -2.91 -0.02 1.14 16 33 H 0.08 2.28 7.16 -2.39 -0.02 2.26 16 34 H 0.06 1.35 7.72 -2.39 -0.02 1.33 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.22 7.67 -2.39 -0.02 1.20 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.08 2.69 7.34 -2.39 -0.02 2.67 16 44 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 45 H 0.07 3.96 6.13 -2.39 -0.01 3.94 16 46 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 47 H 0.05 1.78 6.01 -2.39 -0.01 1.76 16 48 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -71.88 375.39 4.84 -67.04 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.97 Total: 12.42 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.08 Total: 8.32 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -5.03 Total: -115.75 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.79 Total: -18.78 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.88 4.84 -67.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033140052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.959 kcal (2) G-P(sol) polarization free energy of solvation -71.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds