Wall clock time and date at job start Tue Mar 31 2020 17:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 120.00120 * 2 1 4 4 O 1.21626 * 119.99771 * 185.61142 * 3 2 1 5 5 C 1.47267 * 119.99971 * 5.60821 * 3 2 1 6 6 C 1.46738 * 126.92227 * 187.23983 * 5 3 2 7 7 C 1.34065 * 106.31172 * 179.97438 * 6 5 3 8 8 N 1.37084 * 109.04178 * 0.02599 * 7 6 5 9 9 C 1.34580 * 109.94579 * 359.70221 * 8 7 6 10 10 C 1.47030 * 123.95687 * 179.91363 * 8 7 6 11 11 C 1.53146 * 108.83419 * 342.45573 * 10 8 7 12 12 C 1.53125 * 109.59578 * 51.21216 * 11 10 8 13 13 C 1.51085 * 126.73150 * 180.02562 * 7 6 5 14 14 C 1.46499 * 119.99928 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.91194 * 183.90640 * 14 2 1 16 16 C 1.54904 * 111.00376 * 307.80758 * 14 2 1 17 17 N 1.47746 * 104.84302 * 155.16764 * 16 14 2 18 18 C 1.36934 * 125.82851 * 155.82795 * 17 16 14 19 19 H 1.08003 * 119.99676 * 353.40686 * 18 17 16 20 20 C 1.38810 * 120.00588 * 173.40752 * 18 17 16 21 21 N 1.31625 * 119.99614 * 7.49856 * 20 18 17 22 22 Si 1.86800 * 120.00339 * 187.49539 * 20 18 17 23 23 H 1.48493 * 109.46927 * 94.98066 * 22 20 18 24 24 H 1.48506 * 109.46945 * 214.98419 * 22 20 18 25 25 H 1.48497 * 109.46991 * 334.98044 * 22 20 18 26 26 C 1.47029 * 108.52617 * 335.75169 * 17 16 14 27 27 C 1.54321 * 107.39920 * 1.17961 * 26 17 16 28 28 H 1.09005 * 110.71839 * 263.75215 * 27 26 17 29 29 O 1.42908 * 110.71732 * 140.48452 * 27 26 17 30 30 H 1.09003 * 109.47122 * 275.74391 * 1 2 3 31 31 H 1.09003 * 109.46853 * 35.73984 * 1 2 3 32 32 H 1.08996 * 109.47138 * 155.74053 * 1 2 3 33 33 H 1.08001 * 126.84491 * 359.97438 * 6 5 3 34 34 H 1.08007 * 125.72619 * 180.34647 * 9 8 7 35 35 H 1.09003 * 109.58014 * 102.25942 * 10 8 7 36 36 H 1.09001 * 109.57365 * 222.52343 * 10 8 7 37 37 H 1.09001 * 109.44620 * 171.24919 * 11 10 8 38 38 H 1.08998 * 109.44914 * 291.16760 * 11 10 8 39 39 H 1.08998 * 109.52562 * 49.73095 * 12 11 10 40 40 H 1.08999 * 109.52716 * 169.87120 * 12 11 10 41 41 H 1.09004 * 109.71286 * 283.88972 * 13 7 6 42 42 H 1.08997 * 109.72220 * 44.53981 * 13 7 6 43 43 H 1.09004 * 110.36948 * 273.92059 * 16 14 2 44 44 H 1.08997 * 110.37204 * 36.13752 * 16 14 2 45 45 H 0.96997 * 119.99916 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.87960 * 241.68461 * 26 17 16 47 47 H 1.08999 * 109.88453 * 120.67660 * 26 17 16 48 48 H 0.96689 * 114.00448 * 61.44948 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3508 1.1697 -0.1030 5 6 1.4079 2.4396 0.1246 6 6 1.9633 3.7916 -0.0048 7 6 0.9408 4.6382 0.1829 8 7 -0.2004 3.9161 0.4183 9 6 0.0733 2.5990 0.3782 10 6 -1.5172 4.5199 0.6695 11 6 -1.3220 5.9890 1.0555 12 6 -0.4338 6.6793 0.0166 13 6 0.9993 6.1475 0.1481 14 6 2.1975 -1.2687 0.0006 15 1 3.2718 -1.0977 0.0699 16 6 1.7073 -2.1923 1.1435 17 7 2.0288 -3.5607 0.6886 18 6 2.2210 -4.6496 1.4964 19 1 2.2464 -4.5282 2.5693 20 6 2.3832 -5.9093 0.9365 21 7 2.5003 -6.0395 -0.3681 22 14 2.4355 -7.4198 2.0343 23 1 1.0795 -8.0194 2.1161 24 1 3.3824 -8.4125 1.4657 25 1 2.8864 -7.0281 3.3939 26 6 2.1063 -3.5588 -0.7797 27 6 1.8484 -2.1129 -1.2535 28 1 0.8026 -1.9785 -1.5300 29 8 2.7084 -1.7774 -2.3444 30 1 -0.3633 0.1029 1.0225 31 1 -0.3633 0.8342 -0.6003 32 1 -0.3633 -0.9369 -0.4222 33 1 2.9909 4.0528 -0.2102 34 1 -0.6406 1.8018 0.5239 35 1 -2.1259 4.4571 -0.2326 36 1 -2.0131 3.9894 1.4824 37 1 -2.2912 6.4864 1.0924 38 1 -0.8473 6.0468 2.0349 39 1 -0.8113 6.4675 -0.9838 40 1 -0.4410 7.7556 0.1886 41 1 1.4470 6.5195 1.0697 42 1 1.5919 6.4730 -0.7069 43 1 2.2390 -1.9667 2.0680 44 1 0.6328 -2.0801 1.2876 45 1 2.6133 -6.9198 -0.7594 46 1 1.3482 -4.2248 -1.1917 47 1 3.0969 -3.8824 -1.0990 48 1 2.5831 -2.3295 -3.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047663309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:17 Heat of formation + Delta-G solvation = -13.374081 kcal Electronic energy + Delta-G solvation = -29225.962394 eV Core-core repulsion = 25282.073290 eV Total energy + Delta-G solvation = -3943.889105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57714 -40.93584 -39.23450 -36.80391 -36.70195 -36.24561 -33.87850 -33.62463 -31.24095 -29.91484 -29.04404 -28.43013 -27.83073 -26.43152 -25.22541 -23.48024 -22.45240 -22.29976 -21.25860 -20.26982 -19.74317 -19.01373 -18.31448 -17.83736 -17.42866 -17.05198 -16.59839 -16.46841 -16.06871 -15.70217 -15.45309 -15.05909 -14.85821 -14.71796 -14.53059 -14.50757 -14.37181 -14.18546 -13.98988 -13.71100 -13.52064 -13.38795 -13.16457 -12.98211 -12.75027 -12.68433 -12.48128 -12.33520 -12.06005 -11.90414 -11.88899 -11.74329 -11.66645 -11.56528 -11.06207 -10.85229 -10.74666 -9.74831 -9.43779 -9.10239 -8.95973 -7.89456 -5.26542 0.77325 1.43613 1.46603 1.48583 1.57744 1.81461 2.07849 2.47278 2.55270 3.13429 3.32158 3.57730 3.63942 3.71059 3.83725 3.85576 3.88246 4.01804 4.05150 4.08530 4.18608 4.26229 4.40468 4.45448 4.47433 4.52985 4.56588 4.57838 4.61690 4.78953 4.82795 4.87640 4.93397 4.97728 5.06844 5.09658 5.12315 5.21286 5.35655 5.39097 5.40327 5.54433 5.63891 5.79560 6.09995 6.11876 6.37787 6.50358 6.84140 7.02720 7.29135 7.67736 8.32380 9.21080 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.002462 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.572843 B =11371.866588 C =11785.334752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.597 5.597 3 C 0.580 3.420 4 O -0.603 6.603 5 C -0.261 4.261 6 C -0.179 4.179 7 C 0.022 3.978 8 N -0.436 5.436 9 C 0.055 3.945 10 C 0.091 3.909 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.054 4.054 14 C 0.146 3.854 15 H 0.070 0.930 16 C 0.137 3.863 17 N -0.621 5.621 18 C -0.246 4.246 19 H 0.086 0.914 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.164 3.836 27 C 0.083 3.917 28 H 0.088 0.912 29 O -0.573 6.573 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.219 0.781 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.249 0.751 46 H 0.030 0.970 47 H 0.012 0.988 48 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 27.004 0.586 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.328 5.328 3 C 0.373 3.627 4 O -0.486 6.486 5 C -0.271 4.271 6 C -0.203 4.203 7 C -0.087 4.087 8 N -0.112 5.112 9 C -0.081 4.081 10 C -0.028 4.028 11 C -0.169 4.169 12 C -0.159 4.159 13 C -0.091 4.091 14 C 0.040 3.960 15 H 0.088 0.912 16 C 0.011 3.989 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.103 0.897 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.038 3.962 27 C 0.022 3.978 28 H 0.105 0.895 29 O -0.380 6.380 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.144 0.856 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.030 0.970 48 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.935 27.427 1.008 31.736 hybrid contribution 0.856 -2.020 -0.207 2.204 sum -15.079 25.407 0.801 29.555 Atomic orbital electron populations 1.22644 0.77573 1.04833 1.03618 1.47504 1.08145 1.03955 1.73155 1.18065 0.86186 0.83711 0.74725 1.90707 1.16650 1.87889 1.53328 1.20217 0.94837 0.91927 1.20111 1.21582 0.98751 0.90674 1.09311 1.20657 0.85346 0.95291 1.07424 1.44352 1.09296 1.05004 1.52513 1.23222 0.95932 0.86791 1.02191 1.22527 0.80569 0.95526 1.04188 1.21883 1.02703 0.92818 0.99544 1.21651 0.93128 1.01463 0.99668 1.20501 0.99383 0.85541 1.03722 1.21873 0.96722 0.82880 0.94491 0.91200 1.21921 0.98822 0.83493 0.94705 1.44589 1.83191 1.04758 1.02346 1.19462 1.42658 0.85306 0.90020 0.89664 1.25721 1.01964 1.00453 0.97485 1.70169 1.56593 1.22387 1.10598 0.84998 0.77280 0.78685 0.77977 1.20757 1.22307 1.19346 1.21601 0.98594 0.91765 0.84236 1.23381 0.93558 0.94062 0.86774 0.89491 1.86503 1.63715 1.61676 1.26124 0.89502 0.87930 0.90050 0.85554 0.76518 0.88047 0.87103 0.86927 0.91269 0.91371 0.88821 0.89515 0.89406 0.94104 0.92384 0.94157 0.95161 0.96959 0.75986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 7.26 127.77 0.93 2.08 16 2 N -0.60 -20.32 2.91 -818.88 -2.38 -22.71 16 3 C 0.58 22.45 7.66 86.62 0.66 23.12 16 4 O -0.60 -29.77 16.38 -4.11 -0.07 -29.84 16 5 C -0.26 -7.82 6.12 -19.02 -0.12 -7.94 16 6 C -0.18 -5.12 10.89 23.54 0.26 -4.87 16 7 C 0.02 0.43 6.53 40.91 0.27 0.70 16 8 N -0.44 -6.90 3.11 -507.83 -1.58 -8.48 16 9 C 0.05 1.06 9.34 83.93 0.78 1.85 16 10 C 0.09 0.56 6.89 86.33 0.59 1.16 16 11 C -0.13 -0.56 5.91 30.68 0.18 -0.38 16 12 C -0.12 -0.76 5.97 30.78 0.18 -0.57 16 13 C -0.05 -0.65 6.26 30.11 0.19 -0.46 16 14 C 0.15 6.13 3.15 46.38 0.15 6.28 16 15 H 0.07 3.58 7.05 -2.39 -0.02 3.56 16 16 C 0.14 5.86 6.81 86.79 0.59 6.45 16 17 N -0.62 -32.82 3.41 -691.17 -2.35 -35.18 16 18 C -0.25 -13.99 10.27 84.03 0.86 -13.12 16 19 H 0.09 4.63 7.84 -2.91 -0.02 4.60 16 20 C -0.06 -3.61 5.48 84.86 0.46 -3.14 16 21 N -0.95 -57.30 10.37 21.65 0.22 -57.07 16 22 Si 0.98 45.92 29.56 68.60 2.03 47.94 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.16 8.34 5.15 86.73 0.45 8.79 16 27 C 0.08 3.38 3.87 31.78 0.12 3.51 16 28 H 0.09 3.02 6.47 -2.38 -0.02 3.00 16 29 O -0.57 -23.47 13.39 -148.98 -1.99 -25.46 16 30 H 0.09 1.40 7.42 -2.39 -0.02 1.38 16 31 H 0.10 1.68 5.29 -2.39 -0.01 1.67 16 32 H 0.08 1.72 6.37 -2.39 -0.02 1.71 16 33 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.22 2.68 4.40 -2.91 -0.01 2.67 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 38 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16 39 H 0.07 0.46 8.12 -2.39 -0.02 0.44 16 40 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.06 2.16 6.95 -2.39 -0.02 2.14 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.03 1.64 7.36 -2.39 -0.02 1.62 16 47 H 0.01 0.72 7.46 -2.39 -0.02 0.70 16 48 H 0.39 12.38 9.11 -74.06 -0.67 11.70 16 Total: -1.00 -86.87 373.29 0.75 -86.11 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.31 Total: 21.23 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 6.56 Total: 23.45 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -6.09 Total: -123.43 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.06 Total: -55.30 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -86.87 0.75 -86.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047663309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -86.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds