Wall clock time and date at job start Tue Mar 31 2020 17:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35910 * 116.99731 * 2 1 4 4 C 1.39139 * 120.47858 * 0.19887 * 3 2 1 5 5 C 1.38535 * 118.37982 * 180.26576 * 4 3 2 6 6 C 1.38260 * 119.21700 * 359.76006 * 5 4 3 7 7 N 1.31845 * 120.88817 * 0.02562 * 6 5 4 8 8 C 1.31846 * 121.78029 * 359.97233 * 7 6 5 9 9 C 1.50699 * 119.65642 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47159 * 90.00617 * 9 8 7 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48504 * 109.46872 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47197 * 299.99684 * 24 22 20 27 27 H 1.48504 * 109.47341 * 60.00223 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.08999 * 109.47271 * 300.00289 * 1 2 3 30 30 H 1.08999 * 109.47089 * 60.00610 * 1 2 3 31 31 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.81009 * 0.02888 * 4 3 2 33 33 H 1.08000 * 120.39313 * 179.77173 * 5 4 3 34 34 H 1.08000 * 119.55241 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46901 * 330.00018 * 9 8 7 36 36 H 1.09005 * 109.46747 * 210.00756 * 9 8 7 37 37 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 39 39 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 40 40 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 41 41 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 42 42 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 43 43 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 44 44 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 45 45 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 46 46 H 0.97001 * 119.99999 * 353.66198 * 23 22 20 47 47 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 48 48 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3842 0.0042 5 6 1.9715 3.5947 -0.0017 6 6 3.3541 3.5976 -0.0063 7 7 4.0334 2.4676 -0.0057 8 6 3.4305 1.2951 -0.0002 9 6 4.2542 0.0331 -0.0004 10 6 4.5346 -0.3840 1.4203 11 8 4.1079 0.2785 2.3422 12 7 5.2603 -1.4927 1.6663 13 6 5.5323 -1.8985 3.0474 14 1 5.6647 -1.0105 3.6656 15 6 6.8257 -2.7490 3.0872 16 6 6.8718 -3.5921 4.3285 17 6 6.3722 -4.9687 3.9022 18 6 4.9247 -5.1442 4.0141 19 7 4.2744 -4.0927 3.1617 20 6 3.6340 -4.4361 2.0010 21 1 3.0714 -3.6935 1.4546 22 6 3.7081 -5.7385 1.5266 23 7 4.8456 -6.3979 1.5888 24 14 2.1935 -6.5553 0.7998 25 1 2.5340 -7.9349 0.3686 26 1 1.1195 -6.6071 1.8240 27 1 1.7232 -5.7730 -0.3716 28 6 4.3399 -2.7223 3.5800 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2183 2.3518 0.0079 33 1 1.4232 4.5251 -0.0024 34 1 3.8848 4.5382 -0.0113 35 1 5.1959 0.2140 -0.5187 36 1 3.7054 -0.7589 -0.5101 37 1 5.6018 -2.0224 0.9290 38 1 7.6911 -2.0865 3.0714 39 1 6.8546 -3.3977 2.2118 40 1 6.2177 -3.1735 5.0934 41 1 7.8932 -3.6607 4.7028 42 1 6.8611 -5.7213 4.5210 43 1 6.6619 -5.1338 2.8646 44 1 4.6162 -5.0218 5.0523 45 1 4.6425 -6.1353 3.6588 46 1 5.6529 -5.9459 1.8801 47 1 3.4223 -2.2263 3.2635 48 1 4.3729 -2.7007 4.6693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034369305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:44 Heat of formation + Delta-G solvation = -25.953011 kcal Electronic energy + Delta-G solvation = -30072.996308 eV Core-core repulsion = 26128.561740 eV Total energy + Delta-G solvation = -3944.434568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85659 -40.80540 -39.47912 -39.07219 -36.06216 -34.87923 -34.18957 -32.98848 -32.47666 -31.60894 -29.27609 -28.34584 -27.70476 -25.75450 -24.68941 -23.85696 -23.55561 -22.16299 -21.17525 -20.82849 -19.09311 -18.98405 -18.18578 -18.13129 -17.54793 -16.91228 -16.77156 -16.55494 -16.23196 -16.01807 -15.54232 -15.39107 -15.15990 -15.01597 -14.83839 -14.35885 -14.29993 -14.08907 -13.92999 -13.75567 -13.47902 -13.20676 -12.96276 -12.74466 -12.51860 -12.42138 -12.38506 -12.32471 -12.13427 -11.91784 -11.72963 -11.53291 -11.27449 -11.17128 -10.97580 -10.61847 -10.58374 -10.33153 -9.95127 -9.34542 -8.83287 -8.23473 -5.03460 0.09086 0.29146 1.60407 1.65723 1.71443 1.85582 2.23019 2.30112 2.70337 2.84932 3.17430 3.28398 3.47953 3.62341 3.79484 3.80820 3.93954 4.01770 4.06462 4.21561 4.26621 4.29724 4.31527 4.39446 4.44711 4.46063 4.46365 4.49690 4.65120 4.69069 4.73090 4.79722 4.93594 5.04474 5.07463 5.09590 5.14255 5.16737 5.31285 5.40085 5.49976 5.50915 5.63072 5.68133 5.96498 6.23278 6.52758 6.64176 6.99241 7.13413 7.31687 7.90840 8.35471 9.09427 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.004046 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.227842 B = 6919.175520 C = 8538.289517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.074 3.926 4 C -0.168 4.168 5 C -0.125 4.125 6 C 0.048 3.952 7 N -0.467 5.467 8 C 0.097 3.903 9 C -0.081 4.081 10 C 0.522 3.478 11 O -0.586 6.586 12 N -0.702 5.702 13 C 0.123 3.877 14 H 0.072 0.928 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.127 4.127 18 C 0.132 3.868 19 N -0.597 5.597 20 C -0.346 4.346 21 H 0.045 0.955 22 C -0.055 4.055 23 N -0.926 5.926 24 Si 1.078 2.922 25 H -0.294 1.294 26 H -0.294 1.294 27 H -0.283 1.283 28 C 0.160 3.840 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.167 0.833 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.404 0.596 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.271 0.729 47 H 0.007 0.993 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 16.422 -3.144 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.026 3.974 4 C -0.194 4.194 5 C -0.144 4.144 6 C -0.110 4.110 7 N -0.177 5.177 8 C -0.042 4.042 9 C -0.121 4.121 10 C 0.309 3.691 11 O -0.467 6.467 12 N -0.351 5.351 13 C 0.015 3.985 14 H 0.090 0.910 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.166 4.166 18 C 0.008 3.992 19 N -0.320 5.320 20 C -0.475 4.475 21 H 0.063 0.937 22 C -0.254 4.254 23 N -0.570 5.570 24 Si 0.906 3.094 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.209 1.209 28 C 0.031 3.969 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.184 0.816 33 H 0.195 0.805 34 H 0.203 0.797 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.239 0.761 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.026 0.974 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.129 15.261 -3.124 15.888 hybrid contribution -0.496 1.003 0.183 1.134 sum -3.625 16.264 -2.941 16.921 Atomic orbital electron populations 1.23366 0.76290 1.05423 1.02561 1.86135 1.23689 1.26386 1.88223 1.20094 0.93254 0.86261 0.97807 1.22067 1.02123 0.91539 1.03707 1.22407 0.95351 0.99291 0.97346 1.23198 0.92678 0.96383 0.98698 1.67394 1.41209 0.98176 1.10924 1.19989 0.88627 0.93482 1.02053 1.20387 1.02411 0.94948 0.94345 1.20620 0.77125 0.80005 0.91314 1.90611 1.53007 1.55505 1.47596 1.45937 1.53846 1.26022 1.09327 1.22521 0.96773 0.96622 0.82568 0.90956 1.21583 0.95390 0.98038 0.98989 1.20929 1.01612 0.94556 0.96880 1.20931 0.97285 0.97617 1.00815 1.20547 0.92241 0.93745 0.92655 1.44408 1.63999 1.00637 1.22911 1.19843 1.26816 0.97252 1.03609 0.93722 1.26207 1.02830 0.95678 1.00662 1.70909 0.99048 1.42653 1.44376 0.83344 0.74909 0.75491 0.75689 1.22052 1.22174 1.20929 1.20552 0.94980 0.84932 0.96454 0.91862 0.90164 0.87420 0.81576 0.80464 0.79702 0.85685 0.86973 0.76148 0.91082 0.92953 0.91635 0.89485 0.92555 0.93419 0.94640 0.91922 0.91668 0.97444 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.83 113.37 1.11 1.48 16 2 O -0.33 -10.16 9.54 -92.53 -0.88 -11.05 16 3 C 0.07 2.18 6.67 22.60 0.15 2.33 16 4 C -0.17 -3.64 9.14 22.56 0.21 -3.44 16 5 C -0.12 -2.27 10.11 22.35 0.23 -2.04 16 6 C 0.05 1.07 11.18 84.70 0.95 2.02 16 7 N -0.47 -14.17 10.27 -183.50 -1.88 -16.05 16 8 C 0.10 3.14 5.29 42.67 0.23 3.37 16 9 C -0.08 -2.58 5.78 29.10 0.17 -2.41 16 10 C 0.52 20.07 7.63 87.66 0.67 20.74 16 11 O -0.59 -26.52 15.70 -3.04 -0.05 -26.56 16 12 N -0.70 -25.98 5.08 -437.29 -2.22 -28.20 16 13 C 0.12 4.63 2.91 46.10 0.13 4.77 16 14 H 0.07 2.76 7.58 -2.39 -0.02 2.75 16 15 C -0.10 -3.39 5.23 30.30 0.16 -3.23 16 16 C -0.10 -3.21 5.76 29.51 0.17 -3.04 16 17 C -0.13 -4.86 4.96 28.36 0.14 -4.72 16 18 C 0.13 5.90 5.22 83.58 0.44 6.34 16 19 N -0.60 -28.75 2.62 -708.84 -1.86 -30.61 16 20 C -0.35 -18.65 9.46 84.03 0.80 -17.86 16 21 H 0.04 2.55 8.05 -2.91 -0.02 2.52 16 22 C -0.05 -2.99 4.53 84.86 0.38 -2.60 16 23 N -0.93 -52.38 11.99 21.65 0.26 -52.12 16 24 Si 1.08 50.24 30.05 68.60 2.06 52.30 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 C 0.16 7.01 4.74 87.43 0.41 7.43 16 29 H 0.06 1.15 7.69 -2.39 -0.02 1.13 16 30 H 0.08 1.16 7.71 -2.39 -0.02 1.14 16 31 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.17 2.48 6.45 -2.91 -0.02 2.46 16 33 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.11 3.53 7.51 -2.38 -0.02 3.51 16 37 H 0.40 14.18 8.44 -92.71 -0.78 13.40 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.98 6.58 -2.39 -0.02 1.96 16 40 H 0.07 2.07 6.28 -2.39 -0.02 2.05 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.05 2.08 4.65 -2.39 -0.01 2.07 16 44 H 0.04 1.48 8.13 -2.39 -0.02 1.46 16 45 H 0.06 3.23 5.61 -2.38 -0.01 3.22 16 46 H 0.27 14.94 4.95 -92.71 -0.46 14.49 16 47 H 0.01 0.36 7.80 -2.39 -0.02 0.34 16 48 H 0.04 1.83 6.89 -2.39 -0.02 1.81 16 Total: -1.00 -72.98 376.15 2.28 -70.70 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.51 Total: 32.45 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.34 Total: 9.13 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -5.70 Total: -126.98 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.93 Total: -37.61 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.06 Total: 52.30 kcal Total: -72.98 2.28 -70.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034369305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.750 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds