Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 116.99547 * 2 1 4 4 C 1.39143 * 120.47181 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.37323 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.22375 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.55679 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47159 * 125.00075 * 7 6 5 9 9 O 1.21282 * 120.00078 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99960 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00034 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.35805 * 324.71975 * 11 10 8 13 13 C 1.54845 * 109.35943 * 204.99615 * 11 10 8 14 14 C 1.50121 * 110.81445 * 201.06155 * 13 11 10 15 15 C 1.52527 * 105.41433 * 97.68551 * 14 13 11 16 16 C 1.46238 * 114.27438 * 270.58765 * 15 14 13 17 17 N 1.50164 * 107.53002 * 58.41187 * 16 15 14 18 18 C 1.36940 * 120.53765 * 109.56644 * 17 16 15 19 19 H 1.08004 * 120.00183 * 172.84646 * 18 17 16 20 20 C 1.38815 * 119.99854 * 352.84170 * 18 17 16 21 21 N 1.31620 * 119.99900 * 319.29777 * 20 18 17 22 22 Si 1.86797 * 119.99615 * 139.29920 * 20 18 17 23 23 H 1.48504 * 109.46872 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47197 * 299.99684 * 22 20 18 25 25 H 1.48504 * 109.47341 * 60.00223 * 22 20 18 26 26 C 1.43430 * 118.92544 * 289.83407 * 17 16 15 27 27 N 1.31840 * 120.88392 * 0.25712 * 6 5 4 28 28 C 1.31845 * 121.78252 * 359.47042 * 27 6 5 29 29 H 1.08997 * 109.47588 * 299.99594 * 1 2 3 30 30 H 1.09002 * 109.47395 * 60.00073 * 1 2 3 31 31 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.81438 * 359.95410 * 4 3 2 33 33 H 1.08009 * 120.38728 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46901 * 4.99477 * 7 6 5 35 35 H 1.09005 * 109.46747 * 245.00214 * 7 6 5 36 36 H 0.97001 * 120.00173 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.20678 * 80.72016 * 13 11 10 38 38 H 1.09000 * 109.17081 * 321.38192 * 13 11 10 39 39 H 1.08998 * 110.25305 * 338.70962 * 14 13 11 40 40 H 1.09002 * 110.37182 * 216.71684 * 14 13 11 41 41 H 1.09004 * 108.51900 * 149.35009 * 15 14 13 42 42 H 1.08994 * 108.39931 * 31.74574 * 15 14 13 43 43 H 1.08996 * 109.85131 * 298.89823 * 16 15 14 44 44 H 1.09009 * 109.89776 * 177.94655 * 16 15 14 45 45 H 0.97001 * 119.99999 * 353.66198 * 21 20 18 46 46 H 1.09001 * 108.15893 * 213.03183 * 26 17 16 47 47 H 1.09000 * 108.16547 * 329.60142 * 26 17 16 48 48 H 1.07996 * 119.66243 * 180.26943 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4348 1.2954 -0.0005 5 6 4.0180 2.5520 -0.0011 6 6 3.2077 3.6723 -0.0005 7 6 3.8341 5.0429 -0.0005 8 6 3.3013 5.8388 -1.1639 9 8 2.4928 5.3418 -1.9191 10 7 3.7239 7.1025 -1.3658 11 6 3.2055 7.8764 -2.4965 12 1 3.0442 7.2120 -3.3455 13 6 4.2333 8.9669 -2.8864 14 6 3.5714 10.0733 -3.6555 15 6 3.2920 11.1683 -2.6311 16 6 1.9945 11.0529 -1.9665 17 7 1.9512 9.7139 -1.2881 18 6 1.9980 9.6240 0.0775 19 1 1.8505 8.6697 0.5612 20 6 2.2351 10.7594 0.8401 21 7 3.1298 11.6411 0.4471 22 14 1.2845 11.0357 2.4242 23 1 1.7206 12.3113 3.0470 24 1 -0.1684 11.1019 2.1245 25 1 1.5462 9.9133 3.3608 26 6 1.8660 8.5305 -2.0939 27 7 1.8943 3.5575 0.0056 28 6 1.3001 2.3805 0.0010 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0433 0.4031 -0.0002 33 1 5.0931 2.6553 -0.0019 34 1 4.9162 4.9477 -0.0904 35 1 3.5905 5.5536 0.9312 36 1 4.3709 7.4998 -0.7621 37 1 5.0144 8.5201 -3.5014 38 1 4.6806 9.3773 -1.9810 39 1 2.6383 9.7212 -4.0954 40 1 4.2376 10.4458 -4.4336 41 1 3.3383 12.1338 -3.1350 42 1 4.0738 11.1372 -1.8723 43 1 1.1940 11.1206 -2.7031 44 1 1.8846 11.8462 -1.2269 45 1 3.6880 11.4550 -0.3241 46 1 1.2822 7.7892 -1.5482 47 1 1.3227 8.7786 -3.0057 48 1 0.2215 2.3264 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034366503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = -3.044830 kcal Electronic energy + Delta-G solvation = -29314.496157 eV Core-core repulsion = 25371.054963 eV Total energy + Delta-G solvation = -3943.441195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.80503 -39.44769 -38.39385 -37.64793 -34.35515 -33.23072 -32.48564 -32.43116 -31.06555 -30.01448 -28.23965 -27.25318 -25.88886 -24.19786 -23.50654 -22.87062 -22.16109 -20.53692 -19.70222 -19.19979 -18.32213 -17.27962 -17.06151 -16.56398 -16.20606 -16.02314 -15.39043 -15.17511 -14.73060 -14.52954 -14.33772 -14.07653 -13.86967 -13.61060 -13.47943 -13.07816 -12.97503 -12.67252 -12.41548 -12.22091 -12.13739 -12.03699 -11.99253 -11.75655 -11.47635 -11.00895 -10.80502 -10.54586 -10.33508 -10.12533 -9.99907 -9.81041 -9.78118 -9.71176 -9.46507 -9.40880 -9.21952 -8.59742 -8.42648 -8.09309 -6.91367 -6.13620 -2.97942 1.03220 1.23629 2.96049 3.16868 3.53405 3.55950 3.61328 3.76933 3.93024 4.29045 4.53341 4.60583 4.64548 4.76899 4.88428 4.95222 5.15954 5.18532 5.21783 5.24511 5.32238 5.35986 5.39086 5.43782 5.47703 5.63925 5.74353 5.87153 5.98099 5.99809 6.04350 6.06964 6.28306 6.38105 6.39248 6.44022 6.63297 6.72827 6.73967 6.89843 6.97469 7.01280 7.19615 7.26478 7.28066 8.01571 8.04096 8.12843 8.56916 8.80076 9.11953 9.89880 10.34776 11.16860 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003067 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.786573 B = 9126.981982 C =10178.121019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.066 3.934 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.116 3.884 7 C -0.091 4.091 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.707 5.707 11 C 0.117 3.883 12 H 0.072 0.928 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.134 4.134 16 C 0.129 3.871 17 N -0.587 5.587 18 C -0.349 4.349 19 H 0.064 0.936 20 C -0.017 4.017 21 N -0.903 5.903 22 Si 1.035 2.965 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.295 1.295 26 C 0.154 3.846 27 N -0.416 5.416 28 C 0.028 3.972 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.398 0.602 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.023 0.977 44 H 0.094 0.906 45 H 0.272 0.728 46 H 0.042 0.958 47 H 0.034 0.966 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -16.988 -2.871 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.019 3.981 4 C -0.136 4.136 5 C -0.149 4.149 6 C -0.023 4.023 7 C -0.132 4.132 8 C 0.303 3.697 9 O -0.416 6.416 10 N -0.357 5.357 11 C 0.009 3.991 12 H 0.090 0.910 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.174 4.174 16 C 0.005 3.995 17 N -0.308 5.308 18 C -0.476 4.476 19 H 0.082 0.918 20 C -0.219 4.219 21 N -0.546 5.546 22 Si 0.865 3.135 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.223 1.223 26 C 0.023 3.977 27 N -0.124 5.124 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.232 0.768 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.275 -15.706 -2.133 15.902 hybrid contribution 0.912 -1.642 -0.863 2.067 sum 2.187 -17.348 -2.997 17.740 Atomic orbital electron populations 1.23108 0.78053 1.04134 1.01808 1.86039 1.21634 1.26243 1.88830 1.20093 0.93304 0.85696 0.99017 1.20815 0.91614 0.98605 1.02582 1.21791 1.01198 0.91662 1.00226 1.20510 0.89209 0.94372 0.98242 1.20564 1.00682 0.91802 1.00111 1.20056 0.81882 0.81934 0.85849 1.90676 1.33232 1.70588 1.47056 1.45952 1.45879 1.13090 1.30763 1.22697 0.96909 0.91635 0.87817 0.90975 1.21662 0.97143 0.96014 1.00112 1.20942 1.00228 0.96400 0.97289 1.21090 1.01868 0.96620 0.97786 1.20588 0.93376 0.89844 0.95685 1.44357 1.84901 0.99101 1.02468 1.19908 1.49037 0.97220 0.81482 0.91788 1.25368 0.98762 0.94913 1.02888 1.70874 1.16023 1.41127 1.26543 0.83967 0.77222 0.75779 0.76541 1.21456 1.22401 1.22270 1.20606 0.93048 0.89651 0.94347 1.67343 1.11528 1.26088 1.07488 1.22902 1.00495 0.86937 1.02807 0.92360 0.92298 0.88054 0.84170 0.84114 0.87797 0.87001 0.76782 0.93788 0.91015 0.91806 0.92716 0.94281 0.91040 0.95920 0.88769 0.91455 0.93938 0.94749 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.17 16 2 O -0.32 -3.40 10.51 -19.46 -0.20 -3.61 16 3 C 0.07 0.81 6.71 -39.07 -0.26 0.55 16 4 C -0.11 -1.23 10.13 -39.14 -0.40 -1.63 16 5 C -0.13 -1.47 9.70 -39.46 -0.38 -1.86 16 6 C 0.12 1.68 5.76 -82.58 -0.48 1.21 16 7 C -0.09 -1.24 6.10 -29.04 -0.18 -1.42 16 8 C 0.52 9.13 7.57 -10.99 -0.08 9.05 16 9 O -0.54 -11.42 15.01 5.56 0.08 -11.34 16 10 N -0.71 -12.25 5.08 -52.15 -0.26 -12.52 16 11 C 0.12 2.16 2.91 -66.22 -0.19 1.97 16 12 H 0.07 1.36 7.58 -51.93 -0.39 0.96 16 13 C -0.11 -1.88 5.23 -27.19 -0.14 -2.02 16 14 C -0.11 -1.85 5.76 -28.41 -0.16 -2.01 16 15 C -0.13 -2.61 4.96 -30.19 -0.15 -2.76 16 16 C 0.13 2.89 5.22 -5.21 -0.03 2.86 16 17 N -0.59 -13.94 2.62 -175.40 -0.46 -14.40 16 18 C -0.35 -9.23 9.46 -15.06 -0.14 -9.37 16 19 H 0.06 1.77 8.05 -52.48 -0.42 1.35 16 20 C -0.02 -0.47 4.53 -17.43 -0.08 -0.55 16 21 N -0.90 -25.14 11.99 55.49 0.67 -24.48 16 22 Si 1.03 24.72 30.05 -169.99 -5.11 19.61 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.30 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.15 3.31 4.74 -4.93 -0.02 3.28 16 27 N -0.42 -6.92 9.23 -9.35 -0.09 -7.01 16 28 C 0.03 0.38 10.22 -17.37 -0.18 0.21 16 29 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 30 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.14 1.14 7.95 -52.48 -0.42 0.72 16 34 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 35 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.40 6.48 8.44 -40.82 -0.34 6.13 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.35 6.58 -51.93 -0.34 1.01 16 39 H 0.06 1.08 6.28 -51.93 -0.33 0.75 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.55 4.65 -51.93 -0.24 1.31 16 43 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 44 H 0.09 2.40 5.61 -51.92 -0.29 2.10 16 45 H 0.27 7.35 4.95 -40.82 -0.20 7.15 16 46 H 0.04 1.03 7.80 -51.93 -0.41 0.62 16 47 H 0.03 0.71 6.89 -51.93 -0.36 0.35 16 48 H 0.16 1.79 6.32 -52.49 -0.33 1.46 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.12 375.84 -8.63 -41.75 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.03 Total: 7.65 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.88 Total: -1.32 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.15 Total: -58.40 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.12 Total: -14.95 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.11 Total: 19.61 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.12 -8.63 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034366503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.702 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds