Wall clock time and date at job start Tue Mar 31 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 116.99547 * 2 1 4 4 C 1.39143 * 120.47181 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.37323 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.22375 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.55679 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47159 * 125.00075 * 7 6 5 9 9 O 1.21282 * 120.00078 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99960 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00034 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.35805 * 324.71975 * 11 10 8 13 13 C 1.54845 * 109.35943 * 204.99615 * 11 10 8 14 14 C 1.50121 * 110.81445 * 201.06155 * 13 11 10 15 15 C 1.52527 * 105.41433 * 97.68551 * 14 13 11 16 16 C 1.46238 * 114.27438 * 270.58765 * 15 14 13 17 17 N 1.50164 * 107.53002 * 58.41187 * 16 15 14 18 18 C 1.36940 * 120.53765 * 109.56644 * 17 16 15 19 19 H 1.08004 * 120.00183 * 172.84646 * 18 17 16 20 20 C 1.38815 * 119.99854 * 352.84170 * 18 17 16 21 21 N 1.31620 * 119.99900 * 319.29777 * 20 18 17 22 22 Si 1.86797 * 119.99615 * 139.29920 * 20 18 17 23 23 H 1.48504 * 109.46872 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47197 * 299.99684 * 22 20 18 25 25 H 1.48504 * 109.47341 * 60.00223 * 22 20 18 26 26 C 1.43430 * 118.92544 * 289.83407 * 17 16 15 27 27 N 1.31840 * 120.88392 * 0.25712 * 6 5 4 28 28 C 1.31845 * 121.78252 * 359.47042 * 27 6 5 29 29 H 1.08997 * 109.47588 * 299.99594 * 1 2 3 30 30 H 1.09002 * 109.47395 * 60.00073 * 1 2 3 31 31 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.81438 * 359.95410 * 4 3 2 33 33 H 1.08009 * 120.38728 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46901 * 4.99477 * 7 6 5 35 35 H 1.09005 * 109.46747 * 245.00214 * 7 6 5 36 36 H 0.97001 * 120.00173 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.20678 * 80.72016 * 13 11 10 38 38 H 1.09000 * 109.17081 * 321.38192 * 13 11 10 39 39 H 1.08998 * 110.25305 * 338.70962 * 14 13 11 40 40 H 1.09002 * 110.37182 * 216.71684 * 14 13 11 41 41 H 1.09004 * 108.51900 * 149.35009 * 15 14 13 42 42 H 1.08994 * 108.39931 * 31.74574 * 15 14 13 43 43 H 1.08996 * 109.85131 * 298.89823 * 16 15 14 44 44 H 1.09009 * 109.89776 * 177.94655 * 16 15 14 45 45 H 0.97001 * 119.99999 * 353.66198 * 21 20 18 46 46 H 1.09001 * 108.15893 * 213.03183 * 26 17 16 47 47 H 1.09000 * 108.16547 * 329.60142 * 26 17 16 48 48 H 1.07996 * 119.66243 * 180.26943 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4348 1.2954 -0.0005 5 6 4.0180 2.5520 -0.0011 6 6 3.2077 3.6723 -0.0005 7 6 3.8341 5.0429 -0.0005 8 6 3.3013 5.8388 -1.1639 9 8 2.4928 5.3418 -1.9191 10 7 3.7239 7.1025 -1.3658 11 6 3.2055 7.8764 -2.4965 12 1 3.0442 7.2120 -3.3455 13 6 4.2333 8.9669 -2.8864 14 6 3.5714 10.0733 -3.6555 15 6 3.2920 11.1683 -2.6311 16 6 1.9945 11.0529 -1.9665 17 7 1.9512 9.7139 -1.2881 18 6 1.9980 9.6240 0.0775 19 1 1.8505 8.6697 0.5612 20 6 2.2351 10.7594 0.8401 21 7 3.1298 11.6411 0.4471 22 14 1.2845 11.0357 2.4242 23 1 1.7206 12.3113 3.0470 24 1 -0.1684 11.1019 2.1245 25 1 1.5462 9.9133 3.3608 26 6 1.8660 8.5305 -2.0939 27 7 1.8943 3.5575 0.0056 28 6 1.3001 2.3805 0.0010 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0433 0.4031 -0.0002 33 1 5.0931 2.6553 -0.0019 34 1 4.9162 4.9477 -0.0904 35 1 3.5905 5.5536 0.9312 36 1 4.3709 7.4998 -0.7621 37 1 5.0144 8.5201 -3.5014 38 1 4.6806 9.3773 -1.9810 39 1 2.6383 9.7212 -4.0954 40 1 4.2376 10.4458 -4.4336 41 1 3.3383 12.1338 -3.1350 42 1 4.0738 11.1372 -1.8723 43 1 1.1940 11.1206 -2.7031 44 1 1.8846 11.8462 -1.2269 45 1 3.6880 11.4550 -0.3241 46 1 1.2822 7.7892 -1.5482 47 1 1.3227 8.7786 -3.0057 48 1 0.2215 2.3264 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034366503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:40 Heat of formation + Delta-G solvation = -24.819328 kcal Electronic energy + Delta-G solvation = -29315.440370 eV Core-core repulsion = 25371.054963 eV Total energy + Delta-G solvation = -3944.385408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.76229 -40.83618 -39.62847 -38.90979 -36.01684 -34.85471 -33.55859 -33.40037 -32.89401 -31.55895 -29.15009 -28.19518 -27.61786 -25.72573 -24.72037 -24.31790 -23.28758 -22.14231 -21.09927 -20.80378 -19.14731 -18.99181 -18.30505 -17.78152 -17.44682 -16.83208 -16.81267 -16.52338 -16.24596 -15.99372 -15.55005 -15.38746 -15.17497 -15.05394 -14.84070 -14.32010 -14.18020 -14.03007 -13.85938 -13.74107 -13.45792 -13.14706 -13.01148 -12.77779 -12.74712 -12.49127 -12.40537 -12.33691 -12.11872 -11.91980 -11.72149 -11.53067 -11.26412 -11.16248 -10.83094 -10.65191 -10.33389 -10.29990 -9.91510 -9.36751 -8.82889 -8.24751 -5.04453 0.09671 0.31156 1.59747 1.65568 1.80138 1.85098 2.21084 2.35619 2.68918 2.84194 3.15956 3.32577 3.48187 3.64123 3.71661 3.81738 3.93014 4.03539 4.07326 4.26010 4.32436 4.32812 4.37646 4.41088 4.46702 4.49874 4.50809 4.57791 4.66073 4.70173 4.71888 4.76437 4.94690 4.95570 5.08778 5.09270 5.15419 5.18174 5.32932 5.41179 5.50035 5.51107 5.63266 5.73743 5.95259 6.18720 6.52208 6.72556 7.06229 7.12741 7.42615 7.89873 8.34803 9.08161 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003067 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.786573 B = 9126.981982 C =10178.121019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.067 3.933 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.086 3.914 7 C -0.084 4.084 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.705 5.705 11 C 0.125 3.875 12 H 0.072 0.928 13 C -0.101 4.101 14 C -0.103 4.103 15 C -0.127 4.127 16 C 0.132 3.868 17 N -0.598 5.598 18 C -0.348 4.348 19 H 0.043 0.957 20 C -0.055 4.055 21 N -0.924 5.924 22 Si 1.077 2.923 23 H -0.292 1.292 24 H -0.297 1.297 25 H -0.284 1.284 26 C 0.160 3.840 27 N -0.465 5.465 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.128 0.872 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.034 0.966 44 H 0.062 0.938 45 H 0.271 0.729 46 H 0.005 0.995 47 H 0.041 0.959 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -18.349 -3.460 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.019 3.981 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.053 4.053 7 C -0.124 4.124 8 C 0.300 3.700 9 O -0.458 6.458 10 N -0.355 5.355 11 C 0.017 3.983 12 H 0.090 0.910 13 C -0.139 4.139 14 C -0.141 4.141 15 C -0.166 4.166 16 C 0.008 3.992 17 N -0.320 5.320 18 C -0.477 4.477 19 H 0.061 0.939 20 C -0.254 4.254 21 N -0.567 5.567 22 Si 0.906 3.094 23 H -0.218 1.218 24 H -0.224 1.224 25 H -0.211 1.211 26 C 0.030 3.970 27 N -0.174 5.174 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.188 0.812 33 H 0.197 0.803 34 H 0.166 0.834 35 H 0.127 0.873 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.059 0.941 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.918 -17.084 -2.725 17.544 hybrid contribution 0.295 -1.292 -0.717 1.507 sum 3.212 -18.376 -3.443 18.969 Atomic orbital electron populations 1.23383 0.76375 1.06021 1.02107 1.86037 1.23414 1.25420 1.88487 1.20232 0.94033 0.85672 0.98136 1.21256 0.91432 0.99711 1.01470 1.22147 1.02796 0.90596 0.98067 1.20786 0.89117 0.95552 0.99822 1.20617 1.03033 0.90974 0.97736 1.20799 0.81027 0.81902 0.86312 1.90650 1.34936 1.71411 1.48806 1.45958 1.45793 1.13157 1.30600 1.22438 0.95704 0.92014 0.88123 0.90962 1.21573 0.97088 0.95447 0.99796 1.20938 1.00966 0.95131 0.97076 1.20922 0.99044 0.98764 0.97840 1.20541 0.95561 0.88051 0.95055 1.44373 1.85446 1.00274 1.01924 1.19839 1.48562 0.96399 0.82912 0.93867 1.26187 0.99111 0.94998 1.05072 1.70908 1.16887 1.41685 1.27252 0.83340 0.75960 0.75696 0.74426 1.21824 1.22447 1.21092 1.20557 0.94620 0.88173 0.93606 1.67245 1.13238 1.27773 1.09160 1.23057 1.01170 0.87129 1.03999 0.91826 0.92309 0.85357 0.81223 0.80274 0.83424 0.87280 0.76110 0.90855 0.92913 0.91805 0.89449 0.92610 0.93312 0.94819 0.92000 0.91599 0.97677 0.94051 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 113.37 1.11 1.32 16 2 O -0.32 -6.53 10.51 -92.56 -0.97 -7.51 16 3 C 0.07 1.59 6.71 22.60 0.15 1.74 16 4 C -0.11 -2.27 10.13 22.56 0.23 -2.04 16 5 C -0.12 -2.39 9.70 22.35 0.22 -2.17 16 6 C 0.09 2.45 5.76 42.56 0.24 2.70 16 7 C -0.08 -2.20 6.10 29.10 0.18 -2.03 16 8 C 0.51 18.15 7.57 87.66 0.66 18.81 16 9 O -0.58 -25.12 15.01 -3.04 -0.05 -25.16 16 10 N -0.71 -24.34 5.08 -437.29 -2.22 -26.56 16 11 C 0.13 4.56 2.91 46.10 0.13 4.69 16 12 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 13 C -0.10 -3.22 5.23 30.30 0.16 -3.06 16 14 C -0.10 -3.19 5.76 29.51 0.17 -3.02 16 15 C -0.13 -4.78 4.96 28.36 0.14 -4.64 16 16 C 0.13 5.91 5.22 83.58 0.44 6.35 16 17 N -0.60 -28.88 2.62 -708.84 -1.86 -30.73 16 18 C -0.35 -18.89 9.46 84.03 0.80 -18.10 16 19 H 0.04 2.49 8.05 -2.91 -0.02 2.46 16 20 C -0.05 -2.98 4.53 84.86 0.38 -2.60 16 21 N -0.92 -52.07 11.99 21.65 0.26 -51.81 16 22 Si 1.08 50.84 30.05 68.60 2.06 52.90 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 C 0.16 6.99 4.74 87.43 0.41 7.41 16 27 N -0.46 -15.89 9.23 -183.49 -1.69 -17.59 16 28 C 0.00 0.14 10.22 84.80 0.87 1.00 16 29 H 0.06 0.79 7.68 -2.39 -0.02 0.77 16 30 H 0.06 0.79 7.68 -2.39 -0.02 0.78 16 31 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.18 2.13 7.95 -2.91 -0.02 2.10 16 34 H 0.15 2.46 7.87 -2.39 -0.02 2.44 16 35 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 36 H 0.40 13.00 8.44 -92.71 -0.78 12.21 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.92 6.58 -2.39 -0.02 1.90 16 39 H 0.06 2.00 6.28 -2.39 -0.02 1.98 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.05 2.09 4.65 -2.39 -0.01 2.08 16 43 H 0.03 1.41 8.13 -2.39 -0.02 1.40 16 44 H 0.06 3.20 5.61 -2.38 -0.01 3.19 16 45 H 0.27 14.87 4.95 -92.71 -0.46 14.41 16 46 H 0.00 0.25 7.80 -2.39 -0.02 0.23 16 47 H 0.04 1.72 6.89 -2.39 -0.02 1.70 16 48 H 0.16 3.95 6.32 -2.91 -0.02 3.93 16 Total: -1.00 -74.52 375.84 2.34 -72.18 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.51 Total: 27.92 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.30 Total: 6.36 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.51 Total: -126.69 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.02 Total: -32.67 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.06 Total: 52.90 kcal Total: -74.52 2.34 -72.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034366503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.364 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds