Wall clock time and date at job start Tue Mar 31 2020 17:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35665 * 117.00362 * 2 1 4 4 C 1.38923 * 119.68777 * 180.30090 * 3 2 1 5 5 C 1.38382 * 119.11380 * 180.25255 * 4 3 2 6 6 C 1.50696 * 120.75741 * 179.72857 * 5 4 3 7 7 C 1.50699 * 109.47524 * 269.72155 * 6 5 4 8 8 O 1.21280 * 119.99847 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00125 * 179.72120 * 7 6 5 10 10 C 1.46503 * 120.00325 * 180.27430 * 9 7 6 11 11 H 1.09004 * 109.32228 * 35.34849 * 10 9 7 12 12 C 1.47087 * 109.33149 * 155.00358 * 10 9 7 13 13 C 1.52568 * 114.32842 * 183.06455 * 12 10 9 14 14 C 1.50886 * 109.35470 * 274.98267 * 13 12 10 15 15 C 1.53950 * 110.09337 * 91.89011 * 14 13 12 16 16 N 1.47601 * 112.14107 * 319.43328 * 15 14 13 17 17 C 1.36938 * 118.64572 * 137.86950 * 16 15 14 18 18 H 1.08001 * 120.00344 * 206.51682 * 17 16 15 19 19 C 1.38814 * 119.99679 * 26.51031 * 17 16 15 20 20 N 1.31621 * 120.00235 * 15.67334 * 19 17 16 21 21 Si 1.86796 * 119.99966 * 195.67489 * 19 17 16 22 22 H 1.48500 * 109.47237 * 59.99869 * 21 19 17 23 23 H 1.48502 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47100 * 300.00214 * 21 19 17 25 25 C 1.44584 * 122.71485 * 317.86995 * 16 15 14 26 26 C 1.38830 * 118.48384 * 359.46064 * 5 4 3 27 27 C 1.38048 * 119.28954 * 0.27277 * 26 5 4 28 28 N 1.31968 * 120.83716 * 0.02562 * 27 26 5 29 29 H 1.09000 * 109.47311 * 59.99454 * 1 2 3 30 30 H 1.09001 * 109.47454 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46576 * 300.00053 * 1 2 3 32 32 H 1.08003 * 120.44476 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.46792 * 149.71875 * 6 5 4 34 34 H 1.09000 * 109.46993 * 29.72627 * 6 5 4 35 35 H 0.97008 * 120.00436 * 0.28531 * 9 7 6 36 36 H 1.08996 * 108.51571 * 304.31942 * 12 10 9 37 37 H 1.08997 * 108.51208 * 61.80832 * 12 10 9 38 38 H 1.08998 * 109.48988 * 34.94187 * 13 12 10 39 39 H 1.08999 * 109.49410 * 154.99630 * 13 12 10 40 40 H 1.08994 * 109.36911 * 212.08211 * 14 13 12 41 41 H 1.09001 * 109.36578 * 331.82613 * 14 13 12 42 42 H 1.08992 * 108.94716 * 80.11933 * 15 14 13 43 43 H 1.09001 * 108.94461 * 198.75501 * 15 14 13 44 44 H 0.97001 * 120.00006 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.44857 * 330.68750 * 25 16 15 46 46 H 1.08999 * 109.45261 * 210.76639 * 25 16 15 47 47 H 1.07998 * 120.35571 * 180.25289 * 26 5 4 48 48 H 1.08002 * 119.58386 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4327 1.2738 -0.0063 5 6 4.0487 2.5130 -0.0009 6 6 5.5513 2.6267 -0.0014 7 6 6.0527 2.6648 1.4193 8 8 5.2672 2.6050 2.3413 9 7 7.3744 2.7591 1.6651 10 6 7.8624 2.7902 3.0461 11 1 7.2363 2.1467 3.6643 12 6 9.2493 2.3018 3.0836 13 6 9.8480 2.2166 4.4843 14 6 10.4104 3.5625 4.8704 15 6 9.3451 4.3868 5.6158 16 7 8.0059 4.2402 5.0128 17 6 6.9249 4.0979 5.8414 18 1 6.0430 3.5799 5.4943 19 6 6.9627 4.6192 7.1273 20 7 7.8832 5.5019 7.4529 21 14 5.7073 4.0679 8.3959 22 1 5.8207 2.6014 8.5998 23 1 5.9615 4.7680 9.6806 24 1 4.3410 4.3966 7.9155 25 6 7.7882 4.2407 3.5835 26 6 3.2507 3.6490 -0.0008 27 6 1.8773 3.5096 -0.0003 28 7 1.3187 2.3140 0.0006 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 4.0230 0.3693 -0.0108 33 1 5.8463 3.5414 -0.5155 34 1 5.9806 1.7666 -0.5153 35 1 8.0028 2.8067 0.9276 36 1 9.2791 1.3095 2.6336 37 1 9.8675 2.9690 2.4830 38 1 9.0726 1.9293 5.1944 39 1 10.6445 1.4727 4.4948 40 1 11.2757 3.4204 5.5177 41 1 10.7156 4.0981 3.9715 42 1 9.3041 4.0563 6.6536 43 1 9.6308 5.4384 5.5920 44 1 7.9093 5.8665 8.3514 45 1 8.5545 4.8465 3.0999 46 1 6.8051 4.6585 3.3662 47 1 3.6996 4.6313 -0.0008 48 1 1.2520 4.3902 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034402848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:54 Heat of formation + Delta-G solvation = -16.121761 kcal Electronic energy + Delta-G solvation = -29002.192590 eV Core-core repulsion = 25058.184337 eV Total energy + Delta-G solvation = -3944.008253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78105 -39.64104 -38.12662 -37.51103 -34.57649 -33.80071 -33.21073 -30.97801 -30.81322 -30.32651 -28.47393 -27.16990 -25.91679 -24.26263 -23.54952 -23.14881 -22.10064 -20.27073 -20.04509 -19.14973 -17.97958 -17.21168 -16.89716 -16.56463 -16.11385 -16.04790 -15.86262 -15.20063 -14.81152 -14.53851 -14.34301 -14.10701 -13.82849 -13.59969 -13.32701 -13.14365 -12.91874 -12.62354 -12.53156 -12.35640 -12.10514 -12.08074 -11.69564 -11.48429 -11.30828 -11.02994 -10.88926 -10.73512 -10.55815 -10.12172 -10.11479 -9.93752 -9.74621 -9.70705 -9.62764 -9.56469 -9.38518 -8.79669 -8.56266 -8.28861 -6.60655 -5.71818 -3.15110 1.09369 1.19212 2.89079 2.97789 3.38148 3.46137 3.49605 3.54155 3.79847 4.22722 4.44706 4.58588 4.79336 4.99869 5.01299 5.06034 5.12926 5.16695 5.25201 5.29809 5.31639 5.37476 5.46475 5.48764 5.54901 5.65507 5.75988 5.82008 6.00316 6.04472 6.14875 6.21741 6.31179 6.33042 6.39699 6.60691 6.63126 6.73052 6.76499 6.84534 6.94319 7.12580 7.14533 7.47126 7.74789 7.78207 7.79891 7.95001 8.52916 8.55799 9.31612 9.96705 10.40135 11.35875 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003126 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.076034 B = 8955.401039 C =10326.759424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.319 3.681 4 C -0.176 4.176 5 C 0.017 3.983 6 C -0.106 4.106 7 C 0.509 3.491 8 O -0.520 6.520 9 N -0.724 5.724 10 C 0.114 3.886 11 H 0.087 0.913 12 C -0.111 4.111 13 C -0.101 4.101 14 C -0.143 4.143 15 C 0.176 3.824 16 N -0.584 5.584 17 C -0.256 4.256 18 H 0.069 0.931 19 C 0.005 3.995 20 N -0.907 5.907 21 Si 0.900 3.100 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.159 3.841 26 C -0.193 4.193 27 C 0.139 3.861 28 N -0.543 5.543 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.392 0.608 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.253 0.747 45 H 0.030 0.970 46 H 0.048 0.952 47 H 0.137 0.863 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -7.098 -19.301 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.140 3.860 4 C -0.197 4.197 5 C 0.008 3.992 6 C -0.146 4.146 7 C 0.293 3.707 8 O -0.394 6.394 9 N -0.375 5.375 10 C 0.008 3.992 11 H 0.105 0.895 12 C -0.149 4.149 13 C -0.139 4.139 14 C -0.182 4.182 15 C 0.051 3.949 16 N -0.305 5.305 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.193 4.193 20 N -0.552 5.552 21 Si 0.730 3.270 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.029 3.971 26 C -0.213 4.213 27 C -0.016 4.016 28 N -0.267 5.267 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.225 0.775 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.155 0.845 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.668 -7.381 -18.430 20.394 hybrid contribution 0.373 -0.020 0.378 0.531 sum -4.295 -7.401 -18.052 19.977 Atomic orbital electron populations 1.22828 0.77397 1.02736 1.02415 1.86222 1.22795 1.24707 1.88013 1.19720 0.89203 0.84659 0.92422 1.20827 0.92024 0.98863 1.07984 1.19448 0.94614 0.92318 0.92777 1.20730 0.91869 1.05569 0.96403 1.20202 0.82834 0.77281 0.90371 1.90814 1.54917 1.47884 1.45805 1.46159 1.06726 1.75101 1.09501 1.21262 0.94742 1.02661 0.80583 0.89522 1.20561 0.95981 0.99847 0.98494 1.20831 0.99748 0.97288 0.96059 1.22080 0.99506 0.96486 1.00152 1.21052 0.81665 0.95684 0.96467 1.43575 1.03262 1.84277 0.99337 1.19273 0.95437 1.29392 0.94444 0.91374 1.24999 0.98246 0.96820 0.99239 1.70068 1.36452 1.29223 1.19416 0.86403 0.81411 0.78333 0.80879 1.21044 1.21717 1.20865 1.20901 0.98822 0.91485 0.85881 1.21846 0.94783 0.99365 1.05343 1.22319 0.92720 0.93553 0.93005 1.67274 1.41009 0.98879 1.19566 0.92452 0.88801 0.92269 0.84405 0.87372 0.87655 0.77548 0.93479 0.92862 0.90485 0.93417 0.92917 0.93713 0.90655 0.95766 0.93744 0.95171 0.93399 0.84507 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -4.02 10.48 -18.70 -0.20 -4.21 16 3 C 0.32 4.43 7.49 -17.12 -0.13 4.30 16 4 C -0.18 -2.29 9.74 -39.27 -0.38 -2.67 16 5 C 0.02 0.20 4.41 -104.35 -0.46 -0.26 16 6 C -0.11 -1.04 5.88 -29.04 -0.17 -1.21 16 7 C 0.51 7.50 7.75 -10.99 -0.09 7.42 16 8 O -0.52 -10.63 15.70 5.56 0.09 -10.55 16 9 N -0.72 -9.74 5.06 -55.62 -0.28 -10.02 16 10 C 0.11 1.99 2.33 -69.78 -0.16 1.83 16 11 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 12 C -0.11 -1.67 4.54 -29.79 -0.14 -1.80 16 13 C -0.10 -1.71 5.51 -28.01 -0.15 -1.86 16 14 C -0.14 -2.60 5.71 -27.30 -0.16 -2.75 16 15 C 0.18 4.15 4.67 -2.94 -0.01 4.13 16 16 N -0.58 -14.49 2.27 -172.08 -0.39 -14.88 16 17 C -0.26 -7.20 9.44 -15.06 -0.14 -7.35 16 18 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 19 C 0.01 0.14 4.87 -17.43 -0.08 0.06 16 20 N -0.91 -26.54 11.01 55.49 0.61 -25.93 16 21 Si 0.90 22.68 29.58 -169.99 -5.03 17.65 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.16 3.35 5.23 -4.08 -0.02 3.33 16 26 C -0.19 -2.27 9.81 -39.43 -0.39 -2.66 16 27 C 0.14 1.65 11.18 -17.56 -0.20 1.46 16 28 N -0.54 -7.40 9.22 -13.33 -0.12 -7.53 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.11 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.39 3.72 8.57 -40.82 -0.35 3.37 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 38 H 0.08 1.54 7.48 -51.93 -0.39 1.16 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 42 H 0.08 1.99 6.33 -51.93 -0.33 1.66 16 43 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 46 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 47 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -34.76 387.61 -8.77 -43.53 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.66 Total: 2.68 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.63 Total: 3.42 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.18 Total: -58.35 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.11 Total: -14.76 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.76 -8.77 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034402848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.410 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds