Wall clock time and date at job start Tue Mar 31 2020 17:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35665 * 117.00362 * 2 1 4 4 C 1.38923 * 119.68777 * 180.30090 * 3 2 1 5 5 C 1.38382 * 119.11380 * 180.25255 * 4 3 2 6 6 C 1.50696 * 120.75741 * 179.72857 * 5 4 3 7 7 C 1.50699 * 109.47524 * 269.72155 * 6 5 4 8 8 O 1.21280 * 119.99847 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00125 * 179.72120 * 7 6 5 10 10 C 1.46503 * 120.00325 * 180.27430 * 9 7 6 11 11 H 1.09004 * 109.32228 * 35.34849 * 10 9 7 12 12 C 1.47087 * 109.33149 * 155.00358 * 10 9 7 13 13 C 1.52568 * 114.32842 * 183.06455 * 12 10 9 14 14 C 1.50886 * 109.35470 * 274.98267 * 13 12 10 15 15 C 1.53950 * 110.09337 * 91.89011 * 14 13 12 16 16 N 1.47601 * 112.14107 * 319.43328 * 15 14 13 17 17 C 1.36938 * 118.64572 * 137.86950 * 16 15 14 18 18 H 1.08001 * 120.00344 * 206.51682 * 17 16 15 19 19 C 1.38814 * 119.99679 * 26.51031 * 17 16 15 20 20 N 1.31621 * 120.00235 * 15.67334 * 19 17 16 21 21 Si 1.86796 * 119.99966 * 195.67489 * 19 17 16 22 22 H 1.48500 * 109.47237 * 59.99869 * 21 19 17 23 23 H 1.48502 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47100 * 300.00214 * 21 19 17 25 25 C 1.44584 * 122.71485 * 317.86995 * 16 15 14 26 26 C 1.38830 * 118.48384 * 359.46064 * 5 4 3 27 27 C 1.38048 * 119.28954 * 0.27277 * 26 5 4 28 28 N 1.31968 * 120.83716 * 0.02562 * 27 26 5 29 29 H 1.09000 * 109.47311 * 59.99454 * 1 2 3 30 30 H 1.09001 * 109.47454 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46576 * 300.00053 * 1 2 3 32 32 H 1.08003 * 120.44476 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.46792 * 149.71875 * 6 5 4 34 34 H 1.09000 * 109.46993 * 29.72627 * 6 5 4 35 35 H 0.97008 * 120.00436 * 0.28531 * 9 7 6 36 36 H 1.08996 * 108.51571 * 304.31942 * 12 10 9 37 37 H 1.08997 * 108.51208 * 61.80832 * 12 10 9 38 38 H 1.08998 * 109.48988 * 34.94187 * 13 12 10 39 39 H 1.08999 * 109.49410 * 154.99630 * 13 12 10 40 40 H 1.08994 * 109.36911 * 212.08211 * 14 13 12 41 41 H 1.09001 * 109.36578 * 331.82613 * 14 13 12 42 42 H 1.08992 * 108.94716 * 80.11933 * 15 14 13 43 43 H 1.09001 * 108.94461 * 198.75501 * 15 14 13 44 44 H 0.97001 * 120.00006 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.44857 * 330.68750 * 25 16 15 46 46 H 1.08999 * 109.45261 * 210.76639 * 25 16 15 47 47 H 1.07998 * 120.35571 * 180.25289 * 26 5 4 48 48 H 1.08002 * 119.58386 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4327 1.2738 -0.0063 5 6 4.0487 2.5130 -0.0009 6 6 5.5513 2.6267 -0.0014 7 6 6.0527 2.6648 1.4193 8 8 5.2672 2.6050 2.3413 9 7 7.3744 2.7591 1.6651 10 6 7.8624 2.7902 3.0461 11 1 7.2363 2.1467 3.6643 12 6 9.2493 2.3018 3.0836 13 6 9.8480 2.2166 4.4843 14 6 10.4104 3.5625 4.8704 15 6 9.3451 4.3868 5.6158 16 7 8.0059 4.2402 5.0128 17 6 6.9249 4.0979 5.8414 18 1 6.0430 3.5799 5.4943 19 6 6.9627 4.6192 7.1273 20 7 7.8832 5.5019 7.4529 21 14 5.7073 4.0679 8.3959 22 1 5.8207 2.6014 8.5998 23 1 5.9615 4.7680 9.6806 24 1 4.3410 4.3966 7.9155 25 6 7.7882 4.2407 3.5835 26 6 3.2507 3.6490 -0.0008 27 6 1.8773 3.5096 -0.0003 28 7 1.3187 2.3140 0.0006 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 4.0230 0.3693 -0.0108 33 1 5.8463 3.5414 -0.5155 34 1 5.9806 1.7666 -0.5153 35 1 8.0028 2.8067 0.9276 36 1 9.2791 1.3095 2.6336 37 1 9.8675 2.9690 2.4830 38 1 9.0726 1.9293 5.1944 39 1 10.6445 1.4727 4.4948 40 1 11.2757 3.4204 5.5177 41 1 10.7156 4.0981 3.9715 42 1 9.3041 4.0563 6.6536 43 1 9.6308 5.4384 5.5920 44 1 7.9093 5.8665 8.3514 45 1 8.5545 4.8465 3.0999 46 1 6.8051 4.6585 3.3662 47 1 3.6996 4.6313 -0.0008 48 1 1.2520 4.3902 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034402848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:53 Heat of formation + Delta-G solvation = -41.319474 kcal Electronic energy + Delta-G solvation = -29003.285245 eV Core-core repulsion = 25058.184337 eV Total energy + Delta-G solvation = -3945.100908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73171 -40.88864 -39.35055 -38.73111 -36.20496 -34.80651 -34.76599 -32.88806 -31.87136 -31.64917 -29.48426 -28.06252 -27.76088 -25.82745 -24.92711 -24.43157 -23.17583 -21.58973 -21.38873 -20.79064 -18.93220 -18.60317 -18.14110 -17.98426 -17.43660 -16.96605 -16.89909 -16.59380 -16.41730 -15.95144 -15.60417 -15.25475 -15.11228 -15.08134 -14.68321 -14.41163 -14.16847 -14.03836 -13.81637 -13.72787 -13.28371 -13.09772 -12.99452 -12.89812 -12.79513 -12.51948 -12.44902 -12.29969 -12.17400 -12.05535 -11.63554 -11.46251 -11.36792 -11.12557 -11.06226 -10.68914 -10.54753 -10.46369 -10.07121 -9.49169 -8.63253 -7.89091 -5.34117 0.16617 0.24668 1.39834 1.40506 1.48767 1.75863 2.09939 2.28162 2.49749 2.83163 3.23516 3.34637 3.59032 3.73227 3.93808 3.98110 4.04968 4.14690 4.15134 4.19858 4.30673 4.39898 4.42572 4.46141 4.53552 4.55963 4.59948 4.73050 4.75316 4.78814 4.79603 4.92678 5.01686 5.07101 5.15545 5.25369 5.30283 5.32881 5.37863 5.45584 5.48458 5.62517 5.70834 5.72745 5.83591 6.23211 6.39624 6.72217 6.84212 7.17613 7.45732 7.95182 8.28780 9.14844 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.003126 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.076034 B = 8955.401039 C =10326.759424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.296 3.704 4 C -0.191 4.191 5 C 0.006 3.994 6 C -0.091 4.091 7 C 0.506 3.494 8 O -0.585 6.585 9 N -0.707 5.707 10 C 0.135 3.865 11 H 0.039 0.961 12 C -0.108 4.108 13 C -0.099 4.099 14 C -0.130 4.130 15 C 0.184 3.816 16 N -0.597 5.597 17 C -0.261 4.261 18 H 0.045 0.955 19 C -0.041 4.041 20 N -0.930 5.930 21 Si 0.954 3.046 22 H -0.281 1.281 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.159 3.841 26 C -0.200 4.200 27 C 0.127 3.873 28 N -0.560 5.560 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.048 0.952 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.418 0.582 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.037 0.963 43 H -0.005 1.005 44 H 0.250 0.750 45 H 0.051 0.949 46 H 0.014 0.986 47 H 0.157 0.843 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -7.859 -21.912 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.118 3.882 4 C -0.211 4.211 5 C -0.002 4.002 6 C -0.131 4.131 7 C 0.293 3.707 8 O -0.465 6.465 9 N -0.359 5.359 10 C 0.027 3.973 11 H 0.057 0.943 12 C -0.146 4.146 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.059 3.941 16 N -0.319 5.319 17 C -0.392 4.392 18 H 0.063 0.937 19 C -0.237 4.237 20 N -0.576 5.576 21 Si 0.782 3.218 22 H -0.207 1.207 23 H -0.210 1.210 24 H -0.212 1.212 25 C 0.031 3.969 26 C -0.220 4.220 27 C -0.028 4.028 28 N -0.284 5.284 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.014 0.986 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.174 0.826 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.908 -8.155 -21.116 22.822 hybrid contribution -0.223 0.252 1.154 1.202 sum -3.130 -7.903 -19.962 21.697 Atomic orbital electron populations 1.23021 0.76007 1.04532 1.02066 1.86197 1.24300 1.24619 1.88073 1.20042 0.89928 0.85038 0.93237 1.21094 0.91990 0.99817 1.08221 1.19793 0.96096 0.92070 0.92259 1.20777 0.90148 1.09119 0.93010 1.21098 0.82441 0.75363 0.91833 1.90805 1.56555 1.50747 1.48352 1.45890 1.07156 1.74284 1.08611 1.20642 0.95938 0.98702 0.82025 0.94296 1.20503 0.94007 1.02122 0.97936 1.20818 0.99615 0.97159 0.96190 1.21936 0.97813 0.96430 1.00680 1.20866 0.82636 0.94972 0.95604 1.43711 1.02976 1.84626 1.00617 1.19280 0.95866 1.28614 0.95426 0.93694 1.25584 1.00160 0.97256 1.00651 1.70191 1.37750 1.30166 1.19455 0.85560 0.79221 0.77986 0.79008 1.20728 1.20972 1.21184 1.21003 0.97521 0.94168 0.84201 1.22186 0.94890 1.00309 1.04634 1.22843 0.93575 0.93874 0.92494 1.67294 1.41565 0.99412 1.20149 0.92064 0.85962 0.93308 0.83450 0.83675 0.83940 0.74415 0.90583 0.89813 0.94630 0.89947 0.91202 0.91332 0.94408 0.98641 0.94047 0.93078 0.96781 0.82577 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.38 113.37 1.18 1.91 16 2 O -0.32 -8.48 10.48 -89.81 -0.94 -9.42 16 3 C 0.30 8.30 7.49 84.79 0.63 8.94 16 4 C -0.19 -4.86 9.74 22.47 0.22 -4.64 16 5 C 0.01 0.14 4.41 -19.69 -0.09 0.05 16 6 C -0.09 -1.49 5.88 29.10 0.17 -1.32 16 7 C 0.51 14.10 7.75 87.66 0.68 14.78 16 8 O -0.59 -24.49 15.70 -3.03 -0.05 -24.54 16 9 N -0.71 -17.10 5.06 -448.28 -2.27 -19.37 16 10 C 0.13 4.56 2.33 43.79 0.10 4.66 16 11 H 0.04 1.72 7.58 -2.38 -0.02 1.70 16 12 C -0.11 -2.85 4.54 28.61 0.13 -2.72 16 13 C -0.10 -3.12 5.51 29.76 0.16 -2.95 16 14 C -0.13 -4.43 5.71 30.23 0.17 -4.26 16 15 C 0.18 8.83 4.67 86.49 0.40 9.23 16 16 N -0.60 -30.58 2.27 -698.35 -1.59 -32.16 16 17 C -0.26 -15.42 9.44 84.03 0.79 -14.63 16 18 H 0.05 2.82 7.88 -2.91 -0.02 2.79 16 19 C -0.04 -2.41 4.87 84.86 0.41 -1.99 16 20 N -0.93 -56.32 11.01 21.65 0.24 -56.08 16 21 Si 0.95 48.23 29.58 68.60 2.03 50.26 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 C 0.16 6.74 5.23 87.38 0.46 7.20 16 26 C -0.20 -4.46 9.81 22.37 0.22 -4.24 16 27 C 0.13 2.96 11.18 84.63 0.95 3.90 16 28 N -0.56 -15.34 9.22 -308.95 -2.85 -18.19 16 29 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 32 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.15 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.14 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.42 5.88 8.57 -92.70 -0.79 5.09 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.78 7.36 -2.39 -0.02 1.77 16 38 H 0.03 1.42 7.48 -2.39 -0.02 1.40 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.04 7.32 -2.39 -0.02 2.02 16 42 H 0.04 2.07 6.33 -2.39 -0.02 2.05 16 43 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.05 1.92 8.07 -2.39 -0.02 1.91 16 46 H 0.01 0.67 7.96 -2.39 -0.02 0.65 16 47 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 48 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -83.08 387.61 1.34 -81.74 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.16 Total: 13.83 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.60 Total: 13.93 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -6.46 Total: -125.80 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.99 Total: -33.96 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -83.08 1.34 -81.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034402848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.425 kcal (2) G-P(sol) polarization free energy of solvation -83.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds