Wall clock time and date at job start Tue Mar 31 2020 17:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99983 * 2 1 4 4 O 1.21493 * 119.99774 * 185.33382 * 3 2 1 5 5 C 1.48326 * 120.00097 * 5.33470 * 3 2 1 6 6 N 1.31337 * 127.13499 * 5.25865 * 5 3 2 7 7 O 1.21243 * 111.48769 * 179.75082 * 6 5 3 8 8 C 1.33654 * 111.63280 * 0.21826 * 7 6 5 9 9 C 1.34952 * 106.60462 * 0.18328 * 8 7 6 10 10 C 1.50088 * 126.61885 * 178.90464 * 9 8 7 11 11 C 1.53339 * 108.92302 * 28.01955 * 10 9 8 12 12 C 1.52664 * 109.56859 * 271.48711 * 11 10 9 13 13 C 1.52628 * 110.91030 * 61.44014 * 12 11 10 14 14 C 1.50610 * 127.96048 * 180.88451 * 8 7 6 15 15 C 1.46502 * 119.99806 * 179.97438 * 2 1 3 16 16 H 1.08994 * 110.63995 * 181.68818 * 15 2 1 17 17 C 1.55157 * 110.72042 * 305.02334 * 15 2 1 18 18 C 1.55138 * 101.48455 * 82.69818 * 17 15 2 19 19 N 1.47428 * 104.72184 * 37.29375 * 18 17 15 20 20 C 1.36936 * 125.64517 * 155.82007 * 19 18 17 21 21 H 1.07997 * 119.99624 * 192.96626 * 20 19 18 22 22 C 1.38810 * 120.00053 * 12.97096 * 20 19 18 23 23 N 1.31615 * 120.00257 * 27.07610 * 22 20 19 24 24 Si 1.86798 * 120.00017 * 207.07396 * 22 20 19 25 25 H 1.48498 * 109.47467 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.47326 * 300.00625 * 24 22 20 27 27 H 1.48506 * 109.46846 * 59.99756 * 24 22 20 28 28 C 1.47027 * 108.70236 * 335.55386 * 19 18 17 29 29 H 1.09001 * 109.47387 * 274.18469 * 1 2 3 30 30 H 1.09002 * 109.47534 * 34.18620 * 1 2 3 31 31 H 1.09002 * 109.47705 * 154.18434 * 1 2 3 32 32 H 1.09003 * 109.56100 * 147.84532 * 10 9 8 33 33 H 1.08991 * 109.56500 * 268.18764 * 10 9 8 34 34 H 1.08998 * 109.45250 * 151.45738 * 11 10 9 35 35 H 1.09002 * 109.45513 * 31.51677 * 11 10 9 36 36 H 1.08990 * 109.18910 * 301.06459 * 12 11 10 37 37 H 1.09006 * 109.18265 * 181.80332 * 12 11 10 38 38 H 1.08998 * 109.39320 * 273.50750 * 13 12 11 39 39 H 1.09001 * 109.31861 * 153.73635 * 13 12 11 40 40 H 1.08996 * 109.54606 * 346.12194 * 14 8 7 41 41 H 1.09006 * 109.53778 * 106.29065 * 14 8 7 42 42 H 1.09001 * 111.00427 * 200.93318 * 17 15 2 43 43 H 1.08999 * 111.00291 * 324.75219 * 17 15 2 44 44 H 1.08998 * 110.49404 * 278.45461 * 18 17 15 45 45 H 1.09001 * 110.34096 * 156.05952 * 18 17 15 46 46 H 0.97000 * 119.99737 * 6.20582 * 23 22 20 47 47 H 1.08994 * 109.87771 * 120.70567 * 28 19 18 48 48 H 1.08996 * 109.87881 * 241.87109 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3498 1.1695 -0.0978 5 6 1.4021 2.4490 0.1194 6 7 0.1149 2.6073 0.3273 7 8 -0.1852 3.7807 0.3812 8 6 0.8794 4.5701 0.2088 9 6 1.9390 3.7543 0.0270 10 6 3.3573 4.1726 -0.2300 11 6 3.5937 5.5470 0.4076 12 6 3.2277 6.6432 -0.5900 13 6 1.7523 6.5613 -0.9723 14 6 0.9291 6.0753 0.2249 15 6 2.1974 -1.2688 0.0006 16 1 3.2725 -1.0918 0.0305 17 6 1.7506 -2.1601 1.1894 18 6 0.4678 -2.8184 0.6168 19 7 0.7744 -3.0625 -0.8044 20 6 0.1809 -4.0077 -1.5979 21 1 0.6105 -4.2539 -2.5577 22 6 -0.9728 -4.6492 -1.1686 23 7 -1.7872 -4.0465 -0.3285 24 14 -1.3695 -6.3680 -1.7833 25 1 -2.6462 -6.8272 -1.1798 26 1 -1.4998 -6.3470 -3.2625 27 1 -0.2772 -7.2966 -1.3959 28 6 1.8182 -2.1187 -1.2304 29 1 -0.3634 0.0750 1.0249 30 1 -0.3634 0.8501 -0.5774 31 1 -0.3634 -0.9251 -0.4475 32 1 4.0381 3.4441 0.2104 33 1 3.5307 4.2340 -1.3043 34 1 4.6437 5.6433 0.6838 35 1 2.9736 5.6453 1.2987 36 1 3.8371 6.5297 -1.4864 37 1 3.4282 7.6165 -0.1421 38 1 1.6315 5.8643 -1.8016 39 1 1.4030 7.5484 -1.2752 40 1 -0.0830 6.4742 0.1575 41 1 1.3939 6.4148 1.1506 42 1 2.5075 -2.9091 1.4223 43 1 1.5198 -1.5550 2.0662 44 1 -0.3824 -2.1428 0.7109 45 1 0.2643 -3.7593 1.1281 46 1 -1.6299 -3.1224 -0.0793 47 1 2.6908 -2.6668 -1.5856 48 1 1.4349 -1.4746 -2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033466834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:34 Heat of formation + Delta-G solvation = 61.722355 kcal Electronic energy + Delta-G solvation = -29853.104926 eV Core-core repulsion = 25912.472247 eV Total energy + Delta-G solvation = -3940.632679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.19819 -39.98593 -38.51172 -37.65818 -34.74901 -34.13714 -32.36199 -32.15406 -31.30501 -29.20251 -28.23081 -26.75377 -26.16612 -25.16083 -24.70697 -23.81944 -21.32696 -20.61276 -20.18690 -20.07589 -18.88467 -17.94002 -17.66992 -17.26919 -16.95221 -16.05537 -15.65186 -15.19470 -15.17688 -14.49824 -14.27378 -13.95527 -13.74174 -13.70209 -13.61564 -13.23697 -13.04337 -12.77816 -12.56916 -12.45548 -12.23407 -12.01179 -11.86628 -11.60061 -11.53306 -11.26639 -11.10260 -10.95310 -10.78351 -10.75027 -10.59684 -10.46308 -10.28443 -10.27405 -10.01454 -9.80675 -9.54135 -9.25787 -8.47126 -8.40784 -6.98693 -6.11178 -3.14316 1.06232 1.54963 2.73735 2.97894 3.18117 3.49965 3.54260 3.71799 3.88879 4.22807 4.37297 4.45741 4.57827 4.58204 4.64751 4.73197 4.94741 4.99403 5.08943 5.20316 5.23101 5.31596 5.35451 5.37497 5.43991 5.54028 5.55482 5.58624 5.60134 5.68133 5.70308 5.82326 5.85331 5.89034 5.94968 6.03629 6.07063 6.14103 6.24831 6.33649 6.43299 6.57363 6.84192 6.96286 6.99560 7.47136 7.74556 7.89959 8.16745 8.45895 8.99044 9.79379 10.32547 11.22059 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.002717 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.105123 B =10303.446027 C =10791.431909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.578 5.578 3 C 0.594 3.406 4 O -0.532 6.532 5 C -0.016 4.016 6 N -0.324 5.324 7 O 0.120 5.880 8 C -0.040 4.040 9 C -0.147 4.147 10 C -0.048 4.048 11 C -0.125 4.125 12 C -0.123 4.123 13 C -0.117 4.117 14 C -0.037 4.037 15 C 0.126 3.874 16 H 0.106 0.894 17 C -0.146 4.146 18 C 0.135 3.865 19 N -0.603 5.603 20 C -0.335 4.335 21 H 0.067 0.933 22 C -0.025 4.025 23 N -0.920 5.920 24 Si 1.064 2.936 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.128 3.872 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.268 0.732 47 H 0.038 0.962 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 23.480 2.741 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.309 5.309 3 C 0.380 3.620 4 O -0.408 6.408 5 C -0.174 4.174 6 N -0.026 5.026 7 O 0.046 5.954 8 C -0.104 4.104 9 C -0.151 4.151 10 C -0.085 4.085 11 C -0.162 4.162 12 C -0.160 4.160 13 C -0.155 4.155 14 C -0.075 4.075 15 C 0.023 3.977 16 H 0.124 0.876 17 C -0.185 4.185 18 C 0.010 3.990 19 N -0.331 5.331 20 C -0.463 4.463 21 H 0.085 0.915 22 C -0.226 4.226 23 N -0.561 5.561 24 Si 0.894 3.106 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.222 1.222 28 C 0.002 3.998 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.459 21.187 2.912 22.341 hybrid contribution 1.506 1.481 -0.353 2.141 sum 7.965 22.668 2.559 24.163 Atomic orbital electron populations 1.22305 0.78036 1.04793 1.02233 1.47718 1.08000 1.05027 1.70135 1.16949 0.86156 0.81519 0.77424 1.90727 1.12717 1.86370 1.51026 1.23178 0.90526 0.96344 1.07377 1.74700 1.15443 0.96185 1.16290 1.84802 1.33958 1.11555 1.65063 1.24075 0.85664 0.96239 1.04413 1.20634 0.98449 0.89982 1.06073 1.20015 0.89722 0.97072 1.01689 1.21747 1.02017 0.93683 0.98758 1.21560 0.95864 0.98880 0.99714 1.21588 0.94946 1.01867 0.97111 1.20248 1.02559 0.83759 1.00916 1.22229 0.96646 0.81704 0.97130 0.87645 1.23217 1.00359 0.98483 0.96427 1.21848 0.93085 0.98454 0.85620 1.44603 1.43915 1.38531 1.06028 1.19759 1.08341 1.15374 1.02792 0.91547 1.25706 0.91636 1.05367 0.99918 1.70811 1.34689 1.13732 1.36909 0.83530 0.75916 0.75909 0.75245 1.21080 1.22084 1.22154 1.21637 0.93195 0.91118 0.93860 0.92472 0.90950 0.87906 0.88876 0.90104 0.91050 0.91260 0.91454 0.91680 0.91233 0.90445 0.89285 0.88257 0.90249 0.91523 0.94690 0.92722 0.92061 0.94394 0.95357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 7.58 59.85 0.45 1.71 16 2 N -0.58 -10.55 2.82 -172.77 -0.49 -11.04 16 3 C 0.59 10.56 7.69 -12.11 -0.09 10.47 16 4 O -0.53 -10.09 14.86 5.37 0.08 -10.01 16 5 C -0.02 -0.25 6.80 -82.71 -0.56 -0.81 16 6 N -0.32 -4.91 8.97 33.31 0.30 -4.62 16 7 O 0.12 1.53 11.19 18.09 0.20 1.73 16 8 C -0.04 -0.42 6.63 -35.52 -0.24 -0.66 16 9 C -0.15 -1.83 5.72 -104.87 -0.60 -2.43 16 10 C -0.05 -0.50 5.42 -28.00 -0.15 -0.65 16 11 C -0.12 -0.89 5.55 -26.73 -0.15 -1.04 16 12 C -0.12 -0.67 5.64 -27.09 -0.15 -0.83 16 13 C -0.12 -0.66 5.63 -26.81 -0.15 -0.81 16 14 C -0.04 -0.23 5.55 -27.82 -0.15 -0.38 16 15 C 0.13 2.38 3.58 -66.10 -0.24 2.14 16 16 H 0.11 1.92 7.01 -51.93 -0.36 1.56 16 17 C -0.15 -2.72 6.54 -24.46 -0.16 -2.88 16 18 C 0.14 3.11 4.33 -2.40 -0.01 3.10 16 19 N -0.60 -15.20 2.91 -169.93 -0.49 -15.70 16 20 C -0.34 -9.45 10.05 -15.06 -0.15 -9.60 16 21 H 0.07 1.88 7.96 -52.49 -0.42 1.46 16 22 C -0.03 -0.72 5.10 -17.43 -0.09 -0.80 16 23 N -0.92 -27.46 12.80 55.49 0.71 -26.75 16 24 Si 1.06 25.44 30.00 -169.99 -5.10 20.35 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.13 2.79 6.28 -3.06 -0.02 2.77 16 29 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.07 1.27 5.86 -51.93 -0.30 0.97 16 31 H 0.10 2.19 4.87 -51.93 -0.25 1.94 16 32 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 33 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.49 5.69 -51.93 -0.30 0.20 16 36 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.50 6.38 -51.93 -0.33 0.17 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.83 4.22 -51.93 -0.22 0.62 16 45 H 0.05 1.39 7.70 -51.93 -0.40 0.99 16 46 H 0.27 7.89 5.82 -40.82 -0.24 7.65 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -32.29 362.31 -8.80 -41.09 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.01 Total: 0.21 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.46 Total: -0.72 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.03 Total: -58.10 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.28 Total: -8.28 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.29 -8.80 -41.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033466834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.810 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds