Wall clock time and date at job start Tue Mar 31 2020 17:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35910 * 116.99731 * 2 1 4 4 C 1.39139 * 120.47858 * 0.19887 * 3 2 1 5 5 C 1.38535 * 118.37982 * 180.26576 * 4 3 2 6 6 C 1.38260 * 119.21700 * 359.76006 * 5 4 3 7 7 N 1.31845 * 120.88817 * 0.02562 * 6 5 4 8 8 C 1.31846 * 121.78029 * 359.97233 * 7 6 5 9 9 C 1.50699 * 119.65642 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47159 * 90.00617 * 9 8 7 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48504 * 109.46872 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47197 * 299.99684 * 24 22 20 27 27 H 1.48504 * 109.47341 * 60.00223 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.08999 * 109.47271 * 300.00289 * 1 2 3 30 30 H 1.08999 * 109.47089 * 60.00610 * 1 2 3 31 31 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.81009 * 0.02888 * 4 3 2 33 33 H 1.08000 * 120.39313 * 179.77173 * 5 4 3 34 34 H 1.08000 * 119.55241 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46901 * 330.00018 * 9 8 7 36 36 H 1.09005 * 109.46747 * 210.00756 * 9 8 7 37 37 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 39 39 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 40 40 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 41 41 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 42 42 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 43 43 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 44 44 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 45 45 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 46 46 H 0.97001 * 119.99999 * 353.66198 * 23 22 20 47 47 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 48 48 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3842 0.0042 5 6 1.9715 3.5947 -0.0017 6 6 3.3541 3.5976 -0.0063 7 7 4.0334 2.4676 -0.0057 8 6 3.4305 1.2951 -0.0002 9 6 4.2542 0.0331 -0.0004 10 6 4.5346 -0.3840 1.4203 11 8 4.1079 0.2785 2.3422 12 7 5.2603 -1.4927 1.6663 13 6 5.5323 -1.8985 3.0474 14 1 5.6647 -1.0105 3.6656 15 6 6.8257 -2.7490 3.0872 16 6 6.8718 -3.5921 4.3285 17 6 6.3722 -4.9687 3.9022 18 6 4.9247 -5.1442 4.0141 19 7 4.2744 -4.0927 3.1617 20 6 3.6340 -4.4361 2.0010 21 1 3.0714 -3.6935 1.4546 22 6 3.7081 -5.7385 1.5266 23 7 4.8456 -6.3979 1.5888 24 14 2.1935 -6.5553 0.7998 25 1 2.5340 -7.9349 0.3686 26 1 1.1195 -6.6071 1.8240 27 1 1.7232 -5.7730 -0.3716 28 6 4.3399 -2.7223 3.5800 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2183 2.3518 0.0079 33 1 1.4232 4.5251 -0.0024 34 1 3.8848 4.5382 -0.0113 35 1 5.1959 0.2140 -0.5187 36 1 3.7054 -0.7589 -0.5101 37 1 5.6018 -2.0224 0.9290 38 1 7.6911 -2.0865 3.0714 39 1 6.8546 -3.3977 2.2118 40 1 6.2177 -3.1735 5.0934 41 1 7.8932 -3.6607 4.7028 42 1 6.8611 -5.7213 4.5210 43 1 6.6619 -5.1338 2.8646 44 1 4.6162 -5.0218 5.0523 45 1 4.6425 -6.1353 3.6588 46 1 5.6529 -5.9459 1.8801 47 1 3.4223 -2.2263 3.2635 48 1 4.3729 -2.7007 4.6693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034369305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:45 Heat of formation + Delta-G solvation = -4.609784 kcal Electronic energy + Delta-G solvation = -30072.070796 eV Core-core repulsion = 26128.561740 eV Total energy + Delta-G solvation = -3943.509056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.82666 -39.30739 -38.15771 -37.79228 -34.36981 -33.22390 -33.11104 -31.51614 -31.05525 -30.05003 -28.11909 -27.45956 -25.91478 -24.18920 -23.01091 -22.92147 -22.29162 -20.53349 -19.70476 -19.19479 -18.13451 -17.18789 -17.05651 -16.74405 -16.35130 -15.75601 -15.48887 -15.07465 -14.59937 -14.49947 -14.31248 -13.99184 -13.73652 -13.61369 -13.51558 -13.26529 -12.92641 -12.66128 -12.41990 -12.25109 -12.09226 -11.87778 -11.64160 -11.50527 -11.43677 -10.99573 -10.81035 -10.55661 -10.33502 -10.11813 -10.00843 -9.84685 -9.78136 -9.69956 -9.61455 -9.43364 -9.27892 -8.59734 -8.33842 -8.09345 -6.91367 -6.13306 -2.97729 1.05425 1.23971 3.14534 3.18992 3.51837 3.54965 3.59398 3.75319 3.96201 4.31129 4.55188 4.63689 4.64176 4.89288 5.03178 5.07540 5.16970 5.18685 5.23919 5.28499 5.35484 5.43104 5.45767 5.46837 5.54627 5.75981 5.84519 5.94205 5.99686 6.03093 6.05864 6.08471 6.29517 6.38315 6.39474 6.44753 6.64805 6.73588 6.75326 6.90565 6.96299 7.16021 7.20424 7.26825 7.28497 7.97199 8.03239 8.13131 8.57037 8.79447 9.12169 9.90028 10.34903 11.17232 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.004046 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.227842 B = 6919.175520 C = 8538.289517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.096 3.904 4 C -0.168 4.168 5 C -0.138 4.138 6 C 0.059 3.941 7 N -0.440 5.440 8 C 0.133 3.867 9 C -0.089 4.089 10 C 0.525 3.475 11 O -0.551 6.551 12 N -0.704 5.704 13 C 0.116 3.884 14 H 0.073 0.927 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.135 4.135 18 C 0.129 3.871 19 N -0.587 5.587 20 C -0.348 4.348 21 H 0.065 0.935 22 C -0.017 4.017 23 N -0.904 5.904 24 Si 1.034 2.966 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.295 1.295 28 C 0.154 3.846 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.399 0.601 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.023 0.977 45 H 0.094 0.906 46 H 0.273 0.727 47 H 0.041 0.959 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 14.615 -3.189 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.211 6.211 3 C 0.047 3.953 4 C -0.194 4.194 5 C -0.157 4.157 6 C -0.098 4.098 7 N -0.149 5.149 8 C -0.007 4.007 9 C -0.129 4.129 10 C 0.310 3.690 11 O -0.429 6.429 12 N -0.353 5.353 13 C 0.009 3.991 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.174 4.174 18 C 0.005 3.995 19 N -0.308 5.308 20 C -0.476 4.476 21 H 0.083 0.917 22 C -0.219 4.219 23 N -0.546 5.546 24 Si 0.864 3.136 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.223 1.223 28 C 0.024 3.976 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.233 0.767 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.041 0.959 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.918 13.455 -3.164 14.127 hybrid contribution -0.490 1.466 0.149 1.553 sum -3.408 14.921 -3.015 15.600 Atomic orbital electron populations 1.23125 0.78160 1.04653 1.00945 1.86193 1.21515 1.25544 1.87869 1.19884 0.93162 0.85347 0.96869 1.21644 1.00660 0.92146 1.04961 1.21923 0.95751 0.98064 1.00000 1.22544 0.91412 0.96240 0.99625 1.67441 1.40048 0.97506 1.09955 1.19964 0.87826 0.93326 0.99587 1.20462 1.01386 0.94444 0.96638 1.20054 0.78153 0.80560 0.90262 1.90650 1.51686 1.54397 1.46204 1.45918 1.53992 1.26032 1.09394 1.22716 0.97187 0.97010 0.82226 0.90922 1.21663 0.95599 0.98225 0.99471 1.20939 0.99855 0.96782 0.97237 1.21095 0.99261 0.95187 1.01866 1.20590 0.90410 0.95776 0.92701 1.44370 1.63354 0.99550 1.23555 1.19905 1.27073 0.97535 1.03063 0.91746 1.25348 1.01622 0.95079 0.99825 1.70867 0.98668 1.42308 1.42746 0.83976 0.77349 0.76519 0.75745 1.21449 1.22468 1.22256 1.20602 0.95219 0.85829 0.95955 0.92610 0.92783 0.87611 0.84424 0.84730 0.82658 0.87452 0.86845 0.76657 0.93704 0.90980 0.91828 0.92697 0.94279 0.91015 0.95930 0.88759 0.91410 0.94092 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.83 101.05 0.99 1.27 16 2 O -0.30 -4.51 9.54 -19.46 -0.19 -4.69 16 3 C 0.10 1.42 6.67 -39.07 -0.26 1.16 16 4 C -0.17 -1.99 9.14 -39.14 -0.36 -2.35 16 5 C -0.14 -1.46 10.11 -39.46 -0.40 -1.86 16 6 C 0.06 0.71 11.18 -17.54 -0.20 0.52 16 7 N -0.44 -6.77 10.27 -9.35 -0.10 -6.87 16 8 C 0.13 2.13 5.29 -82.41 -0.44 1.69 16 9 C -0.09 -1.38 5.78 -29.04 -0.17 -1.54 16 10 C 0.52 9.79 7.63 -10.99 -0.08 9.70 16 11 O -0.55 -12.11 15.70 5.56 0.09 -12.02 16 12 N -0.70 -12.75 5.08 -52.15 -0.26 -13.02 16 13 C 0.12 2.20 2.91 -66.22 -0.19 2.00 16 14 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.11 -1.93 5.23 -27.19 -0.14 -2.07 16 16 C -0.11 -1.86 5.76 -28.41 -0.16 -2.02 16 17 C -0.13 -2.63 4.96 -30.19 -0.15 -2.78 16 18 C 0.13 2.89 5.22 -5.21 -0.03 2.86 16 19 N -0.59 -13.90 2.62 -175.40 -0.46 -14.35 16 20 C -0.35 -9.14 9.46 -15.06 -0.14 -9.28 16 21 H 0.06 1.77 8.05 -52.48 -0.42 1.35 16 22 C -0.02 -0.45 4.53 -17.43 -0.08 -0.53 16 23 N -0.90 -25.12 11.99 55.49 0.67 -24.45 16 24 Si 1.03 24.43 30.05 -169.99 -5.11 19.32 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.30 -6.75 7.11 56.52 0.40 -6.34 16 28 C 0.15 3.32 4.74 -4.93 -0.02 3.30 16 29 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16 30 H 0.05 0.44 7.71 -51.93 -0.40 0.04 16 31 H 0.11 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.14 1.24 6.45 -52.48 -0.34 0.90 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.11 1.69 7.51 -51.93 -0.39 1.30 16 37 H 0.40 6.84 8.44 -40.82 -0.34 6.49 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.38 6.58 -51.93 -0.34 1.04 16 40 H 0.06 1.08 6.28 -51.93 -0.33 0.76 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.56 4.65 -51.93 -0.24 1.32 16 44 H 0.02 0.48 8.13 -51.93 -0.42 0.05 16 45 H 0.09 2.39 5.61 -51.92 -0.29 2.10 16 46 H 0.27 7.37 4.95 -40.82 -0.20 7.17 16 47 H 0.04 0.98 7.80 -51.93 -0.41 0.58 16 48 H 0.03 0.72 6.89 -51.93 -0.36 0.36 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.64 376.15 -8.55 -41.19 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.03 Total: 9.14 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.83 Total: 0.08 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.16 Total: -58.69 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.10 Total: -16.71 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.11 Total: 19.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.64 -8.55 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034369305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.582 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds