Wall clock time and date at job start Tue Mar 31 2020 17:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35913 * 117.00273 * 2 1 4 4 C 1.39139 * 120.47008 * 359.97438 * 3 2 1 5 5 C 1.38534 * 118.37085 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.22485 * 0.02562 * 5 4 3 7 7 N 1.31850 * 120.88357 * 359.73640 * 6 5 4 8 8 C 1.31839 * 121.77908 * 0.52568 * 7 6 5 9 9 C 1.50701 * 119.65555 * 179.75113 * 8 7 6 10 10 C 1.50701 * 109.47087 * 269.72910 * 9 8 7 11 11 O 1.21279 * 119.99983 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99992 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00441 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.18411 * 34.55847 * 13 12 10 15 15 C 1.47089 * 109.33307 * 154.12845 * 13 12 10 16 16 C 1.52565 * 114.32525 * 183.06026 * 15 13 12 17 17 C 1.50880 * 109.36282 * 274.98808 * 16 15 13 18 18 C 1.53954 * 110.09370 * 91.88878 * 17 16 15 19 19 N 1.47583 * 112.11962 * 319.44928 * 18 17 16 20 20 C 1.36936 * 118.62322 * 137.87324 * 19 18 17 21 21 H 1.07998 * 119.99825 * 206.49894 * 20 19 18 22 22 C 1.38816 * 120.00147 * 26.50043 * 20 19 18 23 23 N 1.31620 * 120.00010 * 15.71271 * 22 20 19 24 24 Si 1.86801 * 120.00173 * 195.70570 * 22 20 19 25 25 H 1.48503 * 109.46821 * 60.00367 * 24 22 20 26 26 H 1.48503 * 109.47046 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47266 * 300.00250 * 24 22 20 28 28 C 1.44576 * 122.73176 * 317.82464 * 19 18 17 29 29 H 1.08993 * 109.46916 * 59.99578 * 1 2 3 30 30 H 1.08996 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46442 * 299.99683 * 1 2 3 32 32 H 1.07998 * 120.81539 * 0.04676 * 4 3 2 33 33 H 1.08004 * 120.38753 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.55759 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.46988 * 149.73043 * 9 8 7 36 36 H 1.09000 * 109.47068 * 29.72860 * 9 8 7 37 37 H 0.97006 * 119.99442 * 359.97438 * 12 10 9 38 38 H 1.08996 * 108.51420 * 304.31820 * 15 13 12 39 39 H 1.09009 * 108.50731 * 61.81200 * 15 13 12 40 40 H 1.09002 * 109.49257 * 34.95830 * 16 15 13 41 41 H 1.09003 * 109.49057 * 155.00675 * 16 15 13 42 42 H 1.09000 * 109.37192 * 212.07486 * 17 16 15 43 43 H 1.08995 * 109.36992 * 331.83055 * 17 16 15 44 44 H 1.09004 * 108.94957 * 80.11915 * 18 17 16 45 45 H 1.09000 * 108.94774 * 198.75505 * 18 17 16 46 46 H 0.97000 * 120.00099 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.44873 * 330.73458 * 28 19 18 48 48 H 1.09000 * 109.44670 * 210.79313 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3841 -0.0005 5 6 1.9718 3.5945 -0.0011 6 6 3.3543 3.5975 -0.0016 7 7 4.0335 2.4674 0.0036 8 6 3.4306 1.2950 -0.0008 9 6 4.2543 0.0330 -0.0001 10 6 4.5284 -0.3887 -1.4208 11 8 4.0969 0.2704 -2.3429 12 7 5.2521 -1.4988 -1.6665 13 6 5.5191 -1.9085 -3.0474 14 1 5.6371 -1.0202 -3.6681 15 6 6.7581 -2.7000 -3.0896 16 6 7.1846 -3.1255 -4.4913 17 6 6.4687 -4.3994 -4.8669 18 6 5.1580 -4.0716 -5.6051 19 7 4.4529 -2.9237 -5.0023 20 6 3.8936 -1.9885 -5.8316 21 1 3.7606 -0.9732 -5.4884 22 6 3.4975 -2.3455 -7.1132 23 7 3.3663 -3.6158 -7.4316 24 14 3.1506 -1.0229 -8.3861 25 1 4.3749 -0.2107 -8.6021 26 1 2.7482 -1.6606 -9.6654 27 1 2.0539 -0.1463 -7.9028 28 6 4.3274 -2.7463 -3.5730 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 0.2185 2.3518 -0.0002 33 1 1.4234 4.5250 -0.0019 34 1 3.8850 4.5381 -0.0016 35 1 3.7077 -0.7574 0.5144 36 1 5.1983 0.2155 0.5133 37 1 5.5969 -2.0261 -0.9289 38 1 7.5610 -2.1100 -2.6477 39 1 6.6176 -3.5954 -2.4839 40 1 6.9285 -2.3408 -5.2033 41 1 8.2613 -3.2946 -4.5082 42 1 7.1094 -4.9963 -5.5161 43 1 6.2409 -4.9657 -3.9640 44 1 5.3861 -3.8402 -6.6456 45 1 4.5059 -4.9445 -5.5730 46 1 3.0892 -3.8653 -8.3271 47 1 4.3257 -3.7209 -3.0850 48 1 3.3941 -2.2283 -3.3522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034369306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:48 Heat of formation + Delta-G solvation = -14.314443 kcal Electronic energy + Delta-G solvation = -29606.971981 eV Core-core repulsion = 25663.042099 eV Total energy + Delta-G solvation = -3943.929882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88483 -39.37944 -38.20336 -37.51329 -34.44751 -33.19060 -33.11218 -31.54757 -30.84692 -30.11833 -28.12054 -27.51378 -25.86506 -24.20136 -23.21600 -22.97438 -22.36452 -20.13947 -19.93801 -19.08534 -18.20541 -17.23840 -16.83997 -16.51495 -16.46014 -15.82713 -15.64144 -15.03192 -14.58259 -14.47506 -14.26352 -14.02119 -13.86445 -13.52880 -13.37256 -13.22198 -12.91634 -12.55312 -12.46802 -12.35662 -12.02575 -11.91801 -11.57653 -11.52688 -11.38981 -10.98901 -10.82906 -10.68634 -10.50868 -10.07885 -10.02754 -9.87844 -9.66361 -9.65124 -9.57281 -9.49832 -9.34691 -8.67308 -8.39555 -8.23678 -6.55250 -5.67723 -3.10487 1.01594 1.20167 3.05781 3.11377 3.42722 3.47877 3.51068 3.55860 3.86491 4.23160 4.50124 4.60252 4.62020 4.84285 4.96638 5.03140 5.08816 5.19214 5.32212 5.33441 5.34797 5.41865 5.45154 5.53491 5.60346 5.69848 5.85044 5.90309 5.98129 6.08159 6.12481 6.23315 6.33450 6.39499 6.47164 6.66572 6.71282 6.83406 6.85794 6.93062 7.01649 7.08042 7.22387 7.52212 7.79287 7.92723 7.96464 7.98980 8.59305 8.72036 9.36076 10.01567 10.45176 11.39939 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003627 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.614084 B = 7717.650970 C = 8808.206300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.061 3.939 7 N -0.440 5.440 8 C 0.130 3.870 9 C -0.086 4.086 10 C 0.518 3.482 11 O -0.524 6.524 12 N -0.725 5.725 13 C 0.115 3.885 14 H 0.086 0.914 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.143 4.143 18 C 0.177 3.823 19 N -0.584 5.584 20 C -0.252 4.252 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.907 5.907 24 Si 0.899 3.101 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.159 3.841 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.391 0.609 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.252 0.748 47 H 0.030 0.970 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 6.568 19.367 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.047 3.953 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.096 4.096 7 N -0.149 5.149 8 C -0.011 4.011 9 C -0.127 4.127 10 C 0.302 3.698 11 O -0.399 6.399 12 N -0.376 5.376 13 C 0.009 3.991 14 H 0.104 0.896 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.052 3.948 19 N -0.305 5.305 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.552 5.552 24 Si 0.729 3.271 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.029 3.971 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.224 0.776 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.255 6.773 18.511 19.713 hybrid contribution -1.287 0.595 -0.395 1.472 sum -1.032 7.369 18.116 19.585 Atomic orbital electron populations 1.23118 0.78104 1.04490 1.01205 1.86117 1.21575 1.25801 1.88095 1.19841 0.93102 0.85264 0.97111 1.21650 1.00709 0.92160 1.04707 1.21945 0.95765 0.98154 0.99687 1.22558 0.91428 0.96255 0.99325 1.67433 1.40020 0.97523 1.09900 1.19927 0.87760 0.93388 0.99999 1.20459 1.01328 0.94431 0.96490 1.20149 0.78532 0.80769 0.90345 1.90764 1.49851 1.53379 1.45944 1.46111 1.55258 1.26923 1.09323 1.21210 0.97403 0.99680 0.80807 0.89598 1.20567 0.96635 0.99298 0.98390 1.20828 0.97608 0.99311 0.96147 1.22079 0.99535 0.96460 1.00140 1.21042 0.88029 0.89229 0.96515 1.43577 1.61092 1.26469 0.99382 1.19275 1.33840 0.90431 0.94673 0.91441 1.24987 0.99398 0.95727 0.99260 1.70070 1.50964 1.14549 1.19657 0.86413 0.78312 0.81399 0.80962 1.21065 1.21747 1.20971 1.20905 0.94783 0.95613 0.85751 0.92361 0.87772 0.92789 0.84371 0.84631 0.82556 0.87200 0.87395 0.77617 0.93447 0.92887 0.90520 0.93466 0.92969 0.93711 0.90686 0.95824 0.93816 0.95183 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.83 101.05 0.99 1.23 16 2 O -0.30 -4.00 9.55 -19.47 -0.19 -4.18 16 3 C 0.09 1.31 6.67 -39.08 -0.26 1.05 16 4 C -0.17 -1.89 9.14 -39.14 -0.36 -2.25 16 5 C -0.14 -1.42 10.11 -39.47 -0.40 -1.82 16 6 C 0.06 0.73 11.18 -17.54 -0.20 0.54 16 7 N -0.44 -6.49 10.27 -9.35 -0.10 -6.58 16 8 C 0.13 1.91 5.29 -82.42 -0.44 1.48 16 9 C -0.09 -1.13 5.77 -29.03 -0.17 -1.29 16 10 C 0.52 8.87 7.79 -10.98 -0.09 8.78 16 11 O -0.52 -11.79 15.68 5.56 0.09 -11.71 16 12 N -0.72 -11.10 5.05 -55.63 -0.28 -11.38 16 13 C 0.12 2.17 2.34 -69.79 -0.16 2.00 16 14 H 0.09 1.96 7.55 -51.93 -0.39 1.57 16 15 C -0.11 -1.78 4.55 -29.79 -0.14 -1.92 16 16 C -0.10 -1.77 5.51 -28.02 -0.15 -1.93 16 17 C -0.14 -2.68 5.71 -27.30 -0.16 -2.84 16 18 C 0.18 4.26 4.67 -2.95 -0.01 4.24 16 19 N -0.58 -14.91 2.27 -172.10 -0.39 -15.30 16 20 C -0.25 -7.25 9.44 -15.06 -0.14 -7.39 16 21 H 0.07 2.03 7.88 -52.49 -0.41 1.61 16 22 C 0.00 0.12 4.87 -17.43 -0.08 0.03 16 23 N -0.91 -26.85 11.01 55.49 0.61 -26.24 16 24 Si 0.90 22.92 29.58 -169.99 -5.03 17.89 16 25 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 C 0.16 3.52 5.24 -4.09 -0.02 3.49 16 29 H 0.06 0.53 7.70 -51.93 -0.40 0.13 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.36 7.70 -51.93 -0.40 -0.04 16 32 H 0.14 1.19 6.45 -52.49 -0.34 0.85 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.19 7.52 -51.93 -0.39 0.80 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.39 4.43 8.58 -40.82 -0.35 4.08 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.77 7.36 -51.92 -0.38 0.39 16 40 H 0.08 1.59 7.48 -51.93 -0.39 1.20 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 44 H 0.07 2.01 6.33 -51.93 -0.33 1.69 16 45 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 48 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -35.75 383.92 -8.79 -44.54 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.51 Total: 3.75 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.78 Total: 3.42 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.16 Total: -59.50 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.10 Total: -15.89 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.75 -8.79 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034369306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.226 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds