Wall clock time and date at job start Tue Mar 31 2020 17:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35676 * 117.00068 * 2 1 4 4 C 1.38918 * 119.68622 * 179.97438 * 3 2 1 5 5 C 1.38378 * 119.11469 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.75861 * 179.97438 * 5 4 3 7 7 C 1.50709 * 109.47042 * 270.02275 * 6 5 4 8 8 O 1.21276 * 119.99820 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99858 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00134 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.48724 * 325.00469 * 10 9 7 12 12 C 1.52565 * 109.49348 * 204.95407 * 10 9 7 13 13 C 1.47091 * 114.32517 * 155.02295 * 12 10 9 14 14 C 1.54860 * 110.32452 * 62.80437 * 13 12 10 15 15 N 1.44583 * 109.60037 * 288.73373 * 14 13 12 16 16 C 1.36936 * 118.64365 * 270.72257 * 15 14 13 17 17 H 1.08000 * 119.99934 * 26.49482 * 16 15 14 18 18 C 1.38809 * 120.00099 * 206.49324 * 16 15 14 19 19 N 1.31619 * 120.00085 * 15.66949 * 18 16 15 20 20 Si 1.86803 * 119.99904 * 195.67389 * 18 16 15 21 21 H 1.48507 * 109.47057 * 59.99849 * 20 18 16 22 22 H 1.48495 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46995 * 299.99864 * 20 18 16 24 24 C 1.47601 * 122.71425 * 90.74505 * 15 14 13 25 25 C 1.50882 * 109.48767 * 85.04441 * 10 9 7 26 26 C 1.38828 * 118.48533 * 359.97438 * 5 4 3 27 27 C 1.38048 * 119.28648 * 359.97438 * 26 5 4 28 28 N 1.31969 * 120.83907 * 0.02562 * 27 26 5 29 29 H 1.08996 * 109.47323 * 300.00659 * 1 2 3 30 30 H 1.09003 * 109.46819 * 60.00268 * 1 2 3 31 31 H 1.09001 * 109.47199 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.44396 * 0.03222 * 4 3 2 33 33 H 1.09001 * 109.47426 * 30.02152 * 6 5 4 34 34 H 1.08996 * 109.46880 * 150.02502 * 6 5 4 35 35 H 0.97004 * 119.99654 * 359.97438 * 9 7 6 36 36 H 1.08999 * 108.51333 * 276.27599 * 12 10 9 37 37 H 1.08999 * 108.50716 * 33.92894 * 12 10 9 38 38 H 1.09001 * 109.32973 * 183.06767 * 13 12 10 39 39 H 1.09010 * 109.32844 * 302.54233 * 13 12 10 40 40 H 1.08995 * 109.44868 * 48.77462 * 14 13 12 41 41 H 1.09003 * 109.45350 * 168.69378 * 14 13 12 42 42 H 0.96998 * 119.99833 * 180.02562 * 19 18 16 43 43 H 1.09005 * 108.94768 * 78.52790 * 24 15 14 44 44 H 1.08996 * 108.95142 * 197.24830 * 24 15 14 45 45 H 1.09003 * 109.36960 * 332.04714 * 25 10 9 46 46 H 1.09003 * 109.36322 * 91.66258 * 25 10 9 47 47 H 1.07997 * 120.35682 * 179.97438 * 26 5 4 48 48 H 1.07999 * 119.58411 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0011 6 6 5.5512 2.6269 0.0022 7 6 6.0511 2.6642 1.4235 8 8 5.2645 2.6047 2.3447 9 7 7.3721 2.7646 1.6708 10 6 7.8580 2.8014 3.0524 11 1 7.1424 3.3380 3.6754 12 6 9.2070 3.5125 3.0988 13 6 9.5265 4.1214 4.3991 14 6 9.6307 3.0302 5.4930 15 7 8.3138 2.5104 5.7865 16 6 7.5685 3.1219 6.7590 17 1 7.7300 4.1651 6.9871 18 6 6.6054 2.4010 7.4515 19 7 6.6093 1.0856 7.4066 20 14 5.3039 3.2977 8.4471 21 1 4.5153 4.1803 7.5500 22 1 4.4002 2.3077 9.0861 23 1 5.9610 4.1181 9.4960 24 6 7.7399 1.3476 5.0815 25 6 8.0169 1.3923 3.5678 26 6 3.2505 3.6491 0.0005 27 6 1.8771 3.5097 -0.0011 28 7 1.3186 2.3140 -0.0016 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0229 0.3695 0.0004 33 1 5.9812 1.7671 -0.5116 34 1 5.8467 3.5420 -0.5109 35 1 8.0012 2.8125 0.9340 36 1 9.9869 2.7917 2.8533 37 1 9.2111 4.2966 2.3417 38 1 10.4766 4.6508 4.3259 39 1 8.7422 4.8289 4.6687 40 1 10.2696 2.2213 5.1389 41 1 10.0601 3.4622 6.3970 42 1 5.9361 0.5818 7.8902 43 1 8.1713 0.4354 5.4939 44 1 6.6619 1.3330 5.2421 45 1 7.3145 0.7374 3.0522 46 1 9.0341 1.0502 3.3769 47 1 3.6994 4.6314 0.0013 48 1 1.2518 4.3902 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052713136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:04 Heat of formation + Delta-G solvation = -15.455686 kcal Electronic energy + Delta-G solvation = -29158.410392 eV Core-core repulsion = 25214.431022 eV Total energy + Delta-G solvation = -3943.979370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78566 -39.67673 -38.11331 -37.48538 -34.66859 -33.81149 -32.83996 -31.03566 -30.80360 -30.47542 -28.62753 -27.17747 -25.88260 -24.01020 -23.52051 -23.24120 -22.15059 -20.31926 -20.00206 -19.18848 -17.96939 -17.21765 -16.87170 -16.58101 -16.05669 -16.02293 -15.83110 -15.20415 -14.87173 -14.47503 -14.23926 -14.14890 -13.89275 -13.56716 -13.31904 -13.16931 -12.91199 -12.77693 -12.51350 -12.36841 -12.10910 -11.88753 -11.72735 -11.45929 -11.29439 -11.04347 -10.84473 -10.71017 -10.38495 -10.19412 -10.05022 -9.96800 -9.86500 -9.75080 -9.66339 -9.54787 -9.36752 -8.70444 -8.56109 -8.28155 -6.58704 -5.68837 -3.12706 1.09186 1.18253 2.86582 2.98985 3.37649 3.45973 3.52259 3.54699 3.79345 4.22306 4.42656 4.59460 4.78366 4.98031 5.00119 5.05001 5.14810 5.18816 5.19195 5.27039 5.30425 5.33033 5.50585 5.52599 5.59933 5.65872 5.76306 5.80403 6.02849 6.13544 6.19883 6.22821 6.32219 6.32394 6.46720 6.51456 6.62348 6.71539 6.80247 6.88010 7.03344 7.09611 7.15818 7.51388 7.76701 7.77980 7.80506 7.92238 8.50745 8.56889 9.33196 10.00313 10.44436 11.38700 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.003400 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.739734 B = 8233.394207 C = 9675.626859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.174 4.174 5 C 0.015 3.985 6 C -0.105 4.105 7 C 0.508 3.492 8 O -0.516 6.516 9 N -0.728 5.728 10 C 0.154 3.846 11 H 0.102 0.898 12 C -0.105 4.105 13 C -0.146 4.146 14 C 0.156 3.844 15 N -0.591 5.591 16 C -0.261 4.261 17 H 0.064 0.936 18 C 0.009 3.991 19 N -0.903 5.903 20 Si 0.898 3.102 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.183 3.817 25 C -0.146 4.146 26 C -0.195 4.195 27 C 0.138 3.862 28 N -0.543 5.543 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.391 0.609 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.135 0.865 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 2.566 -20.656 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.142 3.858 4 C -0.195 4.195 5 C 0.007 3.993 6 C -0.145 4.145 7 C 0.292 3.708 8 O -0.391 6.391 9 N -0.380 5.380 10 C 0.051 3.949 11 H 0.120 0.880 12 C -0.143 4.143 13 C -0.187 4.187 14 C 0.028 3.972 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.728 3.272 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.058 3.942 25 C -0.186 4.186 26 C -0.216 4.216 27 C -0.017 4.017 28 N -0.267 5.267 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.224 0.776 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.153 0.847 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.917 2.008 -19.874 20.355 hybrid contribution 0.244 0.611 0.158 0.676 sum -3.673 2.619 -19.716 20.225 Atomic orbital electron populations 1.22832 0.77368 1.02805 1.02374 1.86235 1.22818 1.24628 1.87922 1.19725 0.89213 0.84664 0.92242 1.20848 0.92075 0.98935 1.07635 1.19439 0.94573 0.92350 0.92897 1.20732 0.91939 1.05541 0.96327 1.20238 0.82806 0.77315 0.90437 1.90837 1.54894 1.47501 1.45855 1.46309 1.06760 1.75277 1.09624 1.20530 0.96437 0.97553 0.80387 0.87978 1.20559 0.95972 0.99086 0.98729 1.21454 1.00206 1.00529 0.96495 1.20690 0.87815 0.93567 0.95107 1.43658 1.12466 1.34642 1.40436 1.19116 1.15124 0.92955 1.11869 0.91848 1.24993 1.00818 0.95130 0.98076 1.70039 1.35337 1.04467 1.44843 0.86433 0.82024 0.78859 0.79842 1.20995 1.21676 1.20965 1.20933 0.99956 0.88777 0.84577 1.22439 0.99877 0.95354 1.00971 1.21810 0.94798 0.99230 1.05715 1.22299 0.92672 0.93575 0.93128 1.67271 1.41012 0.98873 1.19554 0.92266 0.92465 0.88741 0.84281 0.87550 0.87488 0.77580 0.92823 0.93459 0.93051 0.91970 0.95017 0.93601 0.93674 0.95712 0.90425 0.92688 0.93647 0.84661 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.19 10.48 -18.73 -0.20 -4.38 16 3 C 0.32 4.59 7.49 -17.12 -0.13 4.46 16 4 C -0.17 -2.35 9.75 -39.28 -0.38 -2.73 16 5 C 0.02 0.19 4.41 -104.35 -0.46 -0.27 16 6 C -0.11 -1.05 5.88 -29.03 -0.17 -1.22 16 7 C 0.51 7.58 7.64 -10.98 -0.08 7.49 16 8 O -0.52 -10.78 15.70 5.56 0.09 -10.70 16 9 N -0.73 -9.83 4.93 -55.06 -0.27 -10.10 16 10 C 0.15 2.69 2.06 -69.22 -0.14 2.55 16 11 H 0.10 2.30 6.92 -51.93 -0.36 1.94 16 12 C -0.11 -1.58 4.69 -29.79 -0.14 -1.72 16 13 C -0.15 -2.48 5.74 -28.59 -0.16 -2.64 16 14 C 0.16 3.21 5.65 -4.08 -0.02 3.18 16 15 N -0.59 -14.73 2.27 -172.09 -0.39 -15.12 16 16 C -0.26 -7.27 9.44 -15.06 -0.14 -7.42 16 17 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 18 C 0.01 0.25 4.87 -17.43 -0.08 0.16 16 19 N -0.90 -27.08 11.01 55.49 0.61 -26.47 16 20 Si 0.90 22.83 29.58 -169.99 -5.03 17.80 16 21 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.18 4.52 4.67 -2.94 -0.01 4.51 16 25 C -0.15 -2.83 5.38 -27.30 -0.15 -2.98 16 26 C -0.20 -2.27 9.81 -39.43 -0.39 -2.65 16 27 C 0.14 1.64 11.18 -17.56 -0.20 1.44 16 28 N -0.54 -7.51 9.22 -13.33 -0.12 -7.64 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.39 3.70 8.60 -40.82 -0.35 3.35 16 36 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 37 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 41 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.02 0.66 8.03 -51.93 -0.42 0.24 16 44 H 0.08 2.23 6.33 -51.93 -0.33 1.90 16 45 H 0.05 1.08 7.84 -51.93 -0.41 0.67 16 46 H 0.04 0.80 7.32 -51.93 -0.38 0.42 16 47 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 48 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -35.29 387.25 -8.74 -44.03 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.65 Total: 3.10 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.62 Total: 3.64 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.17 Total: -59.33 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.11 Total: -15.08 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.29 -8.74 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052713136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.576 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds