Wall clock time and date at job start Tue Mar 31 2020 17:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 120.00120 * 2 1 4 4 O 1.21626 * 119.99771 * 185.61142 * 3 2 1 5 5 C 1.47267 * 119.99971 * 5.60821 * 3 2 1 6 6 C 1.46738 * 126.92227 * 187.23983 * 5 3 2 7 7 C 1.34065 * 106.31172 * 179.97438 * 6 5 3 8 8 N 1.37084 * 109.04178 * 0.02599 * 7 6 5 9 9 C 1.34580 * 109.94579 * 359.70221 * 8 7 6 10 10 C 1.47030 * 123.95687 * 179.91363 * 8 7 6 11 11 C 1.53146 * 108.83419 * 342.45573 * 10 8 7 12 12 C 1.53125 * 109.59578 * 51.21216 * 11 10 8 13 13 C 1.51085 * 126.73150 * 180.02562 * 7 6 5 14 14 C 1.46499 * 119.99928 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.91194 * 183.90640 * 14 2 1 16 16 C 1.54904 * 111.00376 * 307.80758 * 14 2 1 17 17 N 1.47746 * 104.84302 * 155.16764 * 16 14 2 18 18 C 1.36934 * 125.82851 * 155.82795 * 17 16 14 19 19 H 1.08003 * 119.99676 * 353.40686 * 18 17 16 20 20 C 1.38810 * 120.00588 * 173.40752 * 18 17 16 21 21 N 1.31625 * 119.99614 * 7.49856 * 20 18 17 22 22 Si 1.86800 * 120.00339 * 187.49539 * 20 18 17 23 23 H 1.48493 * 109.46927 * 94.98066 * 22 20 18 24 24 H 1.48506 * 109.46945 * 214.98419 * 22 20 18 25 25 H 1.48497 * 109.46991 * 334.98044 * 22 20 18 26 26 C 1.47029 * 108.52617 * 335.75169 * 17 16 14 27 27 C 1.54321 * 107.39920 * 1.17961 * 26 17 16 28 28 H 1.09005 * 110.71839 * 263.75215 * 27 26 17 29 29 O 1.42908 * 110.71732 * 140.48452 * 27 26 17 30 30 H 1.09003 * 109.47122 * 275.74391 * 1 2 3 31 31 H 1.09003 * 109.46853 * 35.73984 * 1 2 3 32 32 H 1.08996 * 109.47138 * 155.74053 * 1 2 3 33 33 H 1.08001 * 126.84491 * 359.97438 * 6 5 3 34 34 H 1.08007 * 125.72619 * 180.34647 * 9 8 7 35 35 H 1.09003 * 109.58014 * 102.25942 * 10 8 7 36 36 H 1.09001 * 109.57365 * 222.52343 * 10 8 7 37 37 H 1.09001 * 109.44620 * 171.24919 * 11 10 8 38 38 H 1.08998 * 109.44914 * 291.16760 * 11 10 8 39 39 H 1.08998 * 109.52562 * 49.73095 * 12 11 10 40 40 H 1.08999 * 109.52716 * 169.87120 * 12 11 10 41 41 H 1.09004 * 109.71286 * 283.88972 * 13 7 6 42 42 H 1.08997 * 109.72220 * 44.53981 * 13 7 6 43 43 H 1.09004 * 110.36948 * 273.92059 * 16 14 2 44 44 H 1.08997 * 110.37204 * 36.13752 * 16 14 2 45 45 H 0.96997 * 119.99916 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.87960 * 241.68461 * 26 17 16 47 47 H 1.08999 * 109.88453 * 120.67660 * 26 17 16 48 48 H 0.96689 * 114.00448 * 61.44948 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3508 1.1697 -0.1030 5 6 1.4079 2.4396 0.1246 6 6 1.9633 3.7916 -0.0048 7 6 0.9408 4.6382 0.1829 8 7 -0.2004 3.9161 0.4183 9 6 0.0733 2.5990 0.3782 10 6 -1.5172 4.5199 0.6695 11 6 -1.3220 5.9890 1.0555 12 6 -0.4338 6.6793 0.0166 13 6 0.9993 6.1475 0.1481 14 6 2.1975 -1.2687 0.0006 15 1 3.2718 -1.0977 0.0699 16 6 1.7073 -2.1923 1.1435 17 7 2.0288 -3.5607 0.6886 18 6 2.2210 -4.6496 1.4964 19 1 2.2464 -4.5282 2.5693 20 6 2.3832 -5.9093 0.9365 21 7 2.5003 -6.0395 -0.3681 22 14 2.4355 -7.4198 2.0343 23 1 1.0795 -8.0194 2.1161 24 1 3.3824 -8.4125 1.4657 25 1 2.8864 -7.0281 3.3939 26 6 2.1063 -3.5588 -0.7797 27 6 1.8484 -2.1129 -1.2535 28 1 0.8026 -1.9785 -1.5300 29 8 2.7084 -1.7774 -2.3444 30 1 -0.3633 0.1029 1.0225 31 1 -0.3633 0.8342 -0.6003 32 1 -0.3633 -0.9369 -0.4222 33 1 2.9909 4.0528 -0.2102 34 1 -0.6406 1.8018 0.5239 35 1 -2.1259 4.4571 -0.2326 36 1 -2.0131 3.9894 1.4824 37 1 -2.2912 6.4864 1.0924 38 1 -0.8473 6.0468 2.0349 39 1 -0.8113 6.4675 -0.9838 40 1 -0.4410 7.7556 0.1886 41 1 1.4470 6.5195 1.0697 42 1 1.5919 6.4730 -0.7069 43 1 2.2390 -1.9667 2.0680 44 1 0.6328 -2.0801 1.2876 45 1 2.6133 -6.9198 -0.7594 46 1 1.3482 -4.2248 -1.1917 47 1 3.0969 -3.8824 -1.0990 48 1 2.5831 -2.3295 -3.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047663309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:17 Heat of formation + Delta-G solvation = 13.506216 kcal Electronic energy + Delta-G solvation = -29224.796777 eV Core-core repulsion = 25282.073290 eV Total energy + Delta-G solvation = -3942.723488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72277 -39.49428 -37.60592 -36.11783 -35.09633 -34.65822 -32.95629 -31.94692 -29.99197 -28.43189 -27.81795 -27.10683 -26.67881 -24.90947 -24.14797 -22.32972 -21.84961 -20.37651 -19.83145 -19.05124 -18.95118 -17.01229 -16.97948 -16.76976 -16.10875 -15.79647 -15.61532 -14.86324 -14.70084 -14.57839 -14.25660 -14.06960 -13.95119 -13.85743 -13.58319 -13.12793 -12.86443 -12.67515 -12.59727 -12.53467 -12.18247 -12.04374 -11.85943 -11.54234 -11.48814 -11.28812 -11.23352 -11.21435 -11.16964 -10.83696 -10.78074 -10.11880 -9.90953 -9.75060 -9.52266 -9.19060 -8.65982 -8.61771 -8.21875 -8.16585 -6.88462 -5.75440 -3.09299 1.82065 2.37961 2.62208 3.32265 3.39847 3.45340 3.47511 3.80835 4.06991 4.20539 4.28147 4.46805 4.49531 4.76421 4.76546 4.81986 4.90626 5.03115 5.06989 5.22278 5.22545 5.30117 5.30210 5.39102 5.42149 5.45317 5.52693 5.58487 5.64272 5.71164 5.71970 5.82631 5.90256 5.96676 6.06006 6.16969 6.20329 6.55185 6.71785 6.73636 6.98098 7.05302 7.14102 7.40736 7.49774 7.75580 7.82040 8.19201 8.29585 8.66953 9.16105 9.76379 10.41250 11.36413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.002462 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.572843 B =11371.866588 C =11785.334752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.600 5.600 3 C 0.588 3.412 4 O -0.541 6.541 5 C -0.218 4.218 6 C -0.136 4.136 7 C 0.006 3.994 8 N -0.444 5.444 9 C 0.028 3.972 10 C 0.102 3.898 11 C -0.134 4.134 12 C -0.125 4.125 13 C -0.050 4.050 14 C 0.137 3.863 15 H 0.114 0.886 16 C 0.132 3.868 17 N -0.599 5.599 18 C -0.229 4.229 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.151 3.849 27 C 0.065 3.935 28 H 0.054 0.946 29 O -0.559 6.559 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.253 0.747 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 24.970 -0.439 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.332 5.332 3 C 0.378 3.622 4 O -0.419 6.419 5 C -0.228 4.228 6 C -0.160 4.160 7 C -0.101 4.101 8 N -0.121 5.121 9 C -0.106 4.106 10 C -0.019 4.019 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.088 4.088 14 C 0.033 3.967 15 H 0.132 0.868 16 C 0.005 3.995 17 N -0.327 5.327 18 C -0.357 4.357 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.025 3.975 27 C 0.004 3.996 28 H 0.072 0.928 29 O -0.363 6.363 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.204 0.796 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.769 25.348 -0.025 27.947 hybrid contribution -0.396 -1.507 0.113 1.562 sum -12.166 23.841 0.089 26.766 Atomic orbital electron populations 1.22243 0.81004 1.03431 1.01129 1.47506 1.06206 1.05787 1.73713 1.17413 0.86598 0.82317 0.75850 1.90756 1.13884 1.87006 1.50229 1.20434 0.92967 0.93474 1.15937 1.21531 0.98295 0.89886 1.06325 1.20283 0.85855 0.93849 1.10157 1.43978 1.08008 1.05539 1.54578 1.22950 0.97272 0.85322 1.05016 1.22060 0.82748 0.94803 1.02334 1.21840 1.01505 0.93502 1.00302 1.21638 0.94914 1.00319 0.99361 1.20339 0.97262 0.88025 1.03194 1.22340 0.98539 0.81259 0.94609 0.86778 1.21829 0.97344 0.85493 0.94879 1.44312 1.83064 1.03479 1.01859 1.19075 1.42989 0.84296 0.89366 0.90153 1.24844 1.01847 0.97552 0.96055 1.69962 1.55612 1.22197 1.08976 0.86070 0.77349 0.82754 0.79444 1.21594 1.21720 1.20540 1.21861 1.01754 0.89344 0.84500 1.23559 0.92006 0.97236 0.86758 0.92792 1.86529 1.63270 1.61176 1.25346 0.92414 0.90548 0.90462 0.83653 0.79590 0.90012 0.89270 0.89672 0.90677 0.91347 0.90671 0.90215 0.89656 0.93417 0.95613 0.93657 0.93220 0.92574 0.78147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 7.26 59.85 0.43 1.24 16 2 N -0.60 -10.34 2.91 -172.81 -0.50 -10.84 16 3 C 0.59 11.01 7.66 -12.59 -0.10 10.91 16 4 O -0.54 -12.38 16.38 5.25 0.09 -12.29 16 5 C -0.22 -3.27 6.12 -103.32 -0.63 -3.91 16 6 C -0.14 -1.88 10.89 -37.62 -0.41 -2.29 16 7 C 0.01 0.07 6.53 -81.52 -0.53 -0.47 16 8 N -0.44 -4.24 3.11 -111.87 -0.35 -4.59 16 9 C 0.03 0.31 9.34 -16.88 -0.16 0.16 16 10 C 0.10 0.57 6.89 -3.68 -0.03 0.54 16 11 C -0.13 -0.59 5.91 -26.59 -0.16 -0.75 16 12 C -0.12 -0.62 5.97 -26.45 -0.16 -0.78 16 13 C -0.05 -0.36 6.26 -27.48 -0.17 -0.53 16 14 C 0.14 2.80 3.15 -65.79 -0.21 2.60 16 15 H 0.11 2.73 7.05 -51.93 -0.37 2.36 16 16 C 0.13 2.83 6.81 -2.35 -0.02 2.81 16 17 N -0.60 -15.53 3.41 -169.81 -0.58 -16.11 16 18 C -0.23 -6.43 10.27 -15.06 -0.15 -6.59 16 19 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -26.99 10.37 55.49 0.58 -26.41 16 22 Si 0.91 22.13 29.56 -169.99 -5.02 17.10 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.15 3.71 5.15 -3.06 -0.02 3.70 16 27 C 0.06 1.32 3.87 -24.90 -0.10 1.22 16 28 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 29 O -0.56 -11.18 13.39 -35.23 -0.47 -11.65 16 30 H 0.06 0.60 7.42 -51.93 -0.39 0.22 16 31 H 0.08 0.78 5.29 -51.93 -0.27 0.51 16 32 H 0.08 0.97 6.37 -51.93 -0.33 0.64 16 33 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.19 1.61 4.40 -52.48 -0.23 1.38 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 39 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.51 6.95 -51.93 -0.36 0.15 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 47 H 0.06 1.56 7.46 -51.93 -0.39 1.17 16 48 H 0.37 5.81 9.11 45.56 0.42 6.22 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -36.85 373.29 -9.54 -46.39 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.41 Total: 5.21 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -2.49 Total: 7.58 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.85 Total: -57.96 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.39 Total: -23.95 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.85 -9.54 -46.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047663309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.893 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds