Wall clock time and date at job start Tue Mar 31 2020 17:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99684 * 2 1 4 4 H 1.08996 * 110.63915 * 26.86594 * 3 2 1 5 5 C 1.54319 * 110.87056 * 263.60869 * 3 2 1 6 6 N 1.47028 * 107.26947 * 219.37186 * 5 3 2 7 7 C 1.36936 * 125.64452 * 178.89615 * 6 5 3 8 8 H 1.08002 * 119.99676 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00535 * 0.03224 * 7 6 5 10 10 N 1.31622 * 119.99558 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46776 * 89.99412 * 11 9 7 13 13 H 1.48497 * 109.47491 * 209.99612 * 11 9 7 14 14 H 1.48501 * 109.46969 * 330.00288 * 11 9 7 15 15 C 1.47419 * 108.70371 * 358.94679 * 6 5 3 16 16 C 1.54912 * 104.83391 * 24.12534 * 15 6 5 17 17 H 1.08995 * 111.03512 * 81.08074 * 16 15 6 18 18 N 1.46498 * 111.00363 * 204.91815 * 16 15 6 19 19 C 1.34777 * 119.99828 * 266.91713 * 18 16 15 20 20 O 1.21693 * 120.00014 * 0.28042 * 19 18 16 21 21 C 1.46682 * 120.00182 * 180.27909 * 19 18 16 22 22 C 1.38047 * 126.20715 * 180.02562 * 21 19 18 23 23 C 1.39241 * 106.97762 * 179.97438 * 22 21 19 24 24 C 1.35964 * 108.04075 * 0.04487 * 23 22 21 25 25 N 1.35116 * 108.76101 * 359.67374 * 24 23 22 26 26 H 0.97000 * 125.68144 * 180.36236 * 25 24 23 27 27 C 1.51017 * 123.85417 * 179.89130 * 24 23 22 28 28 C 1.53328 * 108.40730 * 343.31062 * 27 24 23 29 29 C 1.53095 * 109.53029 * 50.17991 * 28 27 24 30 30 C 1.50844 * 127.70476 * 180.13237 * 23 22 21 31 31 H 1.08992 * 109.47285 * 59.99890 * 1 2 3 32 32 H 1.08997 * 109.46790 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46909 * 299.99213 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.79519 * 5 3 2 35 35 H 1.09006 * 109.87996 * 99.80927 * 5 3 2 36 36 H 0.97001 * 119.99905 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36625 * 265.29189 * 15 6 5 38 38 H 1.08996 * 110.36984 * 142.96546 * 15 6 5 39 39 H 0.97001 * 120.00384 * 87.20160 * 18 16 15 40 40 H 1.08006 * 126.50964 * 359.97438 * 22 21 19 41 41 H 1.08994 * 109.68327 * 103.03910 * 27 24 23 42 42 H 1.08998 * 109.67755 * 223.54815 * 27 24 23 43 43 H 1.09000 * 109.46126 * 170.20540 * 28 27 24 44 44 H 1.09000 * 109.45832 * 290.17157 * 28 27 24 45 45 H 1.09001 * 109.47349 * 49.59417 * 29 28 27 46 46 H 1.09000 * 109.47821 * 169.59939 * 29 28 27 47 47 H 1.09002 * 109.68055 * 283.16672 * 30 23 22 48 48 H 1.08999 * 109.68203 * 43.71894 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7425 -1.4330 6 7 3.6668 2.4502 -1.3549 7 6 4.3523 2.9792 -2.4157 8 1 5.2941 3.4822 -2.2533 9 6 3.8367 2.8690 -3.6998 10 7 2.6892 2.2556 -3.8978 11 14 4.7715 3.5912 -5.1469 12 1 5.6970 2.5690 -5.6982 13 1 3.8101 4.0075 -6.1993 14 1 5.5508 4.7712 -4.6935 15 6 4.0970 2.4948 0.0544 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3653 0.5370 18 7 3.2164 1.5210 2.1637 19 6 4.1438 1.0639 3.0283 20 8 5.1209 0.4685 2.6139 21 6 3.9754 1.2840 4.4687 22 6 4.8409 0.8740 5.4630 23 6 4.2953 1.2909 6.6743 24 6 3.1278 1.9358 6.4105 25 7 2.9275 1.9429 5.0743 26 1 2.1713 2.3435 4.6177 27 6 2.2382 2.5340 7.4742 28 6 2.6365 1.9384 8.8297 29 6 4.1516 2.0564 9.0152 30 6 4.8603 1.0899 8.0584 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 2.4775 0.8666 -2.0743 35 1 1.6123 2.4076 -1.8278 36 1 2.3290 2.1782 -4.7951 37 1 3.7839 3.4307 0.5172 38 1 5.1785 2.3790 0.1248 39 1 2.4376 1.9955 2.4941 40 1 5.7655 0.3326 5.3270 41 1 2.3687 3.6159 7.4961 42 1 1.1968 2.2942 7.2592 43 1 2.1295 2.4807 9.6278 44 1 2.3473 0.8880 8.8639 45 1 4.4658 3.0775 8.7989 46 1 4.4125 1.8062 10.0436 47 1 4.6877 0.0627 8.3797 48 1 5.9302 1.2982 8.0520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082304590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:29 Heat of formation + Delta-G solvation = -18.723939 kcal Electronic energy + Delta-G solvation = -28762.357389 eV Core-core repulsion = 24818.236297 eV Total energy + Delta-G solvation = -3944.121092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72986 -39.46427 -38.05401 -36.52965 -35.92712 -34.12447 -32.39337 -31.81194 -29.65623 -29.06699 -28.57256 -27.12808 -26.15553 -24.72090 -23.78244 -22.50296 -21.63427 -20.59050 -20.38534 -19.89834 -18.72148 -18.45805 -17.03821 -16.51197 -15.98573 -15.60909 -15.34649 -14.91492 -14.76389 -14.50784 -14.26473 -14.16256 -13.93914 -13.90856 -13.61645 -13.31800 -13.24421 -12.90397 -12.69791 -12.52038 -12.29241 -12.05615 -11.91875 -11.60632 -11.27324 -11.18225 -11.03805 -11.03074 -10.81664 -10.80379 -10.77263 -10.19318 -10.05273 -9.92074 -9.80966 -9.20300 -8.92254 -8.80360 -8.61262 -8.04728 -6.91073 -5.74907 -3.10092 1.43110 2.54215 2.86367 3.22207 3.40329 3.45165 3.46814 3.49678 4.09431 4.35985 4.49328 4.51535 4.55241 4.81373 4.86742 5.03825 5.11225 5.19132 5.24979 5.26892 5.32666 5.36423 5.46162 5.52306 5.54866 5.60747 5.62918 5.67474 5.69883 5.80190 5.84201 5.87467 5.98970 6.01939 6.06479 6.09329 6.12859 6.46488 6.60092 6.68373 6.78646 6.86741 7.20614 7.23972 7.45311 7.63097 7.68881 7.83594 8.18122 8.33217 9.15817 9.75820 10.38661 11.36578 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019594 B = 0.002479 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.671987 B =11292.635029 C =12006.896372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.061 0.939 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.110 0.890 18 N -0.717 5.717 19 C 0.588 3.412 20 O -0.525 6.525 21 C -0.049 4.049 22 C -0.099 4.099 23 C -0.176 4.176 24 C 0.046 3.954 25 N -0.532 5.532 26 H 0.413 0.587 27 C -0.053 4.053 28 C -0.112 4.112 29 C -0.120 4.120 30 C -0.046 4.046 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.022 0.978 38 H 0.052 0.948 39 H 0.388 0.612 40 H 0.147 0.853 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 -0.164 25.528 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.004 4.004 4 H 0.079 0.921 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.746 3.254 12 H -0.214 1.214 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.028 3.972 17 H 0.128 0.872 18 N -0.366 5.366 19 C 0.375 3.625 20 O -0.401 6.401 21 C -0.161 4.161 22 C -0.126 4.126 23 C -0.182 4.182 24 C -0.072 4.072 25 N -0.127 5.127 26 H 0.250 0.750 27 C -0.091 4.091 28 C -0.150 4.150 29 C -0.157 4.157 30 C -0.084 4.084 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.165 0.835 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.782 -0.699 24.828 25.294 hybrid contribution -0.682 1.039 -1.035 1.617 sum -5.464 0.340 23.793 24.415 Atomic orbital electron populations 1.22705 0.81778 1.02100 0.99643 1.87925 1.19034 1.27501 1.95026 1.23858 0.92881 0.84037 0.99595 0.92146 1.21549 0.88281 0.97260 0.88910 1.44255 1.21454 1.66356 1.00698 1.19081 1.02397 1.29449 0.84715 0.90101 1.24827 0.97428 1.00691 0.97425 1.69938 1.19241 1.47242 1.20610 0.86066 0.78618 0.78614 0.82148 1.21438 1.21672 1.20632 1.21821 0.97920 0.93674 0.86245 1.22448 0.96510 1.01323 0.76941 0.87217 1.45829 1.24707 1.58654 1.07455 1.17028 0.83028 0.78908 0.83505 1.90860 1.29637 1.41579 1.77978 1.20514 0.93426 1.09464 0.92720 1.21000 0.99580 1.01918 0.90080 1.19250 0.96697 1.06966 0.95289 1.20419 0.98717 1.04831 0.83258 1.41714 1.20324 1.44362 1.06315 0.74960 1.20301 0.97191 0.99839 0.91754 1.21510 0.96568 1.01561 0.95386 1.21597 0.94840 1.00131 0.99163 1.20050 0.99238 0.99228 0.89887 0.93587 0.90186 0.95023 0.91876 0.93333 0.93643 0.96033 0.93005 0.77900 0.83515 0.90282 0.90757 0.91221 0.91370 0.91703 0.91586 0.91290 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.98 10.44 -35.23 -0.37 -7.35 16 3 C 0.06 1.05 3.09 -24.90 -0.08 0.97 16 4 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 5 C 0.17 4.02 5.15 -3.06 -0.02 4.01 16 6 N -0.60 -15.52 3.39 -170.07 -0.58 -16.10 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -27.07 10.31 55.49 0.57 -26.49 16 11 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 16 C 0.13 2.53 3.15 -65.78 -0.21 2.33 16 17 H 0.11 2.40 7.53 -51.93 -0.39 2.01 16 18 N -0.72 -10.85 5.19 -53.03 -0.28 -11.12 16 19 C 0.59 9.68 7.79 -12.85 -0.10 9.58 16 20 O -0.52 -10.75 16.52 5.20 0.09 -10.66 16 21 C -0.05 -0.65 7.06 -81.84 -0.58 -1.23 16 22 C -0.10 -1.30 10.62 -39.28 -0.42 -1.72 16 23 C -0.18 -1.88 5.91 -105.00 -0.62 -2.50 16 24 C 0.05 0.43 7.02 -81.81 -0.57 -0.14 16 25 N -0.53 -5.30 5.98 -5.50 -0.03 -5.33 16 26 H 0.41 2.98 8.19 -40.82 -0.33 2.65 16 27 C -0.05 -0.33 6.30 -27.56 -0.17 -0.51 16 28 C -0.11 -0.63 5.89 -26.51 -0.16 -0.79 16 29 C -0.12 -0.74 5.90 -26.50 -0.16 -0.90 16 30 C -0.05 -0.37 6.28 -27.63 -0.17 -0.55 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.06 1.75 7.30 -51.93 -0.38 1.37 16 35 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.39 4.54 7.70 -40.82 -0.31 4.22 16 40 H 0.15 1.91 8.06 -52.48 -0.42 1.48 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 45 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -34.27 386.27 -9.89 -44.15 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.67 Total: 3.79 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.42 Total: 6.05 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.31 Total: -59.04 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.28 Total: -18.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.27 -9.89 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082304590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.430 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds