Wall clock time and date at job start Tue Mar 31 2020 17:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35743 * 117.00284 * 2 1 4 4 C 1.39281 * 120.84307 * 359.97438 * 3 2 1 5 5 C 1.37951 * 119.09259 * 180.02562 * 4 3 2 6 6 N 1.31974 * 120.82533 * 359.97438 * 5 4 3 7 7 C 1.31952 * 121.85994 * 359.72372 * 6 5 4 8 8 C 1.37990 * 120.82324 * 0.54965 * 7 6 5 9 9 C 1.50699 * 120.45691 * 179.74732 * 8 7 6 10 10 C 1.50698 * 109.47159 * 264.71672 * 9 8 7 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48500 * 109.47013 * 269.99639 * 24 22 20 26 26 H 1.48495 * 109.47429 * 29.99922 * 24 22 20 27 27 H 1.48503 * 109.47030 * 150.00168 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.09001 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47085 * 300.00130 * 1 2 3 31 31 H 1.09006 * 109.47237 * 59.99760 * 1 2 3 32 32 H 1.07997 * 120.45963 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.58974 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.58910 * 180.28941 * 7 6 5 35 35 H 1.09001 * 109.46901 * 144.71073 * 9 8 7 36 36 H 1.09005 * 109.46747 * 24.71811 * 9 8 7 37 37 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 39 39 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 40 40 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 41 41 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 42 42 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 43 43 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 44 44 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 45 45 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 46 46 H 0.96994 * 120.00074 * 353.65763 * 23 22 20 47 47 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 48 48 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6458 -0.0005 7 6 4.0230 2.5510 0.0059 8 6 3.4346 1.3029 0.0010 9 6 4.2838 0.0579 0.0027 10 6 4.4653 -0.4283 -1.4121 11 8 3.9548 0.1763 -2.3313 12 7 5.1939 -1.5355 -1.6559 13 6 5.3708 -2.0079 -3.0313 14 1 4.4598 -1.8174 -3.5987 15 6 5.6588 -3.5293 -3.0185 16 6 6.3345 -3.9550 -4.2897 17 6 7.8231 -4.0041 -3.9608 18 6 8.5294 -2.7426 -4.1809 19 7 7.8658 -1.6982 -3.3302 20 6 8.5051 -1.1852 -2.2332 21 1 8.0721 -0.3549 -1.6950 22 6 9.7097 -1.7322 -1.8130 23 7 9.8795 -3.0374 -1.8250 24 14 11.0896 -0.6160 -1.2305 25 1 11.9464 -0.2444 -2.3850 26 1 10.5119 0.6118 -0.6272 27 1 11.9076 -1.3283 -0.2161 28 6 6.5491 -1.2510 -3.6817 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2245 2.3567 -0.0014 33 1 1.4008 4.5173 -0.0011 34 1 5.0999 2.6328 0.0108 35 1 3.7929 -0.7159 0.5928 36 1 5.2578 0.2832 0.4373 37 1 5.6019 -2.0193 -0.9207 38 1 4.7191 -4.0712 -2.9131 39 1 6.3051 -3.7641 -2.1728 40 1 6.1463 -3.2272 -5.0790 41 1 5.9829 -4.9406 -4.5946 42 1 8.2885 -4.7736 -4.5767 43 1 7.9349 -4.2855 -2.9137 44 1 8.4640 -2.4604 -5.2317 45 1 9.5748 -2.8472 -3.8904 46 1 9.1352 -3.6213 -2.0389 47 1 6.4632 -0.1994 -3.4082 48 1 6.4429 -1.3247 -4.7640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034269882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:36 Heat of formation + Delta-G solvation = -27.265980 kcal Electronic energy + Delta-G solvation = -29838.680144 eV Core-core repulsion = 25894.188641 eV Total energy + Delta-G solvation = -3944.491503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84614 -40.79980 -39.47304 -39.15485 -36.06500 -34.87509 -34.38884 -32.96507 -32.21454 -31.68036 -29.13460 -28.38994 -27.66899 -25.73647 -24.68164 -23.91782 -23.54628 -22.15322 -21.13155 -20.81711 -19.33085 -18.98788 -18.19671 -18.06948 -17.34094 -16.77630 -16.67915 -16.34986 -16.20775 -15.92841 -15.73636 -15.53802 -15.26161 -15.13016 -14.91395 -14.46708 -14.32311 -14.17946 -13.93389 -13.75180 -13.49591 -13.23660 -12.89738 -12.73845 -12.51416 -12.49239 -12.41337 -12.14236 -12.13495 -11.90905 -11.73210 -11.53388 -11.27580 -11.17196 -10.90529 -10.54545 -10.33354 -10.11805 -9.94120 -9.74613 -8.83377 -8.23408 -5.04069 0.06445 0.33284 1.63460 1.65589 1.74232 1.85057 2.16605 2.34537 2.70143 2.85577 3.17297 3.44605 3.48014 3.63465 3.79656 3.80664 3.90012 4.01070 4.02474 4.18850 4.27027 4.32639 4.33581 4.38614 4.42595 4.45521 4.49168 4.60108 4.66726 4.69475 4.72826 4.78453 4.90938 4.93740 5.04882 5.07974 5.14115 5.16884 5.31603 5.39866 5.49969 5.56386 5.62779 5.69558 5.95984 6.19903 6.52533 6.67284 7.00735 7.13091 7.35072 7.90115 8.35443 9.09445 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003597 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.832186 B = 7782.777307 C = 9191.907190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.170 3.830 4 C -0.258 4.258 5 C 0.124 3.876 6 N -0.532 5.532 7 C 0.128 3.872 8 C -0.161 4.161 9 C -0.083 4.083 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.703 5.703 13 C 0.124 3.876 14 H 0.072 0.928 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.127 4.127 18 C 0.131 3.869 19 N -0.597 5.597 20 C -0.347 4.347 21 H 0.047 0.953 22 C -0.054 4.054 23 N -0.927 5.927 24 Si 1.080 2.920 25 H -0.296 1.296 26 H -0.283 1.283 27 H -0.298 1.298 28 C 0.159 3.841 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.170 0.830 33 H 0.189 0.811 34 H 0.161 0.839 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.404 0.596 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.271 0.729 47 H 0.009 0.991 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 2.497 4.080 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.116 3.884 4 C -0.279 4.279 5 C -0.032 4.032 6 N -0.244 5.244 7 C -0.027 4.027 8 C -0.164 4.164 9 C -0.123 4.123 10 C 0.303 3.697 11 O -0.467 6.467 12 N -0.352 5.352 13 C 0.016 3.984 14 H 0.090 0.910 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.166 4.166 18 C 0.007 3.993 19 N -0.320 5.320 20 C -0.476 4.476 21 H 0.065 0.935 22 C -0.253 4.253 23 N -0.571 5.571 24 Si 0.908 3.092 25 H -0.223 1.223 26 H -0.208 1.208 27 H -0.225 1.225 28 C 0.029 3.971 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.187 0.813 33 H 0.206 0.794 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.239 0.761 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.028 0.972 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.677 3.545 3.942 18.455 hybrid contribution -1.642 -0.882 -0.161 1.870 sum -19.318 2.664 3.781 19.864 Atomic orbital electron populations 1.23438 0.75764 1.05898 1.02680 1.86045 1.24047 1.26107 1.87418 1.19308 0.91816 0.85685 0.91622 1.22480 1.02880 0.92199 1.10332 1.23119 0.89814 0.98503 0.91767 1.67738 1.08453 1.32078 1.16177 1.22671 1.00709 0.86556 0.92775 1.19854 0.91708 0.96410 1.08443 1.20384 1.01911 0.96210 0.93825 1.20841 0.77273 0.79925 0.91618 1.90628 1.51065 1.57354 1.47674 1.45967 1.51721 1.27870 1.09655 1.22485 0.98237 0.94832 0.82847 0.90969 1.21575 1.00428 0.93165 0.98793 1.20929 0.94321 1.01773 0.96994 1.20928 0.96494 0.98164 1.01032 1.20545 0.97785 0.88373 0.92551 1.44405 1.12208 1.46977 1.28410 1.19893 1.06283 1.12600 1.08803 0.93459 1.26177 1.01173 0.97702 1.00270 1.70875 1.37220 1.03536 1.45430 0.83319 0.75405 0.74770 0.75683 1.22335 1.20838 1.22494 1.20573 0.84791 0.95162 0.96542 0.86297 0.90434 0.91883 0.81253 0.79447 0.82159 0.86195 0.86531 0.76134 0.91109 0.92956 0.91673 0.89547 0.92649 0.93379 0.94705 0.91989 0.91596 0.97244 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.33 16 2 O -0.32 -7.61 9.77 -90.68 -0.89 -8.49 16 3 C 0.17 4.36 6.70 22.76 0.15 4.51 16 4 C -0.26 -5.29 9.11 22.45 0.20 -5.08 16 5 C 0.12 2.72 11.17 84.60 0.95 3.66 16 6 N -0.53 -15.10 10.36 -196.09 -2.03 -17.13 16 7 C 0.13 3.75 10.83 84.62 0.92 4.67 16 8 C -0.16 -4.60 4.40 -19.68 -0.09 -4.69 16 9 C -0.08 -2.29 5.61 29.10 0.16 -2.13 16 10 C 0.52 18.13 7.63 87.66 0.67 18.80 16 11 O -0.59 -24.84 15.70 -3.04 -0.05 -24.89 16 12 N -0.70 -24.26 5.08 -437.29 -2.22 -26.48 16 13 C 0.12 4.46 2.91 46.10 0.13 4.59 16 14 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 15 C -0.10 -3.24 5.23 30.30 0.16 -3.08 16 16 C -0.10 -3.14 5.76 29.51 0.17 -2.97 16 17 C -0.13 -4.77 4.96 28.36 0.14 -4.62 16 18 C 0.13 5.81 5.22 83.58 0.44 6.25 16 19 N -0.60 -28.23 2.62 -708.84 -1.86 -30.09 16 20 C -0.35 -18.34 9.46 84.03 0.80 -17.55 16 21 H 0.05 2.62 8.05 -2.91 -0.02 2.59 16 22 C -0.05 -2.91 4.53 84.86 0.38 -2.53 16 23 N -0.93 -51.90 11.99 21.65 0.26 -51.64 16 24 Si 1.08 50.13 30.06 68.60 2.06 52.19 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 C 0.16 6.75 4.74 87.43 0.41 7.16 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 0.69 7.71 -2.39 -0.02 0.67 16 31 H 0.06 0.77 7.71 -2.38 -0.02 0.75 16 32 H 0.17 2.16 6.47 -2.91 -0.02 2.14 16 33 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.12 2.81 7.77 -2.39 -0.02 2.80 16 36 H 0.12 2.92 8.06 -2.38 -0.02 2.90 16 37 H 0.40 13.19 8.44 -92.71 -0.78 12.41 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.91 6.58 -2.39 -0.02 1.90 16 40 H 0.06 2.01 6.28 -2.39 -0.02 1.99 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.05 2.06 4.65 -2.39 -0.01 2.05 16 44 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 45 H 0.06 3.17 5.61 -2.38 -0.01 3.16 16 46 H 0.27 14.79 4.95 -92.71 -0.46 14.33 16 47 H 0.01 0.45 7.80 -2.39 -0.02 0.43 16 48 H 0.04 1.74 6.89 -2.39 -0.02 1.73 16 Total: -1.00 -70.81 376.36 2.50 -68.30 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.51 Total: 29.91 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.71 Total: 8.31 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -5.85 Total: -125.34 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.93 Total: -33.38 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.06 Total: 52.19 kcal Total: -70.81 2.50 -68.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034269882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.038 kcal (2) G-P(sol) polarization free energy of solvation -70.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds