Wall clock time and date at job start Tue Mar 31 2020 17:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35910 * 117.00418 * 2 1 4 4 C 1.39136 * 120.47490 * 179.97438 * 3 2 1 5 5 C 1.38538 * 118.37570 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.21909 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.55725 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47087 * 125.00029 * 7 6 5 9 9 O 1.21277 * 120.00365 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00441 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.18411 * 34.55847 * 11 10 8 13 13 C 1.47089 * 109.33307 * 154.12845 * 11 10 8 14 14 C 1.52565 * 114.32525 * 183.06026 * 13 11 10 15 15 C 1.50887 * 109.36473 * 274.98993 * 14 13 11 16 16 C 1.53947 * 110.09355 * 91.88556 * 15 14 13 17 17 N 1.47583 * 112.12229 * 319.45195 * 16 15 14 18 18 C 1.36936 * 118.62322 * 137.87312 * 17 16 15 19 19 H 1.07998 * 119.99825 * 206.49894 * 18 17 16 20 20 C 1.38816 * 120.00147 * 26.50043 * 18 17 16 21 21 N 1.31620 * 120.00010 * 15.71271 * 20 18 17 22 22 Si 1.86801 * 120.00173 * 195.70570 * 20 18 17 23 23 H 1.48498 * 109.46655 * 90.00102 * 22 20 18 24 24 H 1.48493 * 109.47402 * 210.00226 * 22 20 18 25 25 H 1.48497 * 109.46980 * 330.00537 * 22 20 18 26 26 C 1.44576 * 122.73176 * 317.82452 * 17 16 15 27 27 N 1.31853 * 120.88653 * 0.25668 * 6 5 4 28 28 C 1.31841 * 121.77919 * 359.47125 * 27 6 5 29 29 H 1.08997 * 109.47338 * 300.00616 * 1 2 3 30 30 H 1.09006 * 109.47005 * 59.99807 * 1 2 3 31 31 H 1.09000 * 109.47637 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.81195 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.38988 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.46815 * 5.00229 * 7 6 5 35 35 H 1.09000 * 109.47068 * 244.99980 * 7 6 5 36 36 H 0.97006 * 119.99442 * 359.97438 * 10 8 7 37 37 H 1.08996 * 108.51420 * 304.31820 * 13 11 10 38 38 H 1.08999 * 108.50739 * 61.81154 * 13 11 10 39 39 H 1.09002 * 109.49257 * 34.95830 * 14 13 11 40 40 H 1.09004 * 109.49194 * 155.00137 * 14 13 11 41 41 H 1.08996 * 109.36929 * 212.07878 * 15 14 13 42 42 H 1.08996 * 109.36299 * 331.82342 * 15 14 13 43 43 H 1.09004 * 108.94812 * 80.12255 * 16 15 14 44 44 H 1.08993 * 108.94943 * 198.75573 * 16 15 14 45 45 H 0.97000 * 120.00099 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.44873 * 330.73458 * 26 17 16 47 47 H 1.09000 * 109.44670 * 210.79313 * 26 17 16 48 48 H 1.07998 * 119.65777 * 180.26950 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4348 1.2952 0.0005 5 6 4.0182 2.5517 0.0000 6 6 3.2080 3.6720 -0.0006 7 6 3.8346 5.0426 -0.0006 8 6 3.3027 5.8380 -1.1648 9 8 2.4941 5.3411 -1.9199 10 7 3.7256 7.1017 -1.3670 11 6 3.2082 7.8752 -2.4983 12 1 2.1667 7.6040 -2.6712 13 6 3.2924 9.3101 -2.1863 14 6 2.7128 10.2225 -3.2630 15 6 3.7626 10.4851 -4.3145 16 6 3.6497 9.4469 -5.4455 17 7 3.3772 8.0910 -4.9302 18 6 2.4601 7.3127 -5.5844 19 1 1.9253 6.5425 -5.0485 20 6 2.2177 7.5135 -6.9364 21 7 3.0628 8.2178 -7.6590 22 14 0.6922 6.7841 -7.7304 23 1 -0.4262 7.7567 -7.6395 24 1 0.9723 6.4838 -9.1574 25 1 0.3179 5.5320 -7.0252 26 6 4.0391 7.5503 -3.7641 27 7 1.8945 3.5573 0.0045 28 6 1.3002 2.3804 0.0000 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0432 0.4028 0.0005 33 1 5.0933 2.6549 0.0008 34 1 4.9167 4.9473 -0.0898 35 1 3.5903 5.5537 0.9306 36 1 4.3721 7.4992 -0.7628 37 1 2.7591 9.4934 -1.2535 38 1 4.3403 9.5712 -2.0388 39 1 1.8503 9.7400 -3.7229 40 1 2.4045 11.1661 -2.8128 41 1 3.6203 11.4845 -4.7256 42 1 4.7520 10.4179 -3.8620 43 1 2.8414 9.7399 -6.1155 44 1 4.5841 9.4315 -6.0064 45 1 2.8936 8.3579 -8.6038 46 1 5.0305 7.9938 -3.6712 47 1 4.1335 6.4695 -3.8689 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034366500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:37 Heat of formation + Delta-G solvation = -38.744811 kcal Electronic energy + Delta-G solvation = -28991.659723 eV Core-core repulsion = 25046.670461 eV Total energy + Delta-G solvation = -3944.989262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74326 -40.82278 -39.43134 -38.78875 -36.15446 -34.77646 -33.49913 -33.38214 -32.85699 -31.53188 -29.07364 -28.16253 -27.73934 -25.81547 -24.95377 -24.33697 -23.25390 -21.56434 -21.35719 -20.77256 -19.14893 -18.60795 -18.26790 -17.75564 -17.60129 -16.91083 -16.81122 -16.44974 -16.30232 -15.94201 -15.52244 -15.26889 -15.07409 -14.93190 -14.72551 -14.38271 -14.16026 -14.00036 -13.89246 -13.77778 -13.18576 -13.11965 -13.00725 -12.95526 -12.80674 -12.77488 -12.46671 -12.31350 -12.28859 -12.06028 -11.62625 -11.46078 -11.36552 -11.12232 -10.80624 -10.64241 -10.50955 -10.32307 -10.02363 -9.34827 -8.63452 -7.89462 -5.34691 0.11500 0.32071 1.38354 1.38764 1.49360 1.87152 2.21414 2.28054 2.49249 2.84688 3.22634 3.34948 3.65946 3.72017 3.75210 3.94143 3.96512 4.11249 4.15268 4.29006 4.31584 4.33020 4.39259 4.47974 4.53642 4.56166 4.62152 4.66955 4.73050 4.75565 4.78754 4.96999 5.01808 5.07274 5.11211 5.15298 5.26306 5.31668 5.38193 5.48341 5.53899 5.62194 5.70945 5.75672 5.83390 6.19452 6.39326 6.79918 7.05775 7.17135 7.55346 7.94835 8.28262 9.14444 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.003187 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.713387 B = 8784.413556 C =10477.358242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.063 3.937 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.082 3.918 7 C -0.076 4.076 8 C 0.504 3.496 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.137 3.863 12 H 0.035 0.965 13 C -0.107 4.107 14 C -0.099 4.099 15 C -0.130 4.130 16 C 0.184 3.816 17 N -0.598 5.598 18 C -0.260 4.260 19 H 0.043 0.957 20 C -0.041 4.041 21 N -0.929 5.929 22 Si 0.955 3.045 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.161 3.839 27 N -0.460 5.460 28 C 0.003 3.997 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.166 0.834 33 H 0.181 0.819 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.038 0.962 44 H -0.004 1.004 45 H 0.250 0.750 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.941 -7.183 22.562 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.016 3.984 4 C -0.143 4.143 5 C -0.138 4.138 6 C -0.057 4.057 7 C -0.115 4.115 8 C 0.291 3.709 9 O -0.456 6.456 10 N -0.364 5.364 11 C 0.029 3.971 12 H 0.054 0.946 13 C -0.145 4.145 14 C -0.138 4.138 15 C -0.168 4.168 16 C 0.059 3.941 17 N -0.320 5.320 18 C -0.391 4.391 19 H 0.060 0.940 20 C -0.236 4.236 21 N -0.575 5.575 22 Si 0.783 3.217 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.210 1.210 26 C 0.033 3.967 27 N -0.170 5.170 28 C -0.155 4.155 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.184 0.816 33 H 0.198 0.802 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.014 0.986 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.029 0.971 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.946 -6.947 21.865 23.130 hybrid contribution -0.747 -1.061 -1.020 1.650 sum 2.199 -8.008 20.846 22.439 Atomic orbital electron populations 1.23374 0.76408 1.05971 1.02086 1.86033 1.23407 1.25636 1.88534 1.20263 0.94084 0.85757 0.98313 1.21272 0.91470 0.99942 1.01632 1.22199 1.02942 0.90718 0.97972 1.20973 0.89050 0.96159 0.99485 1.20652 1.02939 0.90139 0.97811 1.21138 0.81034 0.82206 0.86533 1.90777 1.35300 1.70621 1.48950 1.45895 1.46703 1.13755 1.30081 1.20595 0.97666 0.92313 0.86555 0.94640 1.20502 1.02791 0.92176 0.99036 1.20818 0.98147 0.98980 0.95806 1.21935 0.99294 0.98601 0.96996 1.20866 0.97567 0.82529 0.93089 1.43719 1.46717 1.12162 1.29380 1.19303 1.14307 1.14407 0.91112 0.93963 1.25585 1.00794 1.00927 0.96323 1.70200 1.35796 1.45334 1.06201 0.85462 0.80581 0.78144 0.77467 1.20685 1.21185 1.21043 1.20987 0.93947 0.95208 0.86602 1.67245 1.13179 1.27402 1.09171 1.23043 1.01155 0.87264 1.04079 0.91346 0.92741 0.85492 0.81643 0.80205 0.83230 0.84715 0.74612 0.90818 0.89772 0.94702 0.89931 0.91108 0.91308 0.94379 0.98571 0.94031 0.92993 0.97091 0.82114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.82 113.37 1.11 1.34 16 2 O -0.32 -6.95 10.51 -92.54 -0.97 -7.93 16 3 C 0.06 1.54 6.71 22.60 0.15 1.70 16 4 C -0.12 -2.42 10.13 22.56 0.23 -2.20 16 5 C -0.12 -2.34 9.70 22.35 0.22 -2.12 16 6 C 0.08 2.11 5.76 42.56 0.25 2.36 16 7 C -0.08 -1.48 6.10 29.10 0.18 -1.30 16 8 C 0.50 15.91 7.73 87.66 0.68 16.59 16 9 O -0.58 -26.37 14.99 -3.02 -0.05 -26.41 16 10 N -0.71 -19.26 5.05 -448.29 -2.27 -21.52 16 11 C 0.14 4.94 2.35 43.79 0.10 5.04 16 12 H 0.04 1.67 7.55 -2.39 -0.02 1.65 16 13 C -0.11 -3.04 4.55 28.61 0.13 -2.91 16 14 C -0.10 -3.25 5.51 29.76 0.16 -3.08 16 15 C -0.13 -4.55 5.71 30.23 0.17 -4.38 16 16 C 0.18 9.03 4.67 86.49 0.40 9.43 16 17 N -0.60 -31.45 2.27 -698.44 -1.58 -33.03 16 18 C -0.26 -15.75 9.44 84.03 0.79 -14.96 16 19 H 0.04 2.74 7.88 -2.91 -0.02 2.71 16 20 C -0.04 -2.43 4.87 84.86 0.41 -2.02 16 21 N -0.93 -56.95 11.01 21.65 0.24 -56.72 16 22 Si 0.95 48.93 29.58 68.60 2.03 50.96 16 23 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.28 -14.74 7.11 99.48 0.71 -14.04 16 26 C 0.16 7.10 5.24 87.37 0.46 7.56 16 27 N -0.46 -14.61 9.23 -183.49 -1.69 -16.30 16 28 C 0.00 0.08 10.22 84.80 0.87 0.94 16 29 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 30 H 0.05 0.84 7.68 -2.38 -0.02 0.82 16 31 H 0.13 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.18 1.97 7.95 -2.91 -0.02 1.94 16 34 H 0.15 1.58 7.87 -2.39 -0.02 1.56 16 35 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.42 6.96 8.58 -92.70 -0.80 6.17 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.93 7.36 -2.39 -0.02 1.91 16 39 H 0.03 1.44 7.48 -2.39 -0.02 1.42 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 2.11 7.32 -2.39 -0.02 2.10 16 43 H 0.04 2.12 6.33 -2.38 -0.02 2.10 16 44 H 0.00 -0.20 8.03 -2.39 -0.02 -0.22 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.05 2.04 8.07 -2.39 -0.02 2.02 16 47 H 0.01 0.54 7.98 -2.39 -0.02 0.52 16 48 H 0.16 3.87 6.32 -2.91 -0.02 3.85 16 Total: -1.00 -87.05 383.60 2.19 -84.86 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.17 Total: 14.10 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 6.31 Total: 12.00 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.30 Total: -127.58 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.02 Total: -34.34 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.03 Total: 50.96 kcal Total: -87.05 2.19 -84.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034366500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.115 kcal (2) G-P(sol) polarization free energy of solvation -87.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds