Wall clock time and date at job start Tue Mar 31 2020 17:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35674 * 116.99967 * 2 1 4 4 C 1.38927 * 119.68092 * 180.29924 * 3 2 1 5 5 C 1.38375 * 119.10653 * 180.24456 * 4 3 2 6 6 C 1.50702 * 120.75360 * 179.73072 * 5 4 3 7 7 C 1.50696 * 109.47245 * 269.72395 * 6 5 4 8 8 O 1.21279 * 120.00328 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00307 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00601 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46908 * 35.00168 * 10 9 7 12 12 C 1.53000 * 109.47519 * 154.99911 * 10 9 7 13 13 C 1.52996 * 109.47359 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47465 * 300.00435 * 13 12 10 15 15 H 1.09002 * 109.46830 * 299.99968 * 14 13 12 16 16 N 1.46496 * 109.47630 * 179.97438 * 14 13 12 17 17 C 1.36934 * 120.00548 * 154.99681 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.53000 * 109.47187 * 59.99460 * 14 13 12 26 26 C 1.52995 * 109.47468 * 275.00445 * 10 9 7 27 27 C 1.38825 * 118.48845 * 359.46565 * 5 4 3 28 28 C 1.38049 * 119.28804 * 0.27038 * 27 5 4 29 29 N 1.31957 * 120.83504 * 359.97438 * 28 27 5 30 30 H 1.08994 * 109.47571 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46658 * 300.00427 * 1 2 3 32 32 H 1.09000 * 109.47310 * 60.00211 * 1 2 3 33 33 H 1.07998 * 120.44074 * 359.97438 * 4 3 2 34 34 H 1.09007 * 109.46759 * 149.72573 * 6 5 4 35 35 H 1.08995 * 109.47122 * 29.73015 * 6 5 4 36 36 H 0.97006 * 119.99876 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.46821 * 60.00204 * 12 10 9 38 38 H 1.09006 * 109.47229 * 300.00745 * 12 10 9 39 39 H 1.08997 * 109.47363 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.47071 * 60.00256 * 13 12 10 41 41 H 0.96999 * 119.99694 * 335.00205 * 16 14 13 42 42 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.46821 * 60.00502 * 25 14 13 44 44 H 1.09006 * 109.47229 * 179.97438 * 25 14 13 45 45 H 1.09002 * 109.46830 * 299.99770 * 26 10 9 46 46 H 1.09007 * 109.47250 * 59.99436 * 26 10 9 47 47 H 1.08004 * 120.35479 * 180.25187 * 27 5 4 48 48 H 1.08001 * 119.57767 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0063 5 6 4.0486 2.5130 -0.0011 6 6 5.5513 2.6267 -0.0015 7 6 6.0526 2.6650 1.4191 8 8 5.2671 2.6053 2.3412 9 7 7.3740 2.7645 1.6650 10 6 7.8614 2.8023 3.0460 11 1 7.2351 2.1646 3.6699 12 6 9.3057 2.2995 3.0911 13 6 9.8144 2.3384 4.5335 14 6 9.7581 3.7754 5.0557 15 1 10.3845 4.4133 4.4322 16 7 10.2446 3.8125 6.4370 17 6 10.7700 4.9696 6.9471 18 1 10.8253 5.8550 6.3310 19 6 11.2315 5.0047 8.2557 20 7 11.7361 6.1171 8.7461 21 14 11.1352 3.4734 9.3213 22 1 9.8370 3.4528 10.0421 23 1 11.2445 2.2659 8.4639 24 1 12.2475 3.4843 10.3051 25 6 8.3137 4.2781 5.0106 26 6 7.8051 4.2395 3.5676 27 6 3.2506 3.6490 -0.0010 28 6 1.8772 3.5096 -0.0005 29 7 1.3187 2.3140 -0.0005 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0228 0.3694 -0.0108 34 1 5.8462 3.5415 -0.5157 35 1 5.9806 1.7666 -0.5153 36 1 8.0024 2.8119 0.9275 37 1 9.9320 2.9373 2.4673 38 1 9.3458 1.2756 2.7195 39 1 10.8432 1.9798 4.5657 40 1 9.1881 1.7004 5.1570 41 1 10.1947 3.0174 6.9903 42 1 12.0582 6.1416 9.6607 43 1 7.6873 3.6402 5.6341 44 1 8.2735 5.3018 5.3831 45 1 8.4314 4.8772 2.9438 46 1 6.7760 4.5977 3.5355 47 1 3.6995 4.6313 -0.0011 48 1 1.2519 4.3902 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034734609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:11 Heat of formation + Delta-G solvation = -38.354639 kcal Electronic energy + Delta-G solvation = -27835.441841 eV Core-core repulsion = 23890.469498 eV Total energy + Delta-G solvation = -3944.972343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03508 -40.04392 -38.41904 -37.87832 -35.03824 -34.09098 -33.07369 -31.11677 -30.99399 -30.50222 -29.28380 -27.67698 -27.10015 -23.81116 -23.48774 -22.60755 -22.31505 -20.99939 -20.52645 -19.66163 -18.23778 -17.64874 -17.43351 -17.12236 -16.39995 -16.25112 -16.14591 -15.44800 -15.05725 -14.69649 -14.53183 -14.38058 -14.07833 -13.83236 -13.56177 -13.53052 -13.19210 -12.94915 -12.78573 -12.57145 -12.32518 -12.15854 -11.98655 -11.90222 -11.74885 -11.50624 -11.18382 -10.90927 -10.87408 -10.68250 -10.29550 -10.20304 -10.18522 -9.96990 -9.84165 -9.72923 -9.56764 -9.05920 -8.87790 -8.78952 -7.25278 -5.76024 -3.11257 0.85372 0.95215 2.46017 2.76206 3.00583 3.38480 3.41889 3.46460 3.53417 3.99625 4.17748 4.52503 4.60203 4.61688 4.76849 4.81173 4.84475 4.94093 4.95626 4.99872 5.03939 5.06967 5.11286 5.31063 5.42356 5.45814 5.50588 5.53473 5.57675 5.60735 5.75103 5.77522 5.90784 5.96282 6.09046 6.09572 6.16239 6.17984 6.34009 6.44450 6.51690 6.62603 6.88775 6.93537 7.04356 7.34623 7.56066 8.00623 8.07252 8.43335 9.22134 9.94954 10.14893 11.42354 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.001942 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.286273 B =14411.615976 C =14596.506735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.320 3.680 4 C -0.176 4.176 5 C 0.013 3.987 6 C -0.106 4.106 7 C 0.514 3.486 8 O -0.528 6.528 9 N -0.725 5.725 10 C 0.145 3.855 11 H 0.087 0.913 12 C -0.118 4.118 13 C -0.124 4.124 14 C 0.182 3.818 15 H 0.055 0.945 16 N -0.750 5.750 17 C -0.241 4.241 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.277 1.277 24 H -0.292 1.292 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.195 4.195 28 C 0.140 3.860 29 N -0.542 5.542 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.137 0.863 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.951 -10.288 -25.075 31.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.142 3.858 4 C -0.197 4.197 5 C 0.005 3.995 6 C -0.146 4.146 7 C 0.299 3.701 8 O -0.404 6.404 9 N -0.376 5.376 10 C 0.041 3.959 11 H 0.105 0.895 12 C -0.157 4.157 13 C -0.163 4.163 14 C 0.072 3.928 15 H 0.073 0.927 16 N -0.392 5.392 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.218 1.218 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.215 4.215 28 C -0.015 4.015 29 N -0.266 5.266 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.155 0.845 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.225 -10.455 -24.347 32.160 hybrid contribution 0.892 -0.718 0.609 1.297 sum -17.333 -11.173 -23.738 31.445 Atomic orbital electron populations 1.22849 0.77212 1.02901 1.02456 1.86233 1.22939 1.24610 1.87894 1.19739 0.89207 0.84707 0.92194 1.20839 0.92084 0.98858 1.07907 1.19425 0.94477 0.92388 0.93183 1.20724 0.92021 1.05951 0.95893 1.20301 0.82590 0.76537 0.90666 1.90772 1.55098 1.48495 1.46040 1.46138 1.06997 1.75042 1.09435 1.21120 0.95236 0.98039 0.81514 0.89528 1.21732 0.94515 1.00910 0.98507 1.21792 1.01253 0.98931 0.94336 1.20212 0.92602 0.93229 0.86710 0.92711 1.42790 1.74810 1.11694 1.09860 1.19074 1.32131 0.89738 0.96196 0.89238 1.24676 1.00924 0.96648 0.97019 1.69704 1.47207 1.25594 1.15762 0.86549 0.77421 0.83771 0.80786 1.21122 1.20333 1.21811 1.22198 0.98784 1.02619 0.93756 1.21893 1.01126 0.95288 0.97943 1.21840 0.94816 0.99287 1.05593 1.22338 0.92698 0.93604 0.92865 1.67283 1.41034 0.98885 1.19431 0.88661 0.92259 0.92353 0.84317 0.87108 0.87308 0.76767 0.91322 0.91807 0.91272 0.92122 0.80701 0.93111 0.92627 0.91292 0.92093 0.92260 0.84532 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.33 10.48 -18.72 -0.20 -3.53 16 3 C 0.32 3.65 7.49 -17.12 -0.13 3.52 16 4 C -0.18 -1.81 9.74 -39.28 -0.38 -2.19 16 5 C 0.01 0.12 4.41 -104.35 -0.46 -0.34 16 6 C -0.11 -0.70 5.88 -29.04 -0.17 -0.87 16 7 C 0.51 5.40 7.79 -10.99 -0.09 5.31 16 8 O -0.53 -8.17 15.70 5.56 0.09 -8.08 16 9 N -0.73 -6.56 5.08 -53.81 -0.27 -6.83 16 10 C 0.14 1.73 2.45 -67.94 -0.17 1.56 16 11 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 12 C -0.12 -1.30 5.39 -26.73 -0.14 -1.44 16 13 C -0.12 -1.81 5.39 -26.74 -0.14 -1.96 16 14 C 0.18 3.35 2.77 -67.94 -0.19 3.16 16 15 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 16 N -0.75 -17.49 4.92 -53.43 -0.26 -17.76 16 17 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 18 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 21 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 25 C -0.13 -2.30 5.50 -26.71 -0.15 -2.45 16 26 C -0.12 -1.71 5.50 -26.71 -0.15 -1.86 16 27 C -0.20 -1.71 9.81 -39.43 -0.39 -2.10 16 28 C 0.14 1.29 11.18 -17.57 -0.20 1.09 16 29 N -0.54 -6.04 9.22 -13.33 -0.12 -6.16 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.11 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.11 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.40 2.28 8.60 -40.82 -0.35 1.92 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 48 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -36.10 393.57 -8.47 -44.57 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.74 Total: 7.06 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.95 Total: -4.11 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.12 Total: -59.35 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.11 Total: -11.61 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.10 -8.47 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034734609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.212 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds