Wall clock time and date at job start Tue Mar 31 2020 17:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 119.99983 * 2 1 4 4 O 1.21493 * 119.99774 * 185.33382 * 3 2 1 5 5 C 1.48326 * 120.00097 * 5.33470 * 3 2 1 6 6 N 1.31337 * 127.13499 * 5.25865 * 5 3 2 7 7 O 1.21243 * 111.48769 * 179.75082 * 6 5 3 8 8 C 1.33654 * 111.63280 * 0.21826 * 7 6 5 9 9 C 1.34952 * 106.60462 * 0.18328 * 8 7 6 10 10 C 1.50088 * 126.61885 * 178.90464 * 9 8 7 11 11 C 1.53339 * 108.92302 * 28.01955 * 10 9 8 12 12 C 1.52664 * 109.56859 * 271.48711 * 11 10 9 13 13 C 1.52628 * 110.91030 * 61.44014 * 12 11 10 14 14 C 1.50610 * 127.96048 * 180.88451 * 8 7 6 15 15 C 1.46502 * 119.99806 * 179.97438 * 2 1 3 16 16 H 1.08994 * 110.63995 * 181.68818 * 15 2 1 17 17 C 1.55157 * 110.72042 * 305.02334 * 15 2 1 18 18 C 1.55138 * 101.48455 * 82.69818 * 17 15 2 19 19 N 1.47428 * 104.72184 * 37.29375 * 18 17 15 20 20 C 1.36936 * 125.64517 * 155.82007 * 19 18 17 21 21 H 1.07997 * 119.99624 * 192.96626 * 20 19 18 22 22 C 1.38810 * 120.00053 * 12.97096 * 20 19 18 23 23 N 1.31615 * 120.00257 * 27.07610 * 22 20 19 24 24 Si 1.86798 * 120.00017 * 207.07396 * 22 20 19 25 25 H 1.48498 * 109.47467 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.47326 * 300.00625 * 24 22 20 27 27 H 1.48506 * 109.46846 * 59.99756 * 24 22 20 28 28 C 1.47027 * 108.70236 * 335.55386 * 19 18 17 29 29 H 1.09001 * 109.47387 * 274.18469 * 1 2 3 30 30 H 1.09002 * 109.47534 * 34.18620 * 1 2 3 31 31 H 1.09002 * 109.47705 * 154.18434 * 1 2 3 32 32 H 1.09003 * 109.56100 * 147.84532 * 10 9 8 33 33 H 1.08991 * 109.56500 * 268.18764 * 10 9 8 34 34 H 1.08998 * 109.45250 * 151.45738 * 11 10 9 35 35 H 1.09002 * 109.45513 * 31.51677 * 11 10 9 36 36 H 1.08990 * 109.18910 * 301.06459 * 12 11 10 37 37 H 1.09006 * 109.18265 * 181.80332 * 12 11 10 38 38 H 1.08998 * 109.39320 * 273.50750 * 13 12 11 39 39 H 1.09001 * 109.31861 * 153.73635 * 13 12 11 40 40 H 1.08996 * 109.54606 * 346.12194 * 14 8 7 41 41 H 1.09006 * 109.53778 * 106.29065 * 14 8 7 42 42 H 1.09001 * 111.00427 * 200.93318 * 17 15 2 43 43 H 1.08999 * 111.00291 * 324.75219 * 17 15 2 44 44 H 1.08998 * 110.49404 * 278.45461 * 18 17 15 45 45 H 1.09001 * 110.34096 * 156.05952 * 18 17 15 46 46 H 0.97000 * 119.99737 * 6.20582 * 23 22 20 47 47 H 1.08994 * 109.87771 * 120.70567 * 28 19 18 48 48 H 1.08996 * 109.87881 * 241.87109 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3498 1.1695 -0.0978 5 6 1.4021 2.4490 0.1194 6 7 0.1149 2.6073 0.3273 7 8 -0.1852 3.7807 0.3812 8 6 0.8794 4.5701 0.2088 9 6 1.9390 3.7543 0.0270 10 6 3.3573 4.1726 -0.2300 11 6 3.5937 5.5470 0.4076 12 6 3.2277 6.6432 -0.5900 13 6 1.7523 6.5613 -0.9723 14 6 0.9291 6.0753 0.2249 15 6 2.1974 -1.2688 0.0006 16 1 3.2725 -1.0918 0.0305 17 6 1.7506 -2.1601 1.1894 18 6 0.4678 -2.8184 0.6168 19 7 0.7744 -3.0625 -0.8044 20 6 0.1809 -4.0077 -1.5979 21 1 0.6105 -4.2539 -2.5577 22 6 -0.9728 -4.6492 -1.1686 23 7 -1.7872 -4.0465 -0.3285 24 14 -1.3695 -6.3680 -1.7833 25 1 -2.6462 -6.8272 -1.1798 26 1 -1.4998 -6.3470 -3.2625 27 1 -0.2772 -7.2966 -1.3959 28 6 1.8182 -2.1187 -1.2304 29 1 -0.3634 0.0750 1.0249 30 1 -0.3634 0.8501 -0.5774 31 1 -0.3634 -0.9251 -0.4475 32 1 4.0381 3.4441 0.2104 33 1 3.5307 4.2340 -1.3043 34 1 4.6437 5.6433 0.6838 35 1 2.9736 5.6453 1.2987 36 1 3.8371 6.5297 -1.4864 37 1 3.4282 7.6165 -0.1421 38 1 1.6315 5.8643 -1.8016 39 1 1.4030 7.5484 -1.2752 40 1 -0.0830 6.4742 0.1575 41 1 1.3939 6.4148 1.1506 42 1 2.5075 -2.9091 1.4223 43 1 1.5198 -1.5550 2.0662 44 1 -0.3824 -2.1428 0.7109 45 1 0.2643 -3.7593 1.1281 46 1 -1.6299 -3.1224 -0.0793 47 1 2.6908 -2.6668 -1.5856 48 1 1.4349 -1.4746 -2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033466834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:33 Heat of formation + Delta-G solvation = 43.629993 kcal Electronic energy + Delta-G solvation = -29853.889470 eV Core-core repulsion = 25912.472247 eV Total energy + Delta-G solvation = -3941.417223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.25906 -41.49395 -39.46204 -39.00360 -36.37529 -35.28222 -34.10785 -32.93030 -32.20615 -31.06349 -29.94096 -28.03688 -27.24372 -26.41663 -25.80989 -25.35138 -22.43444 -22.17932 -21.79426 -20.62942 -20.26334 -19.68800 -19.00623 -18.36519 -18.26775 -17.43766 -16.67982 -16.51617 -16.26271 -15.83830 -15.70865 -15.65660 -15.12137 -14.80653 -14.56725 -14.38982 -14.32684 -14.19134 -13.78855 -13.69793 -13.56944 -13.38204 -12.88966 -12.84861 -12.71623 -12.64428 -12.56081 -12.20167 -12.08208 -12.03116 -11.88535 -11.80147 -11.60324 -11.58514 -11.40975 -11.33991 -11.14355 -10.55816 -10.14646 -9.94818 -9.07964 -8.35173 -5.34987 -0.06295 0.57624 1.50957 1.56595 1.64316 1.83318 1.85416 1.95987 2.61275 2.69268 3.16672 3.28306 3.43031 3.58372 3.61248 3.73549 3.86615 3.93009 3.95996 4.03044 4.08509 4.13130 4.24120 4.34047 4.35611 4.40071 4.40806 4.42968 4.68567 4.70358 4.72887 4.78698 4.80796 4.85834 4.87872 4.93098 5.01896 5.06780 5.15340 5.17090 5.27637 5.32422 5.33995 5.42545 5.52316 5.60250 6.01327 6.28546 6.64765 6.84905 6.97528 7.65910 8.22043 8.98471 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.002717 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.105123 B =10303.446027 C =10791.431909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.583 5.583 3 C 0.594 3.406 4 O -0.547 6.547 5 C -0.045 4.045 6 N -0.346 5.346 7 O 0.127 5.873 8 C -0.019 4.019 9 C -0.160 4.160 10 C -0.046 4.046 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.116 4.116 14 C -0.037 4.037 15 C 0.137 3.863 16 H 0.119 0.881 17 C -0.128 4.128 18 C 0.141 3.859 19 N -0.619 5.619 20 C -0.348 4.348 21 H 0.060 0.940 22 C -0.074 4.074 23 N -0.945 5.945 24 Si 1.116 2.884 25 H -0.290 1.290 26 H -0.277 1.277 27 H -0.281 1.281 28 C 0.129 3.871 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.258 0.742 47 H 0.044 0.956 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 25.990 3.101 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.314 5.314 3 C 0.381 3.619 4 O -0.424 6.424 5 C -0.201 4.201 6 N -0.047 5.047 7 O 0.052 5.948 8 C -0.083 4.083 9 C -0.165 4.165 10 C -0.083 4.083 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.153 4.153 14 C -0.074 4.074 15 C 0.034 3.966 16 H 0.136 0.864 17 C -0.167 4.167 18 C 0.016 3.984 19 N -0.347 5.347 20 C -0.476 4.476 21 H 0.078 0.922 22 C -0.270 4.270 23 N -0.589 5.589 24 Si 0.941 3.059 25 H -0.216 1.216 26 H -0.203 1.203 27 H -0.208 1.208 28 C 0.003 3.997 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 7.225 23.706 3.265 24.997 hybrid contribution 1.289 0.832 -0.502 1.615 sum 8.514 24.538 2.763 26.120 Atomic orbital electron populations 1.22043 0.78148 1.03101 1.02273 1.47729 1.07840 1.05177 1.70702 1.17213 0.86127 0.81974 0.76550 1.90706 1.13368 1.86749 1.51589 1.23085 0.91149 0.96426 1.09485 1.74658 1.15365 0.97509 1.17186 1.84763 1.34679 1.11101 1.64277 1.24861 0.84052 0.97816 1.01570 1.20917 0.99920 0.88955 1.06746 1.20038 0.88050 0.98559 1.01673 1.21742 1.02764 0.92038 0.99104 1.21558 0.95754 0.99125 0.99289 1.21615 0.94981 1.02672 0.96078 1.20584 1.04398 0.80257 1.02208 1.22071 0.97274 0.81689 0.95569 0.86361 1.23118 0.98319 0.98592 0.96705 1.21745 0.95013 0.97013 0.84615 1.44789 1.44218 1.38849 1.06867 1.20001 1.08394 1.16076 1.03111 0.92221 1.27069 0.91687 1.08324 0.99943 1.70903 1.35819 1.13546 1.38584 0.82839 0.75658 0.71788 0.75665 1.21638 1.20267 1.20779 1.21693 0.92289 0.90819 0.94864 0.91892 0.90473 0.91185 0.91288 0.90329 0.90224 0.90794 0.91613 0.89430 0.93111 0.87883 0.87073 0.86095 0.88738 0.89631 0.95625 0.95793 0.93099 0.93771 0.96876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.27 7.58 127.77 0.97 4.24 16 2 N -0.58 -21.57 2.82 -818.82 -2.31 -23.88 16 3 C 0.59 21.33 7.69 86.93 0.67 22.00 16 4 O -0.55 -20.88 14.86 -3.69 -0.05 -20.93 16 5 C -0.05 -1.41 6.80 42.69 0.29 -1.12 16 6 N -0.35 -10.44 8.97 -49.02 -0.44 -10.88 16 7 O 0.13 3.09 11.19 74.81 0.84 3.93 16 8 C -0.02 -0.37 6.63 24.90 0.17 -0.20 16 9 C -0.16 -3.86 5.72 -20.02 -0.11 -3.98 16 10 C -0.05 -0.92 5.42 29.77 0.16 -0.76 16 11 C -0.12 -1.42 5.55 30.60 0.17 -1.25 16 12 C -0.12 -0.92 5.64 30.36 0.17 -0.74 16 13 C -0.12 -0.90 5.63 30.54 0.17 -0.73 16 14 C -0.04 -0.32 5.55 29.89 0.17 -0.16 16 15 C 0.14 5.17 3.58 46.18 0.17 5.34 16 16 H 0.12 4.22 7.01 -2.39 -0.02 4.20 16 17 C -0.13 -4.75 6.54 32.07 0.21 -4.54 16 18 C 0.14 6.68 4.33 86.94 0.38 7.06 16 19 N -0.62 -32.10 2.91 -691.53 -2.01 -34.11 16 20 C -0.35 -20.07 10.05 84.03 0.84 -19.22 16 21 H 0.06 3.44 7.96 -2.91 -0.02 3.42 16 22 C -0.07 -4.30 5.10 84.86 0.43 -3.87 16 23 N -0.95 -58.03 12.80 21.65 0.28 -57.75 16 24 Si 1.12 51.88 30.00 68.60 2.06 53.94 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.13 5.72 6.28 86.73 0.54 6.27 16 29 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 30 H 0.08 2.81 5.86 -2.39 -0.01 2.79 16 31 H 0.07 3.13 4.87 -2.39 -0.01 3.12 16 32 H 0.07 1.72 7.00 -2.39 -0.02 1.70 16 33 H 0.08 1.58 7.83 -2.39 -0.02 1.56 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.82 5.69 -2.39 -0.01 0.80 16 36 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 37 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 38 H 0.05 0.61 7.79 -2.39 -0.02 0.59 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.12 0.65 6.38 -2.38 -0.02 0.64 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.09 2.86 8.14 -2.39 -0.02 2.85 16 44 H 0.03 1.28 4.22 -2.39 -0.01 1.27 16 45 H 0.02 1.26 7.70 -2.39 -0.02 1.24 16 46 H 0.26 15.87 5.82 -92.71 -0.54 15.33 16 47 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.01 0.62 8.04 -2.39 -0.02 0.60 16 Total: -1.00 -72.27 362.31 4.96 -67.31 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.21 Total: 14.03 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.39 Total: 8.34 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -4.49 Total: -126.62 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.78 Total: -17.00 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.06 Total: 53.94 kcal Total: -72.27 4.96 -67.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033466834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.941 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds